EY679352

Overview
NameEY679352
Unique NameEY679352
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length932
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679352 vs. ExPASy Swiss-Prot
Match: SC61A_DICDI (Protein transport protein Sec61 subunit alpha OS=Dictyostelium discoideum GN=sec61a PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 1.080e-52
Identity = 111/222 (50.00%), Postives = 155/222 (69.82%), Query Frame = 3
Query:  165 GFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGESSCLCSLRNVW*C*PTWSREWPSYL---------VQLCYGGIMGSVLNELPSKGKGLGTGIPLIIATNVWGNFLGESLLFPPTITMGTGKQNFKG 803
            GFR L +V+PF + +PEV   DRK+PFREKV++T I LFIFLVCSQ+PLYGI ST  +DPFYW +VI+ASNRGT+MELGI+PIVTSG+VMQLLAG+K+IE+D +V+ DR L + AQKL G++I +G+      +  +W    + S   P+ L         +QL + GI+  +L+EL  KG G+G+GI L IATN+    + ++   P T+++G G + F+G
Sbjct:    2 GFRFLDIVKPFTSLVPEVGQPDRKIPFREKVLWTAICLFIFLVCSQIPLYGIRSTDSSDPFYWAKVIMASNRGTLMELGISPIVTSGMVMQLLAGAKLIEIDQSVKADRDLFSAAQKLFGMLICVGQ-----GVAYIW----SGSYGDPAVLGFGNCFLIVLQLFFAGIIVMLLDELLQKGYGIGSGISLFIATNICETIVWKT-FSPTTVSVGKGTE-FEG 212          
BLAST of EY679352 vs. ExPASy Swiss-Prot
Match: SC61A_PYRSA (Protein transport protein Sec61 subunit alpha OS=Pyrenomonas salina PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.320e-50
Identity = 113/213 (53.05%), Postives = 144/213 (67.61%), Query Frame = 3
Query:  165 GFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGESSCLCSLRNVW*C*PTWSREWPSYLVQLCYGGIMGSVLNELPSKGKGLGTGIPLIIATNVWGNFLGESLLFPPTITMGTGKQNFKG 803
            G R L LV+PF+  LPEV SA +K+P  EK+++T I +F++LVC Q+PLYGI +T  +DPFYWMRVILASN+GT+MELGI+PIVTSGLVMQLLAGSKII+VD   +ED+ L  GAQKLLGI+I IGES                +      +VQL   GI+   L+EL  KG G+G+ I L IATNV  + + +S   P TI  G G + F+G
Sbjct:    5 GVRFLTLVKPFMFALPEVSSATKKIPVNEKLLWTSIVVFLYLVCCQIPLYGITNTKSSDPFYWMRVILASNKGTLMELGISPIVTSGLVMQLLAGSKIIDVDQGTKEDKTLFQGAQKLLGILITIGESVAYVLSGMYGDVKDLGAGNAILIIVQLFTSGIIVICLDELLQKGYGIGSAISLFIATNVCESIVWKS-FSPTTINTGRGTE-FEG 215          
BLAST of EY679352 vs. ExPASy Swiss-Prot
Match: S61A1_ONCMY (Protein transport protein Sec61 subunit alpha isoform A OS=Oncorhynchus mykiss GN=sec61aa PE=2 SV=3)

HSP 1 Score: 200.29 bits (508), Expect = 1.320e-50
Identity = 111/213 (52.11%), Postives = 147/213 (69.01%), Query Frame = 3
Query:  165 GFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGESSCLCSLRNVW*C*PTWSREWPSYLVQLCYGGIMGSVLNELPSKGKGLGTGIPLIIATNVWGNFLGESLLFPPTITMGTGKQNFKG 803
            G + L +++PF A LPE+Q  +RK+ FREKV++T I+LFIFLVC Q+PL+GI S+  ADPFYWMRVILASNRGT+MELGI+PIVTSGL+MQLLAG+KIIEV  +  +DRAL NGAQKL G+II IG+S                +      ++QL   G++  +L+EL  KG GLG+GI L IATN+    + ++   P T+  G G + F+G
Sbjct:    2 GIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEV-GDTPKDRALFNGAQKLFGMIITIGQSIVYVMTGMYGDPSEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKA-FSPTTVNTGRGTE-FEG 211          
BLAST of EY679352 vs. ExPASy Swiss-Prot
Match: S61A2_MOUSE (Protein transport protein Sec61 subunit alpha isoform 2 OS=Mus musculus GN=Sec61a2 PE=2 SV=3)

