EY679339

Overview
NameEY679339
Unique NameEY679339
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length955
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679339 vs. ExPASy Swiss-Prot
Match: YTHD1_MOUSE (YTH domain family protein 1 OS=Mus musculus GN=Ythdf1 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.444e-23
Identity = 51/88 (57.95%), Postives = 63/88 (71.59%), Query Frame = 2
Query:   35 WQQDKWSGSFPVKWHIIKDVPNTSLRHIILRNNENKPVTNSRDTQEIMHTEGLEMLKIFKNHPRDTSLFDDFMYYEKRQKFMQEERAR 298
            W QDKW G F VKW  +KDVPN  LRHI L NN+NKPVTNSRDTQE+   +  ++LKI  ++   TS+FDDF +YEKRQ+  +EE  R
Sbjct:  465 WSQDKWKGKFDVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQE--EEEVVR 550          
BLAST of EY679339 vs. ExPASy Swiss-Prot
Match: YTHD2_MACFA (YTH domain family protein 2 OS=Macaca fascicularis GN=YTHDF2 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.192e-23
Identity = 48/80 (60.00%), Postives = 60/80 (75.00%), Query Frame = 2
Query:   35 WQQDKWSGSFPVKWHIIKDVPNTSLRHIILRNNENKPVTNSRDTQEIMHTEGLEMLKIFKNHPRDTSLFDDFMYYEKRQK 274
            W QDKW G F V+W  +KDVPN+ LRHI L NNENKPVTNSRDTQE+   +  ++LKI  ++   TS+FDDF +YEKRQ+
Sbjct:  486 WSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQE 565          
BLAST of EY679339 vs. ExPASy Swiss-Prot
Match: YTHD2_HUMAN (YTH domain family protein 2 OS=Homo sapiens GN=YTHDF2 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 3.192e-23
Identity = 48/80 (60.00%), Postives = 60/80 (75.00%), Query Frame = 2
Query:   35 WQQDKWSGSFPVKWHIIKDVPNTSLRHIILRNNENKPVTNSRDTQEIMHTEGLEMLKIFKNHPRDTSLFDDFMYYEKRQK 274
            W QDKW G F V+W  +KDVPN+ LRHI L NNENKPVTNSRDTQE+   +  ++LKI  ++   TS+FDDF +YEKRQ+
Sbjct:  486 WSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQE 565          
BLAST of EY679339 vs. ExPASy Swiss-Prot
Match: YTHD2_BOVIN (YTH domain family protein 2 OS=Bos taurus GN=YTHDF2 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.192e-23
Identity = 48/80 (60.00%), Postives = 60/80 (75.00%), Query Frame = 2
Query:   35 WQQDKWSGSFPVKWHIIKDVPNTSLRHIILRNNENKPVTNSRDTQEIMHTEGLEMLKIFKNHPRDTSLFDDFMYYEKRQK 274
            W QDKW G F V+W  +KDVPN+ LRHI L NNENKPVTNSRDTQE+   +  ++LKI  ++   TS+FDDF +YEKRQ+
Sbjct:  487 WSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQE 566          
BLAST of EY679339 vs. ExPASy Swiss-Prot
Match: YTHD3_PONAB (YTH domain family protein 3 OS=Pongo abelii GN=YTHDF3 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.169e-23
Identity = 52/91 (57.14%), Postives = 62/91 (68.13%), Query Frame = 2
Query:   35 WQQDKWSGSFPVKWHIIKDVPNTSLRHIILRNNENKPVTNSRDTQEIMHTEGLEMLKIFKNHPRDTSLFDDFMYYEKRQ---KFMQEERAR 298
            W QDKW G F VKW  +KDVPN  LRHI L NN+NKPVTNSRDTQE+   +  ++LKI       TS+FDDF +YEKRQ   + M+ ER R
Sbjct:  492 WSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQEEEEAMRRERNR 582          
BLAST of EY679339 vs. ExPASy Swiss-Prot
Match: YTHD3_MOUSE (YTH domain family protein 3 OS=Mus musculus GN=Ythdf3 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 4.169e-23
Identity = 52/91 (57.14%), Postives = 62/91 (68.13%), Query Frame = 2
Query:   35 WQQDKWSGSFPVKWHIIKDVPNTSLRHIILRNNENKPVTNSRDTQEIMHTEGLEMLKIFKNHPRDTSLFDDFMYYEKRQ---KFMQEERAR 298
            W QDKW G F VKW  +KDVPN  LRHI L NN+NKPVTNSRDTQE+   +  ++LKI       TS+FDDF +YEKRQ   + M+ ER R
