EY679331

Overview
NameEY679331
Unique NameEY679331
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length963
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679331 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 316.62 bits (810), Expect = 1.330e-85
Identity = 170/244 (69.67%), Postives = 190/244 (77.87%), Query Frame = 2
Query:   65 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMEPVEG*QNCWKGRSVK*TDPL*PGGNF*SIGFGWKNREAFAELKVK--GNPRMEGWLWFSQVWLPPSGPLVPGKGTVRRTWANHLA 784
            F GKAV L+PS +E++  G+++MRKT SK+  VSSGSPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLM  VEG      G   +  DPL PGG+F  +G   ++ EAFAELKVK   N R+  +  F          +V GKG +    A+HLA
Sbjct:   13 FAGKAVKLSPSSSEITGNGKVTMRKTASKAKTVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG-YRVAGGPLGEVVDPLYPGGSFDPLGLA-EDPEAFAELKVKEIKNGRLAMFSMFGFF----VQAIVTGKGPLENL-ADHLA 249          
BLAST of EY679331 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 1.736e-85
Identity = 170/244 (69.67%), Postives = 190/244 (77.87%), Query Frame = 2
Query:   65 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMEPVEG*QNCWKGRSVK*TDPL*PGGNF*SIGFGWKNREAFAELKVK--GNPRMEGWLWFSQVWLPPSGPLVPGKGTVRRTWANHLA 784
            F GKAV L+PS +E++  G+++MRKT SK+  VSSGSPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLM  VEG      G   +  DPL PGG+F  +G   ++ EAFAELKVK   N R+  +  F          +V GKG +    A+HLA
Sbjct:   12 FAGKAVKLSPSSSEVTGNGKVTMRKTASKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG-YRVAGGPLGEVVDPLYPGGSFDPLGLA-EDPEAFAELKVKEIKNGRLAMFSMFGFF----VQAIVTGKGPLENL-ADHLA 248          
BLAST of EY679331 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 314.694 bits (805), Expect = 5.052e-85
Identity = 169/244 (69.26%), Postives = 191/244 (78.28%), Query Frame = 2
Query:   65 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMEPVEG*QNCWKGRSVK*TDPL*PGGNF*SIGFGWKNREAFAELKVK--GNPRMEGWLWFSQVWLPPSGPLVPGKGTVRRTWANHLA 784
            F GKAV L+PS +E++  G+++MRKT +K+  VSSGSPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLM  VEG +   +    +  DPL PGG+F  +G   ++ EAFAELKVK   N R+  +  F          LV GKG +    A+HLA
Sbjct:   12 FAGKAVKLSPSSSEVTGNGKVTMRKTANKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLG-EVVDPLYPGGSFDPLGLA-EDPEAFAELKVKEIKNGRLAMFSMFGFF----VQALVTGKGPLENL-ADHLA 248          
BLAST of EY679331 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 6.599e-85
Identity = 169/244 (69.26%), Postives = 188/244 (77.05%), Query Frame = 2
Query:   65 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMEPVEG*QNCWKGRSVK*TDPL*PGGNF*SIGFGWKNREAFAELKVK--GNPRMEGWLWFSQVWLPPSGPLVPGKGTVRRTWANHLA 784
            F GKAV L+PS +E++  GR++MRKT +K+   SSGSPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLM  VEG      G   +  DPL PGG+F  +G    + EAFAELKVK   N R+  +  F          +V GKG +    A+HLA
Sbjct:   13 FAGKAVKLSPSSSEITGNGRVTMRKTATKAKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG-YRIAGGPLGEVVDPLYPGGSFDPLGLA-DDPEAFAELKVKEIKNGRLAMFSMFGFF----VQAIVTGKGPLENL-ADHLA 249          
BLAST of EY679331 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 6.599e-85
Identity = 167/242 (69.01%), Postives = 187/242 (77.27%), Query Frame = 2
Query:   65 FVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMEPVEG*QNCWKGRSVK*TDPL*PGGNF*SIGFGWKNREAFAELKVK--GNPRMEGWLWFSQVWLPPSGPLVPGKGTVRRTWANHLA 784
            F G+AV L+PS  E++  GR+SMRKT +K V+S SPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQV+LM  VEG      G   +  DPL PGG+F  +G   ++ EAFAELKVK   N R+  +  F          +V GKG +    A+HLA
Sbjct:   13 FAGQAVKLSPSAPEITGNGRVSMRKTVAKPVASSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEG-YRVAGGPLGEVVDPLYPGGSFDPLGLA-EDPEAFAELKVKEIKNGRLAMFSMFGFF----VQAIVTGKGPLENL-ADHLA 247          
BLAST of EY679331 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 8.618e-85