HSP 1 Score: 199.519 bits (506), Expect = 2.252e-50
Identity = 111/213 (52.11%), Postives = 147/213 (69.01%), Query Frame = 3
Query:  165 GFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGESSCLCSLRNVW*C*PTWSREWPSYLVQLCYGGIMGSVLNELPSKGKGLGTGIPLIIATNVWGNFLGESLLFPPTITMGTGKQNFKG 803
            G + L +++PF A LPE+Q  +RK+ FREKV++T I+LFIFLVC Q+PL+GI S+  ADPFYWMRVILASNRGT+MELGI+PIVTSGL+MQLLAG+KIIEV  +  +DRAL NGAQKL G+II IG++                +      ++QL   G++  +L+EL  KG GLG+GI L IATN+    + ++   P TI  G G + F+G
Sbjct:    2 GIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEV-GDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKA-FSPTTINTGRGTE-FEG 211          
BLAST of EY679352 vs. ExPASy Swiss-Prot
Match: S61A2_HUMAN (Protein transport protein Sec61 subunit alpha isoform 2 OS=Homo sapiens GN=SEC61A2 PE=2 SV=3)

HSP 1 Score: 199.519 bits (506), Expect = 2.252e-50
Identity = 111/213 (52.11%), Postives = 147/213 (69.01%), Query Frame = 3
Query:  165 GFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGESSCLCSLRNVW*C*PTWSREWPSYLVQLCYGGIMGSVLNELPSKGKGLGTGIPLIIATNVWGNFLGESLLFPPTITMGTGKQNFKG 803
            G + L +++PF A LPE+Q  +RK+ FREKV++T I+LFIFLVC Q+PL+GI S+  ADPFYWMRVILASNRGT+MELGI+PIVTSGL+MQLLAG+KIIEV  +  +DRAL NGAQKL G+II IG++                +      ++QL   G++  +L+EL  KG GLG+GI L IATN+    + ++   P TI  G G + F+G
Sbjct:    2 GIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEV-GDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKA-FSPTTINTGRGTE-FEG 211          
BLAST of EY679352 vs. ExPASy Swiss-Prot
Match: S61A2_BOVIN (Protein transport protein Sec61 subunit alpha isoform 2 OS=Bos taurus GN=SEC61A2 PE=2 SV=3)

HSP 1 Score: 199.519 bits (506), Expect = 2.252e-50
Identity = 111/213 (52.11%), Postives = 147/213 (69.01%), Query Frame = 3
Query:  165 GFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGESSCLCSLRNVW*C*PTWSREWPSYLVQLCYGGIMGSVLNELPSKGKGLGTGIPLIIATNVWGNFLGESLLFPPTITMGTGKQNFKG 803
            G + L +++PF A LPE+Q  +RK+ FREKV++T I+LFIFLVC Q+PL+GI S+  ADPFYWMRVILASNRGT+MELGI+PIVTSGL+MQLLAG+KIIEV  +  +DRAL NGAQKL G+II IG++                +      ++QL   G++  +L+EL  KG GLG+GI L IATN+    + ++   P TI  G G + F+G
Sbjct:    2 GIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEV-GDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKA-FSPTTINTGRGTE-FEG 211          
BLAST of EY679352 vs. ExPASy Swiss-Prot
Match: SC61A_HARAN (Protein transport protein Sec61 subunit alpha OS=Harpagifer antarcticus GN=sec61a PE=2 SV=3)

