EY679474 | Citrus Genome Database

Overview


Name	EY679474
Unique Name	EY679474
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	941

Libraries


Library Name	Type
Sweet orange leaf, infected with CiLV	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of EY679474 vs. ExPASy Swiss-Prot
Match: H4_SOLLC (Histone H4 OS=Solanum lycopersicum PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 3.666e-25
Identity = 47/53 (88.68%), Postives = 48/53 (90.57%), Query Frame = 1

Query:  145 VLRDNIQGITKPAIRRLARIGGVKRISGLIFEETRGALKIFLENVIRDPVILT 303
            VLRDNIQGITKPAIRRLAR GGVKRISGLI+EETRG LKIFLENVIRD V  T
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYT 74

HSP 2 Score: 45.4394 bits (106), Expect = 3.666e-25
Identity = 22/30 (73.33%), Postives = 23/30 (76.67%), Query Frame = 3

Query:  303 TEHARRITVTAMDVHYALRR*ARNTYGIGG 392
            TEHARR TVTAMDV YAL+R  R  YG GG
Sbjct:   74 TEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

BLAST of EY679474 vs. ExPASy Swiss-Prot
Match: H4_SOLCH (Histone H4 OS=Solanum chacoense PE=3 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 3.666e-25
Identity = 47/53 (88.68%), Postives = 48/53 (90.57%), Query Frame = 1

Query:  145 VLRDNIQGITKPAIRRLARIGGVKRISGLIFEETRGALKIFLENVIRDPVILT 303
            VLRDNIQGITKPAIRRLAR GGVKRISGLI+EETRG LKIFLENVIRD V  T
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYT 74

HSP 2 Score: 45.4394 bits (106), Expect = 3.666e-25
Identity = 22/30 (73.33%), Postives = 23/30 (76.67%), Query Frame = 3

Query:  303 TEHARRITVTAMDVHYALRR*ARNTYGIGG 392
            TEHARR TVTAMDV YAL+R  R  YG GG
Sbjct:   74 TEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

BLAST of EY679474 vs. ExPASy Swiss-Prot
Match: H4_SILLA (Histone H4 OS=Silene latifolia GN=SlH4 PE=3 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 3.666e-25
Identity = 47/53 (88.68%), Postives = 48/53 (90.57%), Query Frame = 1

Query:  145 VLRDNIQGITKPAIRRLARIGGVKRISGLIFEETRGALKIFLENVIRDPVILT 303
            VLRDNIQGITKPAIRRLAR GGVKRISGLI+EETRG LKIFLENVIRD V  T
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYT 74

HSP 2 Score: 45.4394 bits (106), Expect = 3.666e-25
Identity = 22/30 (73.33%), Postives = 23/30 (76.67%), Query Frame = 3

Query:  303 TEHARRITVTAMDVHYALRR*ARNTYGIGG 392
            TEHARR TVTAMDV YAL+R  R  YG GG
Sbjct:   74 TEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

BLAST of EY679474 vs. ExPASy Swiss-Prot
Match: H4_PEA (Histone H4 OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 3.666e-25
Identity = 47/53 (88.68%), Postives = 48/53 (90.57%), Query Frame = 1

Query:  145 VLRDNIQGITKPAIRRLARIGGVKRISGLIFEETRGALKIFLENVIRDPVILT 303
            VLRDNIQGITKPAIRRLAR GGVKRISGLI+EETRG LKIFLENVIRD V  T
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYT 74

HSP 2 Score: 45.4394 bits (106), Expect = 3.666e-25
Identity = 22/30 (73.33%), Postives = 23/30 (76.67%), Query Frame = 3

Query:  303 TEHARRITVTAMDVHYALRR*ARNTYGIGG 392
            TEHARR TVTAMDV YAL+R  R  YG GG
Sbjct:   74 TEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

BLAST of EY679474 vs. ExPASy Swiss-Prot
Match: H4_MAIZE (Histone H4 OS=Zea mays GN=H4C7 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 3.666e-25
Identity = 47/53 (88.68%), Postives = 48/53 (90.57%), Query Frame = 1

Query:  145 VLRDNIQGITKPAIRRLARIGGVKRISGLIFEETRGALKIFLENVIRDPVILT 303
            VLRDNIQGITKPAIRRLAR GGVKRISGLI+EETRG LKIFLENVIRD V  T
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYT 74

