EY679360

Overview
NameEY679360
Unique NameEY679360
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679360 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 295.434 bits (755), Expect = 2.840e-79
Identity = 161/244 (65.98%), Postives = 178/244 (72.95%), Query Frame = 2
Query:   65 ETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQEAALAWFQTGVIPPAGTYNYWADPYTLFVLEMGTHGDLPSTGRFQEWANPGFNGEGNTFPSEFEKNLGGSGQSGLTWRTL*FTLRGLGKKKSQWKE--FQPLGNGKMEKWNRLGFWGYVWYKVLVTGIG 790
            E ARQI+G+R +QS T   RK SFVVRAASTPPVKQGA+R LWFASKQSLSYLDG LPGD+GFDPLGLSDPEGTGGFIEPKWLAYGEVINGR+AMLGA GAIAPEILGKAGLIPQE ALAWFQTGVIPPAGTYNYWAD YTLFVLEM   G      RFQ+WA PG    G  +    EK LGGSG        L F   G GK +   KE   + + NG++     LG+    + + LVTG+G
Sbjct:   17 EAARQIIGSRISQSVT---RKASFVVRAASTPPVKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMG-FAEHRRFQDWAKPG--SMGKQYFLGLEKGLGGSGDPAYPGGPL-FNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY----FIQALVTGVG 249          
BLAST of EY679360 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 7.240e-75
Identity = 156/245 (63.67%), Postives = 171/245 (69.80%), Query Frame = 2
Query:   65 ETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGA-DRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQEAALAWFQTGVIPPAGTYNYWADPYTLFVLEMGTHGDLPSTGRFQEWANPGFNGEGNTFPSEFEKNLGGSGQSGLTWRTL*FTLRGLGKKKSQWKE--FQPLGNGKMEKWNRLGFWGYVWYKVLVTGIG 790
            E  RQ   ARS  S  G SRKG  +VRAA+TPPVKQG  DRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEP+WLAYGEVINGR+AMLGAVGAIAPE LGK GLIPQE ALAWFQTGVIPPAGTYNYWAD YTLFVLEM   G      RFQ+WA PG    G  +    EK  GGSG          F   G GK +   KE   + + NG++     LG+    + + LVTG+G
Sbjct:   17 EAVRQSFRARSLPSSVGCSRKG--LVRAAATPPVKQGGVDRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMG-FAEHRRFQDWAKPG--SMGKQYFLGLEKGFGGSGNPAYPGGPF-FNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGY----FIQGLVTGVG 251          
BLAST of EY679360 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.936e-19
Identity = 84/248 (33.87%), Postives = 114/248 (45.97%), Query Frame = 2
Query:   80 ILGARSAQSPTGSS-RKGSFVV----RAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQEAALAWFQTGVIPPAGTYNYWADPYTLFVLEMGTHGDLPSTGRFQEWANPGFNGEGNTFPSEFEKNLGGS--GQSGLTWRTL*FTLRGLGK-KKSQWKEF--QPLGNGKMEKWNRLGFWGYVWYKVLVTGIG 790
            I+GA  A    G   R   F+     R+ +   V    DRPLWF       +LDGSLPGD+GFDPLGL SDPE        KW A  E+++ R+AMLGA G   PE L K G++      +W+       AG   Y+ D  TLFV+E+   G        + WA+    G  NT P      L G+  G  G  W    F   G G    ++ KE   + + NG++     +G     W++ + TG G
Sbjct:   26 IVGATKASFLGGKRLRVSKFIAPVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESL------KWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTP---SWY------TAGEQEYFTDTTTLFVIELVLIG----WAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLW----FDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMG----AWFQHIYTGTG 246          
BLAST of EY679360 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.610e-19
Identity = 76/222 (34.23%), Postives = 107/222 (48.20%), Query Frame = 2
Query:  143 RAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQEAALAWFQTGVIPPAGTYNYWADPYTLFVLEMGTHGDLPSTGRFQEWANPGFNGEGNTFPSEFEKNLGGS--GQSGLTWRTL*FTLRGLGK-KKSQWKEF--QPLGNGKMEKWNRLGFWGYVWYKVLVTGIG 790