HSP 1 Score: 199.134 bits (505), Expect = 2.941e-50
Identity = 110/213 (51.64%), Postives = 147/213 (69.01%), Query Frame = 3
Query:  165 GFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGESSCLCSLRNVW*C*PTWSREWPSYLVQLCYGGIMGSVLNELPSKGKGLGTGIPLIIATNVWGNFLGESLLFPPTITMGTGKQNFKG 803
            G + L +++PF A LPE+Q  +RK+ FREKV++T I+LFIFLVC Q+PL+GI S+  ADPFYWMRVILASNRGT+MELGI+PIVTSGL+MQLLAG+KIIEV  +  +DRAL NGAQKL G+II IG++                +      ++QL   G++  +L+EL  KG GLG+GI L IATN+    + ++   P T+  G G + F+G
Sbjct:    2 GIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEV-GDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPSEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKA-FSPTTVNTGRGTE-FEG 211          
BLAST of EY679352 vs. ExPASy Swiss-Prot
Match: SC61A_GADOC (Protein transport protein Sec61 subunit alpha OS=Gadus ogac GN=sec61a PE=2 SV=3)

HSP 1 Score: 199.134 bits (505), Expect = 2.941e-50
Identity = 110/213 (51.64%), Postives = 147/213 (69.01%), Query Frame = 3
Query:  165 GFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGESSCLCSLRNVW*C*PTWSREWPSYLVQLCYGGIMGSVLNELPSKGKGLGTGIPLIIATNVWGNFLGESLLFPPTITMGTGKQNFKG 803
            G + L +++PF A LPE+Q  +RK+ FREKV++T I+LFIFLVC Q+PL+GI S+  ADPFYWMRVILASNRGT+MELGI+PIVTSGL+MQLLAG+KIIEV  +  +DRAL NGAQKL G+II IG++                +      ++QL   G++  +L+EL  KG GLG+GI L IATN+    + ++   P T+  G G + F+G
Sbjct:    2 GIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEV-GDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPSEMGAGICLVIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKA-FSPTTVNTGRGTE-FEG 211          
BLAST of EY679352 vs. ExPASy Swiss-Prot
Match: SC61A_DISMA (Protein transport protein Sec61 subunit alpha OS=Dissostichus mawsoni GN=sec61a PE=2 SV=3)

HSP 1 Score: 199.134 bits (505), Expect = 2.941e-50
Identity = 110/213 (51.64%), Postives = 147/213 (69.01%), Query Frame = 3
Query:  165 GFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGESSCLCSLRNVW*C*PTWSREWPSYLVQLCYGGIMGSVLNELPSKGKGLGTGIPLIIATNVWGNFLGESLLFPPTITMGTGKQNFKG 803
            G + L +++PF A LPE+Q  +RK+ FREKV++T I+LFIFLVC Q+PL+GI S+  ADPFYWMRVILASNRGT+MELGI+PIVTSGL+MQLLAG+KIIEV  +  +DRAL NGAQKL G+II IG++                +      ++QL   G++  +L+EL  KG GLG+GI L IATN+    + ++   P T+  G G + F+G
Sbjct:    2 GIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEV-GDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPSEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKA-FSPTTVNTGRGTE-FEG 211          
BLAST of EY679352 vs. ExPASy Swiss-Prot
Match: S61A2_ONCMY (Protein transport protein Sec61 subunit alpha isoform B OS=Oncorhynchus mykiss GN=sec61ab PE=2 SV=3)