HSP 2 Score: 45.4394 bits (106), Expect = 3.666e-25
Identity = 22/30 (73.33%), Postives = 23/30 (76.67%), Query Frame = 3

Query:  303 TEHARRITVTAMDVHYALRR*ARNTYGIGG 392
            TEHARR TVTAMDV YAL+R  R  YG GG
Sbjct:   74 TEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

BLAST of EY679474 vs. ExPASy Swiss-Prot
Match: H4_LOLTE (Histone H4 OS=Lolium temulentum PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 3.666e-25
Identity = 47/53 (88.68%), Postives = 48/53 (90.57%), Query Frame = 1

Query:  145 VLRDNIQGITKPAIRRLARIGGVKRISGLIFEETRGALKIFLENVIRDPVILT 303
            VLRDNIQGITKPAIRRLAR GGVKRISGLI+EETRG LKIFLENVIRD V  T
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYT 74

HSP 2 Score: 45.4394 bits (106), Expect = 3.666e-25
Identity = 22/30 (73.33%), Postives = 23/30 (76.67%), Query Frame = 3

Query:  303 TEHARRITVTAMDVHYALRR*ARNTYGIGG 392
            TEHARR TVTAMDV YAL+R  R  YG GG
Sbjct:   74 TEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

BLAST of EY679474 vs. ExPASy Swiss-Prot
Match: H4_FLATR (Histone H4 OS=Flaveria trinervia GN=hh4 PE=3 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 3.666e-25
Identity = 47/53 (88.68%), Postives = 48/53 (90.57%), Query Frame = 1

Query:  145 VLRDNIQGITKPAIRRLARIGGVKRISGLIFEETRGALKIFLENVIRDPVILT 303
            VLRDNIQGITKPAIRRLAR GGVKRISGLI+EETRG LKIFLENVIRD V  T
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYT 74

HSP 2 Score: 45.4394 bits (106), Expect = 3.666e-25
Identity = 22/30 (73.33%), Postives = 23/30 (76.67%), Query Frame = 3

Query:  303 TEHARRITVTAMDVHYALRR*ARNTYGIGG 392
            TEHARR TVTAMDV YAL+R  R  YG GG
Sbjct:   74 TEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

BLAST of EY679474 vs. ExPASy Swiss-Prot
Match: H4_EUCGL (Histone H4 OS=Eucalyptus globulus PE=3 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 3.666e-25
Identity = 47/53 (88.68%), Postives = 48/53 (90.57%), Query Frame = 1

Query:  145 VLRDNIQGITKPAIRRLARIGGVKRISGLIFEETRGALKIFLENVIRDPVILT 303
            VLRDNIQGITKPAIRRLAR GGVKRISGLI+EETRG LKIFLENVIRD V  T
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYT 74

HSP 2 Score: 45.4394 bits (106), Expect = 3.666e-25
Identity = 22/30 (73.33%), Postives = 23/30 (76.67%), Query Frame = 3

Query:  303 TEHARRITVTAMDVHYALRR*ARNTYGIGG 392
            TEHARR TVTAMDV YAL+R  R  YG GG
Sbjct:   74 TEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

BLAST of EY679474 vs. ExPASy Swiss-Prot
Match: H4_CHEMJ (Histone H4 OS=Chelidonium majus PE=3 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 3.666e-25
Identity = 47/53 (88.68%), Postives = 48/53 (90.57%), Query Frame = 1

Query:  145 VLRDNIQGITKPAIRRLARIGGVKRISGLIFEETRGALKIFLENVIRDPVILT 303
            VLRDNIQGITKPAIRRLAR GGVKRISGLI+EETRG LKIFLENVIRD V  T
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYT 74

HSP 2 Score: 45.4394 bits (106), Expect = 3.666e-25
Identity = 22/30 (73.33%), Postives = 23/30 (76.67%), Query Frame = 3

Query:  303 TEHARRITVTAMDVHYALRR*ARNTYGIGG 392
            TEHARR TVTAMDV YAL+R  R  YG GG
Sbjct:   74 TEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

BLAST of EY679474 vs. ExPASy Swiss-Prot
Match: H4_CAPAN (Histone H4 OS=Capsicum annuum PE=3 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 3.666e-25
Identity = 47/53 (88.68%), Postives = 48/53 (90.57%), Query Frame = 1

