EY679345

Overview
NameEY679345
Unique NameEY679345
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length965
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY679345 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.660e-27
Identity = 64/120 (53.33%), Postives = 78/120 (65.00%), Query Frame = 1 
Query:   52 MLEKLWDDVVAGPQPDRGLGRLRKITTTPLAVKEGGEAESSSGKFQRSLSMXXXXXXXXXXXXXXXXXXXRKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYDWLYSGETRSKH 411
            +L+KLWDD+VAGPQP+RGLG LRK+   PL +K+ GE+           S                    RKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPTVYDW+YSGETRSKH
Sbjct:    3 LLDKLWDDIVAGPQPERGLGMLRKVPQ-PLNLKDEGES-----------SKITMPTTPTTPVTPTTPISARKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYDWMYSGETRSKH 109
The following BLAST results are available for this feature:
BLAST of EY679345 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN1.660e-2753.33Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-059-B08-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679345 ID=EY679345; Name=EY679345; organism=Citrus sinensis; type=EST; length=965bp
CCCACGCGTCCGAAAGATTTAGAAACTAGCAGCTAAATTGTAAATTTAAA
GATGCTAGAGAAGCTTTGGGACGATGTTGTGGCAGGGCCTCAGCCTGATC
GTGGCCTTGGCAGGCTGAGGAAAATCACCACAACACCCTTAGCAGTCAAA
GAGGGTGGTGAGGCGGAGTCGTCGTCGGGCAAGTTCCAGAGGTCTCTGTC
AATGCCAGCGAGTCCAGGGGCACCGTCGACGCCAGTGACGCCGACGACGC
CGCTGTCGGCGCGTAAGGACAACGTGTGGAGGAGCGTGTTTCACCCCGGT
AGCAACCTTGCTACTAGGGGTATCGGTGCAGAGGTCTTTGACAAGCCCAC
ACATCCTAACTCTCCCACTGTTTATGACTGGCTTTACAGTGGGGAGACTA
GGAGCAAGCATCTTCACTAGTGGATGATACCCTACCGCGATGTAAATGAA
TGTGATGGGTCACCAACTCACCGGATGAGTTGCCTGTAGTCTGTAGATAG
TGGCGTTTCGTTTTGGAATTCCCAACGTAGACCTTGTCGTTTTTGTTAAT
GCTATTTGTAATTAGTGGTCTTTCCTATCTAAAGTTTTGGTTTTAAAAAT
TGCTGCTGATCAATTAGTAAATTAAAGACAGGTGAGGTTTTCTATATACA
TAAAATTTTACTAAATGGTATGTGGATGCGCCGAAATTGCTCAACTTTTT
TGTCGTAAAATGAATATGGCGTTGGGTTTTTGGGTTTAAAGAAATAGGTT
TTTGAATTGAACTTATTTTTAATAAATCTGATGATTATCCTCTCTCTCCG
GGAAGTGTTACGTTTAGAGACTATTAAAATTGTTTTCAATAATATAAAAT
AATTAGTCATTATCTTATCTCATGATAGACAATATAAATTAAAAGAATAA
AATTATTTATAAAAAATAAGGGGTGATATCCTCGCCTTTTTTATGATGTG
TATGTCTATTATTTG
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