EY679358

Overview
NameEY679358
Unique NameEY679358
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1013
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY679358 vs. ExPASy Swiss-Prot
Match: CID2_ARATH (Polyadenylate-binding protein-interacting protein 2 OS=Arabidopsis thaliana GN=CID2 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.458e-13
Identity = 32/56 (57.14%), Postives = 42/56 (75.00%), Query Frame = 3 
Query:  126 STLNPNAPLFIPAAFRQVEDFSPEWWQLITTSTWYHNYWLSQHQDEDGFYDNGGDD 293
            STLNPNAP+F P  FR+VEDFSP+WW L+TTS W+ ++WLS + + +     GGDD
Sbjct:   10 STLNPNAPVFDPVEFREVEDFSPKWWDLVTTSKWFRDFWLSANSENEFL---GGDD 62
The following BLAST results are available for this feature:
BLAST of EY679358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CID2_ARATH1.458e-1357.14Polyadenylate-binding protein-interacting protein ... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-059-C09-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679358 ID=EY679358; Name=EY679358; organism=Citrus sinensis; type=EST; length=1013bp
CTTTTCCACGAACCGCGGTCCGGTCCGGATTTCCGGGTCGACCCCGCGTC
CGCGAAAAAATATCTTATCTCAAATCAAAGATCAGAAGTGAGAATTGGAC
TTTGATGGCGCTAGTTTCAGGAAGGTCGACGTTGAACCCCAATGCCCCAC
TCTTCATTCCGGCTGCTTTTCGCCAAGTGGAGGATTTCTCCCCCGAATGG
TGGCAGCTGATCACGACCTCCACATGGTACCACAACTACTGGCTCAGCCA
GCATCAAGACGAGGATGGCTTTTATGACAATGGTGGAGATGATGAATTTG
ATGTCAGCAATGTAGCTGACTTGCTTCCAGATACGTTTGACCTTGATGCT
GGCGAAAATTTCTCTAGCATAGAAGCTCAATTCAATGAGTTTGTTATGTC
GTTTGAAAGTGAACTGGAAAACATTTTCATCCCCACTGCCTGCAAATGAT
GCAGATGCACTGATGAGGAATATGAGGGTCTCGATATCTCCCAAATCTTT
CCATGGAAGCTGCCAAATATGTTGAGAAACCGGCCAAGTATGTGAACCCA
ATGTGCAGCCCCCGCCGCATCCCGGCAACCCCGGTTGAAGAAGGAAAAAT
TGTGCTATGGGCTGTTGTTTGCCAGTTTTGTAGTTTTTTGGCTTTTCTGG
TAGTTGCTGTTATCAAGCCAGGGCTCTTAACTTCTGTTTAAATTCCTTGG
TCCTTTCTCGTCCTTTGATTCTCATGGAAACAAAAGAATCTATTGGGGTA
AAAAAATATTGTAAAAAAATATTGTCCACATTTATAGGATTAATTGGATA
CACTGAAATTTTGGTTCTTCTTTTTCTTCTTTCCTCTCATAAAAAATAAA
AATGAAATAAAAAACGAAAACAGAAATAAAAAGGGGGGGGGCGGCTTTAA
AAGGGGACAACTGGTTGAAACTCCGCGCCGGGTGCGGTGCCTAAACCTCA
CTGCTCTCTTCTTGACTTGGTGTAGACTTTAGATATGTATTGAGCTCCGT
GGAGCGCAGTGGT
back to top