EY679347

Overview
NameEY679347
Unique NameEY679347
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length974
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY679347 vs. ExPASy Swiss-Prot
Match: RS52_ARATH (40S ribosomal protein S5-2 OS=Arabidopsis thaliana GN=RPS5B PE=1 SV=2)

HSP 1 Score: 291.967 bits (746), Expect = 2.003e-81
Identity = 147/162 (90.74%), Postives = 156/162 (96.30%), Query Frame = 1 
Query:    1 ISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIRTIAECLADELINAAKGSSNSLCHPEK 486
            ISL DYIGVQAAKHAT+VPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLL+D NPIQVI+DA++NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+LITTGARE+AFRNI+TIAECLADELINAAKGSSNS    +K
Sbjct:   35 ISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKK 196

HSP 2 Score: 33.113 bits (74), Expect = 2.003e-81
Identity = 14/18 (77.78%), Postives = 18/18 (100.00%), Query Frame = 2 
Query:  467 AYAIQKKDEIDRMAKANR 520
            +YAI+KKDEI+R+AKANR
Sbjct:  190 SYAIKKKDEIERVAKANR 207
[Close]
BLAST of EY679347 vs. ExPASy Swiss-Prot
Match: RS5_CICAR (40S ribosomal protein S5 (Fragment) OS=Cicer arietinum GN=RPS5 PE=2 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 3.409e-81
Identity = 146/162 (90.12%), Postives = 155/162 (95.68%), Query Frame = 1 
Query:    1 ISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIRTIAECLADELINAAKGSSNSLCHPEK 486
            +SL DYIGV  +KHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI+KHAMEIIHLLTDQNPIQVIVDAV+NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYL+TTGARE+AFRNI++IAECLADELINAAKGSSNS    +K
Sbjct:   25 VSLIDYIGVVPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKSIAECLADELINAAKGSSNSYAIKKK 186

HSP 2 Score: 33.113 bits (74), Expect = 3.409e-81
Identity = 14/18 (77.78%), Postives = 18/18 (100.00%), Query Frame = 2 
Query:  467 AYAIQKKDEIDRMAKANR 520
            +YAI+KKDEI+R+AKANR
Sbjct:  180 SYAIKKKDEIERVAKANR 197
[Close]
BLAST of EY679347 vs. ExPASy Swiss-Prot
Match: RS51_ARATH (40S ribosomal protein S5-1 OS=Arabidopsis thaliana GN=RPS5A PE=1 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 2.854e-80
Identity = 144/162 (88.89%), Postives = 155/162 (95.68%), Query Frame = 1 
Query:    1 ISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIRTIAECLADELINAAKGSSNSLCHPEK 486
            ISL DYIGVQ +KHAT+VPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLL+D NPIQVI+DA++NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+L+TTGARE+AFRNI+TIAECLADELINAAKGSSNS    +K
Sbjct:   35 ISLVDYIGVQPSKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKK 196

HSP 2 Score: 33.113 bits (74), Expect = 2.854e-80
Identity = 14/18 (77.78%), Postives = 18/18 (100.00%), Query Frame = 2 
Query:  467 AYAIQKKDEIDRMAKANR 520
            +YAI+KKDEI+R+AKANR
Sbjct:  190 SYAIKKKDEIERVAKANR 207
[Close]
BLAST of EY679347 vs. ExPASy Swiss-Prot
Match: RS5_NICPL (40S ribosomal protein S5 (Fragment) OS=Nicotiana plumbaginifolia GN=RPS5 PE=2 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 2.190e-71
Identity = 132/143 (92.31%), Postives = 136/143 (95.10%), Query Frame = 1 
Query:   58 HTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIRTIAECLADELINAAKGSSNSLCHPEK 486
            HTAGRY  KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTD NPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRV+QAIYL+TTGARESAFRNI+TIAECLADELINAAKGSSNS    +K
Sbjct:    1 HTAGRYQAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDLNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVSQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKK 143