            R+A+T  V    DRPLWF       +LDGSLPGD+GFDPLGL SDPE        +W    E+++ R+AMLGA G   PE+L K G++      +W+       AG   Y+ D  TLF++E+   G        + WA+    G  NT P      L G+  G  G  W    F   G G    ++ KE   + + NG++     +G     W++ + TG G
Sbjct:   52 RSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESL------RWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTP---SWY------TAGEQEYFTDTTTLFIVELVLIG----WAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLW----FDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMG----AWFQHIYTGTG 246          
BLAST of EY679360 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.299e-15
Identity = 68/202 (33.66%), Postives = 89/202 (44.06%), Query Frame = 2
Query:  146 AASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQEAALAWFQTGVIPPAGTYNYWADPYTLFVLEMGTHGDLPSTGRFQEWANPGFNGEGNTFPSEFEKNLGGSGQSGLTWRTL*FTLRGLGKKKSQWKEFQPLGNGKMEKWNRLGF 748
            +A T   K  A +  W     S  YL GSL GD GFDPLGL+ DPE        KW    E++NGR+AMLG  G + PE+  K G+I       W+       AG   Y+A   TLFV+E           R+Q+  NPG   +   F  ++    G  G  G  +  L F      K+K        L NG++     LGF
Sbjct:   42 SAKTSSFKVEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPENL------KWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII---NVPEWYD------AGKEQYFASSSTLFVIEFILF-HYVEIRRWQDIKNPGSVNQDPIF-KQYSLPKGEVGYPGGIFNPLNFAPTQEAKEKE-------LANGRLAMLAFLGF 219          
BLAST of EY679360 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.696e-15
Identity = 71/215 (33.02%), Postives = 93/215 (43.26%), Query Frame = 2
Query:  107 PTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQEAALAWFQTGVIPPAGTYNYWADPYTLFVLEMGTHGDLPSTGRFQEWANPGFNGEGNTFPSEFEKNLGGSGQSGLTWRTL*FTLRGLGKKKSQWKEFQPLGNGKMEKWNRLGF 748
            P G S   SF V A      K+G     W     S  YL GSLPGD GFDPLGL+ DPE        +W    E++NGR+AMLG  G + PE+    G+I       W+       AG   Y+A   TLFV+E           R+Q+  NPG   +   F  ++    G  G  G  +  L F      K+K        + NG++     LGF
Sbjct:   38 PVGCSPSASFKVEA------KKGE----WLPGLASPGYLTGSLPGDNGFDPLGLAEDPENL------RWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII---NVPKWY------AAGKEEYFASSSTLFVIEF-ILSHYVEIRRWQDIKNPGSVNQDPIF-KQYSLPAGEVGYPGGIFNPLNFAPTLEAKEKE-------IANGRLAMLAFLGF 218          
BLAST of EY679360 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.074e-13
Identity = 51/135 (37.78%), Postives = 68/135 (50.37%), Query Frame = 2
Query:  191 WFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQEAALAWFQTGVIPPAGTYNYWADPYTLFVLEMGTHGDLPSTGRFQEWANPGFNGEGNTFPS 592
            W    QS +YLDGSL GD GFDPL L+ DPE      + +W    +V+NGR+AMLG  G + PE+L KAGL+    A  W +       G   Y+A   T   + M +        R+Q+  NPG   +   F S
Sbjct:   36 WLPGLQSPAYLDGSLEGDNGFDPLALAEDPE------DLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGLM---NAPEWLRL-----PGKETYFASSSTALRVHMSS--TYVEIRRWQDIKNPGSVNQDPIFKS 154          
BLAST of EY679360 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.486e-11
Identity = 49/107 (45.79%), Postives = 63/107 (58.88%), Query Frame = 2
Query:  173 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQEAALAWFQTGV-IPPAGTYNYWADP 481
            GADRP +    S+Q+ SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G I PE+L K G+  Q     WF+ G  I   G  +Y  +P