HSP 1 Score: 199.134 bits (505), Expect = 2.941e-50
Identity = 110/213 (51.64%), Postives = 147/213 (69.01%), Query Frame = 3
Query:  165 GFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGESSCLCSLRNVW*C*PTWSREWPSYLVQLCYGGIMGSVLNELPSKGKGLGTGIPLIIATNVWGNFLGESLLFPPTITMGTGKQNFKG 803
            G + L +++PF A LPE+Q  +RK+ FREKV++T I+LFIFLVC Q+PL+GI S+  ADPFYWMRVILASNRGT+MELGI+PIVTSGL+MQLLAG+KIIEV  +  +DRAL NGAQKL G+II IG++                +      ++QL   G++  +L+EL  KG GLG+GI L IATN+    + ++   P T+  G G + F+G
Sbjct:    2 GIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEV-GDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPSDMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKA-FSPTTVNTGRGTE-FEG 211          
The following BLAST results are available for this feature:
BLAST of EY679352 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
SC61A_DICDI1.080e-5250.00Protein transport protein Sec61 subunit alpha OS=D... [more]
SC61A_PYRSA1.320e-5053.05Protein transport protein Sec61 subunit alpha OS=P... [more]
S61A1_ONCMY1.320e-5052.11Protein transport protein Sec61 subunit alpha isof... [more]
S61A2_MOUSE2.252e-5052.11Protein transport protein Sec61 subunit alpha isof... [more]
S61A2_HUMAN2.252e-5052.11Protein transport protein Sec61 subunit alpha isof... [more]
S61A2_BOVIN2.252e-5052.11Protein transport protein Sec61 subunit alpha isof... [more]
SC61A_HARAN2.941e-5051.64Protein transport protein Sec61 subunit alpha OS=H... [more]
SC61A_GADOC2.941e-5051.64Protein transport protein Sec61 subunit alpha OS=G... [more]
SC61A_DISMA2.941e-5051.64Protein transport protein Sec61 subunit alpha OS=D... [more]
S61A2_ONCMY2.941e-5051.64Protein transport protein Sec61 subunit alpha isof... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-059-C03-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679352 ID=EY679352; Name=EY679352; organism=Citrus sinensis; type=EST; length=932bp
TGGTGGGTGTTGGGGCGGCGGTCGGGTCGGGATTCCCGGGTCGACCCCGC
GTCCGCGTTTTAGCAGAATTCAGATTCATTTAACGTAACGTTTCTCTACG
GTTCTCCGATCCGCGAGTTCGTACGATTAGGTTGGTCTAGTTGGGACTGA
ATAAGATGGGAGGTGGATTCAGAGTGCTCCATCTTGTCCGGCCTTTTCTT
GCATTCCTTCCTGAGGTTCAGAGCGCTGACAGGAAGGTTCCTTTCAGAGA
GAAGGTTATCTACACTGTGATCTCTCTCTTCATATTCTTGGTGTGCAGTC
AGCTCCCGCTGTATGGCATACACTCGACAACTGGTGCGGATCCATTCTAT
TGGATGCGTGTTATTCTTGCTTCGAACCGTGGGACTGTGATGGAGCTTGG
TATCACCCCAATTGTGACATCTGGATTGGTGATGCAACTACTTGCCGGGT
CAAAGATCATTGAAGTGGACAATAATGTTCGCGAAGATCGTGCCCTATTA
AATGGTGCACAGAAGTTGCTGGGCATCATCATAGCTATTGGTGAAAGCAG
TTGCCTATGTTCTCTCAGGAATGTATGGTAGTGTTAACCAACTTGGAGTA
GGGAATGGCCTTCCTATCTTGTTCAGCTCTGCTATGGTGGAATAATGGGA
TCTGTTTTAAATGAACTCCCTTCAAAAGGTAAGGGCCTGGGAACCGGGAT
CCCCCTAATCATTGCAACCAATGTTTGGGGAAACTTCCTCGGGGAAAGCC
TTTTATTCCCCCCCACTATTACAATGGGAACGGGGAAGCAAAATTTTAAG
GGCTGGAATTTGCTTTTTTCCCCCTTTTGAATACATCCAATGAGGCAATT
TTCGGGGCCTTGTGGGAAAACTTTTATTCCGGAAGATAAAGCCCTAAAGG
TAGGAAGACCCATGTTGGGTCCACAGGCATGG
back to top