HSP 2 Score: 33.113 bits (74), Expect = 2.190e-71
Identity = 14/18 (77.78%), Postives = 18/18 (100.00%), Query Frame = 2 
Query:  467 AYAIQKKDEIDRMAKANR 520
            +YAI+KKDEI+R+AKANR
Sbjct:  137 SYAIKKKDEIERVAKANR 154
[Close]
BLAST of EY679347 vs. ExPASy Swiss-Prot
Match: RS5_HUMAN (40S ribosomal protein S5 OS=Homo sapiens GN=RPS5 PE=1 SV=4)

HSP 1 Score: 257.299 bits (656), Expect = 1.824e-70
Identity = 128/162 (79.01%), Postives = 146/162 (90.12%), Query Frame = 1 
Query:    1 ISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIRTIAECLADELINAAKGSSNSLCHPEK 486
            ISL DYI V+  K+A Y+PH+AGRY+ KRFRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHA EIIHLLT +NP+QV+V+A+INSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+L+ TGARE+AFRNI+TIAECLADELINAAKGSSNS    +K
Sbjct:   33 ISLQDYIAVKE-KYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKK 193

HSP 2 Score: 31.187 bits (69), Expect = 1.824e-70
Identity = 12/18 (66.67%), Postives = 18/18 (100.00%), Query Frame = 2 
Query:  467 AYAIQKKDEIDRMAKANR 520
            +YAI+KKDE++R+AK+NR
Sbjct:  187 SYAIKKKDELERVAKSNR 204
[Close]
BLAST of EY679347 vs. ExPASy Swiss-Prot
Match: RS5_BOVIN (40S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=2 SV=3)

HSP 1 Score: 257.299 bits (656), Expect = 1.824e-70
Identity = 128/162 (79.01%), Postives = 146/162 (90.12%), Query Frame = 1 
Query:    1 ISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIRTIAECLADELINAAKGSSNSLCHPEK 486
            ISL DYI V+  K+A Y+PH+AGRY+ KRFRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHA EIIHLLT +NP+QV+V+A+INSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+L+ TGARE+AFRNI+TIAECLADELINAAKGSSNS    +K
Sbjct:   33 ISLQDYIAVKE-KYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKK 193

HSP 2 Score: 31.187 bits (69), Expect = 1.824e-70
Identity = 12/18 (66.67%), Postives = 18/18 (100.00%), Query Frame = 2 
Query:  467 AYAIQKKDEIDRMAKANR 520
            +YAI+KKDE++R+AK+NR
Sbjct:  187 SYAIKKKDELERVAKSNR 204
[Close]
BLAST of EY679347 vs. ExPASy Swiss-Prot
Match: RS5_MOUSE (40S ribosomal protein S5 OS=Mus musculus GN=Rps5 PE=2 SV=3)

HSP 1 Score: 255.373 bits (651), Expect = 6.881e-70
Identity = 127/162 (78.40%), Postives = 145/162 (89.51%), Query Frame = 1 
Query:    1 ISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIRTIAECLADELINAAKGSSNSLCHPEK 486
            ISL DYI V+  K+A Y+PH+AGRY+ KRFRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHA EIIHLLT +NP+QV+V+A+INSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+L+ TGARE+AFRNI+ IAECLADELINAAKGSSNS    +K
Sbjct:   33 ISLQDYIAVKE-KYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKNIAECLADELINAAKGSSNSYAIKKK 193

HSP 2 Score: 31.187 bits (69), Expect = 6.881e-70
Identity = 12/18 (66.67%), Postives = 18/18 (100.00%), Query Frame = 2 
Query:  467 AYAIQKKDEIDRMAKANR 520
            +YAI+KKDE++R+AK+NR
Sbjct:  187 SYAIKKKDELERVAKSNR 204
[Close]
BLAST of EY679347 vs. ExPASy Swiss-Prot
Match: RS5_RAT (40S ribosomal protein S5 OS=Rattus norvegicus GN=Rps5 PE=2 SV=3)

