EY679353

Overview
NameEY679353
Unique NameEY679353
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length968
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679353 vs. ExPASy Swiss-Prot
Match: G3PA_PEA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Pisum sativum GN=GAPA PE=2 SV=2)

HSP 1 Score: 274.248 bits (700), Expect = 7.642e-73
Identity = 140/178 (78.65%), Postives = 156/178 (87.64%), Query Frame = 2
Query:   20 MASATLSVAKSALQGNGKGFSEFSGLRNSAS-LPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAK-LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPDNLPLGDLGIYLVIEGTGVFVYREGCG 547
            MASAT SVAK A++ NGKGFSEFSGLRNS+  LPF RKSSDDFHS++  QT+A+GSS    + +  +AK LKVAINGFGRIGRNFLRCWHGRKDSPL+V+AINDTGGVKQASHLLKYDSTLGIF+ADVKPVGTDGISVDGKVI+VVS+RNP NLP  +LGI LVIEGTGVFV REG G
Sbjct:    1 MASATFSVAKPAIKANGKGFSEFSGLRNSSRHLPFSRKSSDDFHSLVTFQTNAVGSSGGHKKSLVVEAKQLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTGGVKQASHLLKYDSTLGIFDADVKPVGTDGISVDGKVIKVVSDRNPANLPWKELGIDLVIEGTGVFVDREGAG 178          
BLAST of EY679353 vs. ExPASy Swiss-Prot
Match: G3PA_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPA PE=2 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 5.126e-69
Identity = 135/185 (72.97%), Postives = 155/185 (83.78%), Query Frame = 2
Query:   50 SALQGNGKGFSEFSGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPDNLPLGDLGIYLVIEGTGVFVYREGCGPITFQAGWQESNYISPRAG 604
            S+LQ + KGFSEFSGLR S+++PFGRK++DD  SV+A QTS +G  +S  ++   +AKLKVAINGFGRIGRNFLRCWHGRKDSPL+V+AINDTGGVKQASHLLKYDSTLGIF+ADVKPVGTDGISVDGKVIQVVS+RNP NLP GDLGI LVIEGTGVFV REG G    QAG ++    +P  G
Sbjct:    2 SSLQVSNKGFSEFSGLRTSSAIPFGRKTNDDLLSVVAFQTSVIGGGNS--KRGVVEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTGGVKQASHLLKYDSTLGIFDADVKPVGTDGISVDGKVIQVVSDRNPVNLPWGDLGIDLVIEGTGVFVDREGAGK-HIQAGAKKVLITAPGKG 183          
BLAST of EY679353 vs. ExPASy Swiss-Prot
Match: G3PA_ARATH (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Arabidopsis thaliana GN=GAPA PE=1 SV=3)

HSP 1 Score: 245.743 bits (626), Expect = 2.911e-64
Identity = 131/178 (73.60%), Postives = 147/178 (82.58%), Query Frame = 2
Query:   20 MASATLSVAKSALQGNGKGFSEFSGLRNS-ASLPFGRK-SSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPDNLPLGDLGIYLVIEGTGVFVYREGCG 547
            MAS T SV K        GF+EFSGLR+S ASLPFG+K SSD+F S+++ QTSA+GSS  GYRK   +AKLKVAINGFGRIGRNFLRCWHGRKDSPL+++AINDTGGVKQASHLLKYDSTLGIF+ADVKP G   ISVDGK+IQVVSNRNP  LP  +LGI +VIEGTGVFV REG G
Sbjct:    1 MASVTFSVPK--------GFTEFSGLRSSSASLPFGKKLSSDEFVSIVSFQTSAMGSSG-GYRKGVTEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDIIAINDTGGVKQASHLLKYDSTLGIFDADVKPSGETAISVDGKIIQVVSNRNPSLLPWKELGIDIVIEGTGVFVDREGAG 169          
BLAST of EY679353 vs. ExPASy Swiss-Prot
Match: G3PA_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Spinacia oleracea GN=GAPA PE=1 SV=2)

HSP 1 Score: 237.654 bits (605), Expect = 7.927e-62
Identity = 129/195 (66.15%), Postives = 147/195 (75.38%), Query Frame = 2
Query:   20 MASATLSVAKSALQGNGKGFSEFSGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPDNLPLGDLGIYLVIEGTGVFVYREGCGPITFQAGWQESNYISPRAG 604
            MAS  LS+A  +L+   KGFSEFSGL  S SLPFGRK SDD  + ++ QT+A+G   S    V  +AKLKVAINGFGRIGRNFLRCWHGRKDSPL+VV INDTGGVKQASHLLKYDS LG F+ADVK  G   ISVDGKVI+VVS+RNP NLP GD+GI LVIEGTGVFV R+G G    QAG ++    +P  G
Sbjct:    1 MASNMLSIANPSLRVYNKGFSEFSGLHTS-SLPFGRKGSDDLMAFVSFQTNAVGGKRSSQNGVV-EAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGK-HLQAGAKKVLITAPGKG 192          
BLAST of EY679353 vs. ExPASy Swiss-Prot
Match: G3PA_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Zea mays GN=GAPA PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 7.927e-62