Query:  145 VLRDNIQGITKPAIRRLARIGGVKRISGLIFEETRGALKIFLENVIRDPVILT 303
            VLRDNIQGITKPAIRRLAR GGVKRISGLI+EETRG LKIFLENVIRD V  T
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYT 74

HSP 2 Score: 45.4394 bits (106), Expect = 3.666e-25
Identity = 22/30 (73.33%), Postives = 23/30 (76.67%), Query Frame = 3

Query:  303 TEHARRITVTAMDVHYALRR*ARNTYGIGG 392
            TEHARR TVTAMDV YAL+R  R  YG GG
Sbjct:   74 TEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

The following BLAST results are available for this feature:

BLAST of EY679474 vs. ExPASy Swiss-Prot

BLAST of EY679474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107


Match Name	E-value	Identity	Description
H4_SOLLC	3.666e-25	88.68	Histone H4 OS=Solanum lycopersicum PE=3 SV=2	[more]
H4_SOLCH	3.666e-25	88.68	Histone H4 OS=Solanum chacoense PE=3 SV=3	[more]
H4_SILLA	3.666e-25	88.68	Histone H4 OS=Silene latifolia GN=SlH4 PE=3 SV=3	[more]
H4_PEA	3.666e-25	88.68	Histone H4 OS=Pisum sativum PE=1 SV=2	[more]
H4_MAIZE	3.666e-25	88.68	Histone H4 OS=Zea mays GN=H4C7 PE=1 SV=2	[more]
H4_LOLTE	3.666e-25	88.68	Histone H4 OS=Lolium temulentum PE=3 SV=2	[more]
H4_FLATR	3.666e-25	88.68	Histone H4 OS=Flaveria trinervia GN=hh4 PE=3 SV=3	[more]
H4_EUCGL	3.666e-25	88.68	Histone H4 OS=Eucalyptus globulus PE=3 SV=3	[more]
H4_CHEMJ	3.666e-25	88.68	Histone H4 OS=Chelidonium majus PE=3 SV=3	[more]
H4_CAPAN	3.666e-25	88.68	Histone H4 OS=Capsicum annuum PE=3 SV=3	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C1-401-057-F01-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY679474 ID=EY679474; Name=EY679474; organism=Citrus sinensis; type=EST; length=941bp
ACTAATCAAGGCACATTCAAATTTCTCTATCCAAATTCTCTTTCGAGGAA
CAGCGGAAAGTCTTTTAAGTTCCTCGCTAAAATGTCTGGGCGCGGTAAGG
GAGGCAAGGGATTGGGAAAGGGAGGCGCCAAGCGTCACCGTAAGGTGCTT
CGCGATAACATTCAGGGTATCACAAAGCCGGCAATCCGGCGTTTGGCTCG
TATAGGTGGAGTCAAGCGTATCAGCGGCTTGATCTTCGAGGAGACACGTG
GCGCCCTGAAGATATTCTTGGAGAACGTCATCCGTGACCCCGTGATCCTA
ACACTGAACACGCCAGGAGAATTACCGTGACCGCGATGGACGTACATTAC
GCTCTCAGGAGGTAGGCTAGGAATACTTATGGAATCGGGGGTTAATTGCC
ATAAGGATACTGAGAATAATAGGGAATAAAACATGAATCTTAGATTTTAT
TCTGGTAGATGGGGTTCTTACAAGATTGAACATATGGTGTTAATTAGCAA
ATACTAACATAGATAAATCATATCAATAAAATTGAAGACAATAAAGAAAT
AGTTTCTTCTCCATCAAACCAATCCAATAATATACTGAGTATCCATTAAT
AGCTAAACAATATATCATGAAGTCTGTAGTTAAAGACTATATTATACACA
AAAAAATTAATCATTTTAATTACTGGCTAAGTCTTTTATATGCATATGGA
CCGGAACATACTAGTGTTTTACATAACAATTCCTCGTTCATATAAATCCT
CTAATTTACTCTCGCATGATAAAGTATCAGAACTAGACACTACGTAATCT
CTTACTACAATTTTGCCTATGTATTATCTGAAAATGTATTATTAAACCTC
ATATACTATTATATATATCATCTCAATCACTCGTTTCACTCAGCTTTTGT
TAAATAAGCTACTATAACCTGAGCGCTCCTCGGTTACAGAA