HSP 1 Score: 250.751 bits (639), Expect = 1.665e-68
Identity = 125/162 (77.16%), Postives = 143/162 (88.27%), Query Frame = 1 
Query:    1 ISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIRTIAECLADELINAAKGSSNSLCHPEK 486
            ISL DYI V+  K+A Y+PH+AGRY+   FRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHA EIIHLLT +NP+QV+V+A+INSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+L+ TGARE+AFRNI+TIAECLADELINA KGSSNS    +K
Sbjct:   33 ISLQDYIAVKE-KYAKYLPHSAGRYAANGFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINARKGSSNSYAIKKK 193

HSP 2 Score: 31.187 bits (69), Expect = 1.665e-68
Identity = 12/18 (66.67%), Postives = 18/18 (100.00%), Query Frame = 2 
Query:  467 AYAIQKKDEIDRMAKANR 520
            +YAI+KKDE++R+AK+NR
Sbjct:  187 SYAIKKKDELERVAKSNR 204
[Close]
BLAST of EY679347 vs. ExPASy Swiss-Prot
Match: RS5_NEUCR (40S ribosomal protein S5 OS=Neurospora crassa GN=rps-5 PE=3 SV=2)

HSP 1 Score: 249.98 bits (637), Expect = 2.830e-68
Identity = 122/162 (75.31%), Postives = 144/162 (88.89%), Query Frame = 1 
Query:    1 ISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIRTIAECLADELINAAKGSSNSLCHPEK 486
            ISL+DYI +++     Y+PH+AGRY+ KRFRKA CPI+ERLTNSLMMHGRNNGKKLMAVRIV HA EIIHL+TDQNPIQ+ VDA++N GPRED+TRIGSAG VRRQAVD+SPLRRVNQAI L+TTGARE++FRN+++IAECLA+ELINAAKGSSNS    +K
Sbjct:   44 ISLTDYIQIRSP---VYLPHSAGRYAAKRFRKANCPIIERLTNSLMMHGRNNGKKLMAVRIVAHAFEIIHLMTDQNPIQIAVDAIVNCGPREDSTRIGSAGTVRRQAVDVSPLRRVNQAIALLTTGAREASFRNVKSIAECLAEELINAAKGSSNSYAIKKK 202

HSP 2 Score: 31.187 bits (69), Expect = 2.830e-68
Identity = 12/18 (66.67%), Postives = 18/18 (100.00%), Query Frame = 2 
Query:  467 AYAIQKKDEIDRMAKANR 520
            +YAI+KKDE++R+AK+NR
Sbjct:  196 SYAIKKKDELERVAKSNR 213
[Close]
BLAST of EY679347 vs. ExPASy Swiss-Prot
Match: RS5_PODCA (40S ribosomal protein S5 OS=Podocoryne carnea GN=RPS5 PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 1.067e-67
Identity = 121/162 (74.69%), Postives = 145/162 (89.51%), Query Frame = 1 
Query:    1 ISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIRTIAECLADELINAAKGSSNSLCHPEK 486
            ISL+DYI V+   HA Y+PHTA RY+VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIV+H+ EI+HLLT +NP+Q++ +A+ NSGPRED+TRIG AG VRRQAVD++PLRRVNQAI+L+ TGARE++FRNI++IAECLADELINAA+GSSNS    +K
Sbjct:   39 ISLTDYIAVKD-NHAVYLPHTAARYAVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVRHSFEIMHLLTGENPLQLVCEAISNSGPREDSTRIGRAGTVRRQAVDVAPLRRVNQAIWLLCTGAREASFRNIKSIAECLADELINAARGSSNSYAIKKK 199