Identity = 133/197 (67.51%), Postives = 153/197 (77.66%), Query Frame = 2
Query:   20 MASATLSVAKSALQGNGKGFSEFSGLRNSASLPFGRKS-SDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKD-SPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPDNLPLGDLGIYLVIEGTGVFVYREGCGPITFQAGWQESNYISPRAG 604
            MAS+ LS     LQ  G G SEFSGLR+SASLP  R + SDDF S ++ +T A+G+S  G R+   +AKLKVAINGFGRIGRNFLRCWHGR D SPL+V+AINDTGGVKQASHLLKYDSTLGIF+ADVKPVG + ISVDGKVI+VVS+RNP NLP G+LGI LVIEGTGVFV REG G    QAG ++    +P  G
Sbjct:    1 MASSMLSATTVPLQQGG-GLSEFSGLRSSASLPMRRNATSDDFMSAVSFRTHAVGTSG-GPRRAPTEAKLKVAINGFGRIGRNFLRCWHGRGDASPLDVIAINDTGGVKQASHLLKYDSTLGIFDADVKPVGDNAISVDGKVIKVVSDRNPSNLPWGELGIDLVIEGTGVFVDREGAGK-HIQAGAKKVLITAPGKG 194          
BLAST of EY679353 vs. ExPASy Swiss-Prot
Match: G3PB_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Spinacia oleracea GN=GAPB PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.475e-47
Identity = 108/201 (53.73%), Postives = 139/201 (69.15%), Query Frame = 2
Query:   80 SEFSGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPDNLPLGDLGIYLVIEGTGVFVYREGCGPITFQAGWQESNYISPRAGGNIQPIVVWMSNGEV*KHKMSLIIVN 682
            ++FSGLR+S S+ F R++S  FH VIA Q +   + ++  R     AKLKVAINGFGRIGRNFLRCWHGRKDSPL+VV +ND+GGVK A+HLLKYDS LG F+ADVK +  +  S+DGK I+VVSNR+P  LP  +LGI +VIEGTGVFV   G G    QAG ++    +P  G +I   VV ++  +   H ++ II N
Sbjct:   40 ADFSGLRSSNSVTFTREAS--FHDVIAAQLTTKPTGAAPVRGETV-AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKSATHLLKYDSILGTFKADVKIIDNETFSIDGKPIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGK-HIQAGAKKVIITAPAKGSDIPTYVVGVNEKDY-GHDVANIISN 235          
BLAST of EY679353 vs. ExPASy Swiss-Prot
Match: G3PB_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPB PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 3.575e-46
Identity = 108/201 (53.73%), Postives = 137/201 (68.16%), Query Frame = 2
Query:   80 SEFSGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPDNLPLGDLGIYLVIEGTGVFVYREGCGPITFQAGWQESNYISPRAGGNIQPIVVWMSNGEV*KHKMSLIIVN 682
            +EF+GLR+S  + F  K S  F  V++ Q +   + S+   K    AKLKVAINGFGRIGRNFLRCWHGRKDSPL+VV +ND+GGVK ASHLLKYDS LG F+ADVK V  + ISVDGK I+VVS+R+P  LP  +LGI +VIEGTGVFV   G G    QAG ++    +P  G +I   VV ++  +   H+++ II N
Sbjct:    9 AEFAGLRSSGCVTFSNKESS-FFDVVSAQLTPKTTRSTPV-KGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDNETISVDGKHIKVVSSRDPLKLPWAELGIDIVIEGTGVFVDGPGAGK-HIQAGAKKVIITAPAKGADIPTYVVGVNEQDY-SHEVADIISN 205          
BLAST of EY679353 vs. ExPASy Swiss-Prot
Match: G3PB_PEA (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 6.097e-46
Identity = 102/201 (50.75%), Postives = 140/201 (69.65%), Query Frame = 2
Query:   83 EFSGLRNSASLPFGRKSSDD-FHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPDNLPLGDLGIYLVIEGTGVFVYREGCGPITFQAGWQESNYISPRAGGNIQPIVVWMSNGEV*KHKMSLIIVN 682
            EFSGL++++ + +   + D  F+ V+A Q ++  + S+  + V   AKLKVAINGFGRIGRNFLRCWHGRKDSPLEV+ +ND+GGVK ASHLLKYDS LG F+A+VK +  + I+VDGK I+VVS+R+P  LP  +LGI +VIEGTGVFV   G G    QAG ++    +P  G +I   V+ ++  +   H+++ II N
Sbjct:   39 EFSGLKSTSCISYVHSARDSSFYDVVAAQLTSKANGSTAVKGVTV-AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVIVVNDSGGVKNASHLLKYDSMLGTFKAEVKILNNETITVDGKPIKVVSSRDPLKLPWAELGIDIVIEGTGVFVDGPGAGK-HIQAGAKKVIITAPAKGADIPTYVIGVNEQDY-GHEVADIISN 236          
BLAST of EY679353 vs. ExPASy Swiss-Prot
Match: G3PB_ARATH (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Arabidopsis thaliana GN=GAPB PE=1 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 2.562e-44