Sbjct:   50 GADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCIFPELLSKNGV--QFGEAVWFKAGAQIFSEGGLDYLGNP 148          
BLAST of EY679360 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.941e-11
Identity = 54/143 (37.76%), Postives = 79/143 (55.24%), Query Frame = 2
Query:   65 ETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQEAALAWFQTGV-IPPAGTYNYWADP 481
            E +R++LG   A+     +     V ++A +  +  GADRP +    S ++ SYL+G   GDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PE+L K+G+   EA   WF+ G  I   G  +Y  +P
Sbjct:   23 ELSRKVLGNVEARVTMRRT-----VSKSAGSDTIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPET---FARNREL---EVIHARWAMLGALGCLTPELLAKSGVKFGEA--VWFKAGAQIFSEGGLDYLGNP 152          
BLAST of EY679360 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.324e-11
Identity = 49/107 (45.79%), Postives = 62/107 (57.94%), Query Frame = 2
Query:  173 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQEAALAWFQTGV-IPPAGTYNYWADP 481
            G DRP +    S+Q+ SYL G  PGDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PEIL K G+   EA   WF+ G  I   G  +Y  +P
Sbjct:   49 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRWAMLGALGCVFPEILSKNGVKFGEA--VWFKAGAQIFSEGGLDYLGNP 147          
The following BLAST results are available for this feature:
BLAST of EY679360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
CB13_SOLLC2.840e-7965.98Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA7.240e-7563.67Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB12_PETHY1.936e-1933.87Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB12_SOLLC9.610e-1934.23Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB24_ARATH1.299e-1533.66Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB24_PEA1.696e-1533.02Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB120_HORVU2.074e-1337.78Chlorophyll a-b binding protein 1B-20, chloroplast... [more]
CB21_LEMGI1.486e-1145.79Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_PHYPA1.941e-1137.76Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSJ4.324e-1145.79Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-059-C11-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679360 ID=EY679360; Name=EY679360; organism=Citrus sinensis; type=EST; length=892bp
GGAAAAAAGTAATTAAAAAATGGCAACCCAAGCTTTGGTTTCATCATCTC
TTACATCTTCAGTGGAGACTGCGAGACAAATTCTTGGAGCAAGATCAGCT
CAATCCCCAACTGGGTCATCAAGAAAAGGTTCCTTTGTTGTTAGGGCAGC
TTCTACTCCTCCTGTTAAGCAAGGAGCAGACAGACCGTTGTGGTTTGCAT
CCAAACAAAGCCTTTCATACTTGGATGGCAGCCTCCCCGGAGACTATGGA
TTCGACCCACTTGGTCTCTCAGACCCTGAAGGCACAGGAGGGTTCATTGA
GCCAAAATGGCTGGCCTACGGCGAGGTCATCAACGGTCGTTATGCCATGT
TGGGAGCTGTGGGAGCCATTGCACCGGAGATTCTTGGCAAGGCAGGCCTC
ATTCCGCAAGAAGCTGCCCTGGCCTGGTTCCAAACCGGTGTGATCCCCCC
AGCGGGAACATACAACTACTGGGCAGACCCTTACACACTTTTCGTCCTGG
AAATGGGCACTCATGGGGATTTGCCGAGCACCGGAAGATTCCAAGAATGG
GCAAATCCTGGATTCAATGGGGAAGGCAATACTTTCCCTTCGGAATTCGA
AAAAAACTTGGGAGGGTCCGGGCAATCCGGCTTAACCTGGAGGACCCTTT
AATTCACCCTTCGGGGCTTGGGAAAAAAGAAAAGTCAATGGAAGGAATTT
CAACCTCTGGGAAATGGAAAAATGGAAAAATGGAATAGGTTGGGATTTTG
GGGTTACGTTTGGTACAAGGTTTTGGTTACAGGAATAGGGGGTCTAATCA
AAAAACCAATGGGGATAACTTGGGATGGATCCTATAAAAAAAAAATGTTT
TTAGAAAAACCCTCCAGGATTACACTAAAAAAAAAGAAATGT
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