HSP 2 Score: 31.187 bits (69), Expect = 1.067e-67
Identity = 12/18 (66.67%), Postives = 18/18 (100.00%), Query Frame = 2 
Query:  467 AYAIQKKDEIDRMAKANR 520
            +YAI+KKDE++R+AK+NR
Sbjct:  193 SYAIKKKDELERVAKSNR 210
The following BLAST results are available for this feature:
BLAST of EY679347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RS52_ARATH2.003e-8190.7440S ribosomal protein S5-2 OS=Arabidopsis thaliana... [more]
RS5_CICAR3.409e-8190.1240S ribosomal protein S5 (Fragment) OS=Cicer ariet... [more]
RS51_ARATH2.854e-8088.8940S ribosomal protein S5-1 OS=Arabidopsis thaliana... [more]
RS5_NICPL2.190e-7192.3140S ribosomal protein S5 (Fragment) OS=Nicotiana p... [more]
RS5_HUMAN1.824e-7079.0140S ribosomal protein S5 OS=Homo sapiens GN=RPS5 P... [more]
RS5_BOVIN1.824e-7079.0140S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=... [more]
RS5_MOUSE6.881e-7078.4040S ribosomal protein S5 OS=Mus musculus GN=Rps5 P... [more]
RS5_RAT1.665e-6877.1640S ribosomal protein S5 OS=Rattus norvegicus GN=R... [more]
RS5_NEUCR2.830e-6875.3140S ribosomal protein S5 OS=Neurospora crassa GN=r... [more]
RS5_PODCA1.067e-6774.6940S ribosomal protein S5 OS=Podocoryne carnea GN=R... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-059-B10-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679347 ID=EY679347; Name=EY679347; organism=Citrus sinensis; type=EST; length=974bp
ATCTCGTTGAGTGATTATATTGGCGTGCAAGCGGCCAAGCACGCTACTTA
TGTGCCTCACACTGCTGGGAGGTACTCAGTTAAGCGTTTCCGGAAGGCCC
AATGTCCCATTGTTGAGAGGCTTACGAACTCTCTTATGATGCACGGTCGT
AACAACGGCAAGAAATTGATGGCCGTCAGGATTGTTAAGCATGCCATGGA
GATCATTCACCTTTTGACCGACCAGAACCCAATTCAAGTCATTGTTGATG
CTGTCATCAACAGTGGTCCAAGGGAAGATGCTACCCGTATTGGATCTGCT
GGTGTTGTTAGGCGTCAGGCTGTGGATATTTCCCCATTGCGCCGTGTGAA
TCAAGCGATCTATCTAATCACCACTGGTGCTCGTGAATCTGCTTTTCGTA
ACATCAGGACTATTGCCGAATGCTTGGCCGATGAACTCATTAATGCTGCC
AAGGGTTCATCTAACAGCTTATGCCATCCAGAAAAAGGATGAGATTGATA
GAATGGCTAAAGCCAATCGCTGAAGTTCTGAAAATTGGATAATCCTATGC
ATTAAAGTTGTACTTTTTTTCATAAAAAAACTTTTTGGAACAATGGTTTA
TGTGCCTCTTTTGCAATTTTACCAATGGTTTGTTTCAAGGTTTTGAAGAG
TATGAAATTTGAGGATGGCTATTACTGGCTTTCCTGGGTATCCATTTTGC
CAAGGGGGGGGGAATGTTACAAAAGGAATTCTGGCCAAATTAAAATCAAA
TCTAGAAATTAAATGGGTTATTATAATTCCCGCCTGGTTGTGTATTTTAA
AAAATATAAAATATAAGGGGGGGGCCTCCTTCCTTGATGGGAACCCCGTT
TTACTTTATGGTCGTTGCTTGGTAAAACTTTTAAAAAACCTCATTCTTTA
ATAATTTCTACTAAATTATTACTAATTATATGGTGGACTGTCTTTTTCTT
ATTATGGTCCACAAATGCAAAGCG
back to top