Sbjct:  492 WSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQEEEEAMRRERNR 582          
BLAST of EY679339 vs. ExPASy Swiss-Prot
Match: YTHD3_HUMAN (YTH domain family protein 3 OS=Homo sapiens GN=YTHDF3 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.169e-23
Identity = 52/91 (57.14%), Postives = 62/91 (68.13%), Query Frame = 2
Query:   35 WQQDKWSGSFPVKWHIIKDVPNTSLRHIILRNNENKPVTNSRDTQEIMHTEGLEMLKIFKNHPRDTSLFDDFMYYEKRQ---KFMQEERAR 298
            W QDKW G F VKW  +KDVPN  LRHI L NN+NKPVTNSRDTQE+   +  ++LKI       TS+FDDF +YEKRQ   + M+ ER R
Sbjct:  492 WSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQEEEEAMRRERNR 582          
BLAST of EY679339 vs. ExPASy Swiss-Prot
Match: YTHD1_HUMAN (YTH domain family protein 1 OS=Homo sapiens GN=YTHDF1 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.445e-23
Identity = 50/88 (56.82%), Postives = 63/88 (71.59%), Query Frame = 2
Query:   35 WQQDKWSGSFPVKWHIIKDVPNTSLRHIILRNNENKPVTNSRDTQEIMHTEGLEMLKIFKNHPRDTSLFDDFMYYEKRQKFMQEERAR 298
            W QDKW G F V+W  +KDVPN  LRHI L NN+NKPVTNSRDTQE+   +  ++LKI  ++   TS+FDDF +YEKRQ+  +EE  R
Sbjct:  465 WSQDKWKGKFDVQWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIISSYKHTTSIFDDFAHYEKRQE--EEEVVR 550          
The following BLAST results are available for this feature:
BLAST of EY679339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
YTHD1_MOUSE2.444e-2357.95YTH domain family protein 1 OS=Mus musculus GN=Yth... [more]
YTHD2_MACFA3.192e-2360.00YTH domain family protein 2 OS=Macaca fascicularis... [more]
YTHD2_HUMAN3.192e-2360.00YTH domain family protein 2 OS=Homo sapiens GN=YTH... [more]
YTHD2_BOVIN3.192e-2360.00YTH domain family protein 2 OS=Bos taurus GN=YTHDF... [more]
YTHD3_PONAB4.169e-2357.14YTH domain family protein 3 OS=Pongo abelii GN=YTH... [more]
YTHD3_MOUSE4.169e-2357.14YTH domain family protein 3 OS=Mus musculus GN=Yth... [more]
YTHD3_HUMAN4.169e-2357.14YTH domain family protein 3 OS=Homo sapiens GN=YTH... [more]
YTHD1_HUMAN5.445e-2356.82YTH domain family protein 1 OS=Homo sapiens GN=YTH... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-059-B02-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679339 ID=EY679339; Name=EY679339; organism=Citrus sinensis; type=EST; length=955bp
TTGGTCCTGTTGACTTTTACATGATATGGATTTTTGGCAGCAAGACAAAT
GGAGTGGGAGCTTCCCTGTGAAGTGGCACATCATCAAAGATGTGCCAAAT
ACCTCCTTAAGGCACATCATATTACGGAACAATGAGAATAAGCCCGTGAC
TAATAGCAGAGATACACAAGAGATAATGCATACAGAAGGCCTGGAGATGC
TGAAGATATTTAAAAATCATCCTCGGGATACTTCGTTATTTGACGACTTT
ATGTATTACGAAAAGCGTCAGAAGTTCATGCAGGAAGAGAGAGCCCGCTT
AGTATTCAAAAGCTTTCAACATCCATTTTTTTCACCGGCATTAGGGCTTG
CAGATAAGTTAAATCGTGTTGTTCAACTACCTTTGAAGGAAGAAGAGAAG
ATTAACACCACGGAGAAAAGTTCTTCAAACTCTGATATCTCTAATTCAAG
TAGTGGGAATGGAAATGCTGATCGAGTTGTAGTTGAAGCAAAAGATGATA
TTAAATCCACTCAACTTTCTCTAAAACCCAAAAGCCAGCTGAGTCCTAAA
CCCTTTGGTGAAGCGACTGACATTTGCAAATTTCTGCAACGGGTAATGGT
CTTACGGGGGGAACAATGGCCAATCAACTCCATGGGAATATCAGAAACTT
TCTATAATTTAAAAAGTTGGGGGAATTTCCTCTTGAATCCTAAGTCCTAT
CACTTGAACTAAGGAAGGGGCTTTCCCAAAAATCCCCTTCCCCAAAATCC
AAATTAAAAAATTTGGGTGCAACTCCCTTTTGATTCCCAAGTCCCAAACC
TTGACAAAAAGGGAGGGCTTTTTCCTAAAAATCCCATCCCACAAAATCAA
GGGGAGGTAAAAGTTTTTTGGTTTTTCACCTTCGAAACCACCTCTTGTCC
CCTCGGGGGACCTGGTTGTGAAATTTCTGCGAAATTCCTCTTTGCCCTGG
TGTTA
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