Identity = 109/201 (54.23%), Postives = 133/201 (66.17%), Query Frame = 2
Query:   80 SEFSGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPDNLPLGDLGIYLVIEGTGVFVYREGCGPITFQAGWQESNYISPRAGGNIQPIVVWMSNGEV*KHKMSLIIVN 682
            +EFSGLR S+    G ++S  F   +A Q      ++S   +    AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVV +ND+GGVK ASHLLKYDS LG F+A+VK V  + ISVDGK+I+VVSNR+P  LP  +LGI +VIEGTGVFV   G G    QAG  +    +P  G +I P  V   N +   H ++ II N
Sbjct:   39 AEFSGLRMSS---IGGEAS--FFDAVAAQIIPKAVTTSTPVRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVVLNDSGGVKNASHLLKYDSMLGTFKAEVKIVDNETISVDGKLIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGK-HIQAGASKVIITAPAKGADI-PTYVMGVNEQDYGHDVANIISN 232          
BLAST of EY679353 vs. ExPASy Swiss-Prot
Match: G3PA_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Chlamydomonas reinhardtii GN=GAPA PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.718e-40
Identity = 96/177 (54.24%), Postives = 121/177 (68.36%), Query Frame = 2
Query:  167 TSALGSSSSGYRKVAAQA--------KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPDNLPLGDLGIYLVIEGTGVFVYREGCGPITFQAGWQESNYISPRAGGNIQPIVVWMSNGEV*KHKMSLI 673
            T +  SS SG R  AA+A        K++VAINGFGRIGRNFLRCWHGR+++ L+VVAIND+GGVKQASHLLKYDSTLG F ADVK V    ISVDGK I++VS+R+P  LP  ++ I LVIEGTGVF+ + G G    QAG  +    +P    +I   VV ++ G+  KH+  +I
Sbjct:   11 TGSAVSSKSGVRAKAARAVVDVRAEKKIRVAINGFGRIGRNFLRCWHGRQNTLLDVVAINDSGGVKQASHLLKYDSTLGTFAADVKIVDDSHISVDGKQIKIVSSRDPLQLPWKEMNIDLVIEGTGVFIDKVGAGK-HIQAGASKVLITAPAKDKDIPTFVVGVNEGDY-KHEYPII 185          
The following BLAST results are available for this feature:
BLAST of EY679353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
G3PA_PEA7.642e-7378.65Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_TOBAC5.126e-6972.97Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_ARATH2.911e-6473.60Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_SPIOL7.927e-6266.15Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_MAIZE7.927e-6267.51Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PB_SPIOL2.475e-4753.73Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_TOBAC3.575e-4653.73Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_PEA6.097e-4650.75Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_ARATH2.562e-4454.23Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PA_CHLRE1.718e-4054.24Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-059-C04-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679353 ID=EY679353; Name=EY679353; organism=Citrus sinensis; type=EST; length=968bp
CATCCAGCAAATACCTATCATGGCTTCGGCCACTCTCTCTGTAGCCAAAT
CAGCTCTTCAGGGAAATGGTAAGGGATTCTCAGAATTCTCAGGTCTACGC
AACTCTGCAAGCCTTCCTTTTGGCAGGAAATCTTCTGATGACTTCCATTC
AGTCATTGCTCTCCAGACCTCTGCTTTAGGAAGCAGCAGCAGCGGGTACA
GGAAGGTTGCTGCTCAGGCAAAGCTGAAGGTTGCAATCAATGGGTTTGGT
AGAATTGGTAGGAACTTCTTGAGGTGCTGGCACGGCCGCAAGGACTCTCC
ACTTGAAGTCGTTGCCATCAATGACACCGGAGGTGTCAAGCAGGCCTCTC
ACCTCCTCAAGTACGACTCCACCCTTGGCATCTTTGAAGCCGATGTTAAA
CCAGTTGGTACTGATGGCATCTCTGTTGATGGCAAGGTCATCCAGGTTGT
TTCTAACCGCAACCCCGACAATCTCCCCTTGGGGGACTTGGGCATCTACC
TTGTGATTGAAGGGACAGGAGTGTTTGTTTACAGAGAGGGGTGCGGGCCA
ATCACATTTCAGGCTGGTTGGCAAGAAAGTAATTATATAAGCCCCCGGGC
AGGGGGGAACATCCAACCCATTGTTGTTTGGATGTCAAATGGTGAAGTTT
AAAAGCACAAAATGAGCCTAATTATAGTAAATGTTTTATTGTACAACACA
ATGGTCTAGGATCACTTAGAAGAAGGTTTCTTTGAACCACATAGTATGGG
CATTATTCAAAGGGGAACAAAGGACCCACAACATCTTACATAAATGTGTA
TTATCTAAAAGGTAATCTATATAGTTAATACCAACCGTAGAAATAAAGAA
GTGGGAACAAAATAGTCATGACTATCTATAATATTATCCCCCCAACACTC
CATTTGTGATGGCTGAGACAAAAGATACTGGCAGGACCCCTGTGCTCTTT
CTCCCCAGTTTCATCACA
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