Identity = 168/242 (69.42%), Postives = 186/242 (76.86%), Query Frame = 2
Query:   65 FVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMEPVEG*QNCWKGRSVK*TDPL*PGGNF*SIGFGWKNREAFAELKVK--GNPRMEGWLWFSQVWLPPSGPLVPGKGTVRRTWANHLA 784
            F G+AV L+PS +E+S  GRI+MRK  +KS  S SPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLM  VEG      G   +  DPL PGG+F  +G   ++ EAFAELKVK   N R+  +  F          +V GKG +    A+HLA
Sbjct:   13 FAGQAVKLSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG-YRIAGGPLGEVVDPLYPGGSFDPLGLA-EDPEAFAELKVKEIKNGRLAMFSMFGFF----VQAIVTGKGPLENL-ADHLA 247          
BLAST of EY679331 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 313.153 bits (801), Expect = 1.470e-84
Identity = 168/244 (68.85%), Postives = 190/244 (77.87%), Query Frame = 2
Query:   65 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMEPVEG*QNCWKGRSVK*TDPL*PGGNF*SIGFGWKNREAFAELKVK--GNPRMEGWLWFSQVWLPPSGPLVPGKGTVRRTWANHLA 784
            F GKAV L+PS +E++  G+++MRKT +K+  +SSGSPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLM  VEG      G   +  DPL PGG+F  +G   ++ EAFAELKVK   N R+  +  F          +V GKG +    A+HLA
Sbjct:   13 FAGKAVKLSPSSSEITGNGKVTMRKTVTKAKPLSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG-YRVAGGPLGEVVDPLYPGGSFDPLGLA-EDPEAFAELKVKHIKNGRLAMFSMFGFF----VQAIVTGKGPLENL-ADHLA 249          
BLAST of EY679331 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 311.227 bits (796), Expect = 5.586e-84
Identity = 166/240 (69.17%), Postives = 185/240 (77.08%), Query Frame = 2
Query:   71 GKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMEPVEG*QNCWKGRSVK*TDPL*PGGNF*SIGFGWKNREAFAELKVK--GNPRMEGWLWFSQVWLPPSGPLVPGKGTVRRTWANHLA 784
            G+AV L+P+  E+    + +MRKT SKSVSSGSPWYG DRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLM  VEG      G   + TDP+ PGG+F  +G    + EAFAELKVK   N R+  +  F          +V GKG +    A+HLA
Sbjct:    5 GQAVKLSPNAPEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG-YRIAGGPLGEVTDPIYPGGSFDPLGLA-DDPEAFAELKVKELKNGRLAMFSMFGFF----VQAIVTGKGPLENL-ADHLA 237          
BLAST of EY679331 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 309.686 bits (792), Expect = 1.625e-83
Identity = 157/204 (76.96%), Postives = 171/204 (83.82%), Query Frame = 2
Query:   65 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMEPVEG*QNCWKGRSVK*TDPL*PGGNF*SIGFGWKNREAFAELKVK 670
            F G AV L+PS +E++  G+  MRKT +K+  VSSGSPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLM  +EG      G   + TDPL PGG+F  +G    + EAFAELKVK
Sbjct:   13 FAGNAVKLSPSSSEITGNGKAIMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEG-YRVAGGPLGEVTDPLYPGGSFDPLGLA-DDPEAFAELKVK 214          
BLAST of EY679331 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 3.621e-83
Identity = 165/244 (67.62%), Postives = 189/244 (77.46%), Query Frame = 2
Query:   65 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMEPVEG*QNCWKGRSVK*TDPL*PGGNF*SIGFGWKNREAFAELKVK--GNPRMEGWLWFSQVWLPPSGPLVPGKGTVRRTWANHLA 784
            F GKAV L+PS +E++  G+++MRKT SK+  VSS SPWYG +RVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFK G+QIFS+GGLDYLGNPSL+HAQSILAIWACQVVLM  VEG +   +    +  DPL PGG+F  +G   ++ EAFAELKVK   N R+  +  F          +V GKG +    A+HLA
Sbjct:   13 FAGKAVKLSPSSSEITGNGKVTMRKTASKAKPVSSSSPWYGPNRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLG-EVVDPLYPGGSFDPLGLA-EDPEAFAELKVKEIKNGRLAMFSMFGFF----VQAIVTGKGPLENL-ADHLA 249          
The following BLAST results are available for this feature:
BLAST of EY679331 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CB24_TOBAC1.330e-8569.67Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB21_TOBAC1.736e-8569.67Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB25_NICPL5.052e-8569.26Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB2G_SOLLC6.599e-8569.26Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB22_TOBAC6.599e-8569.01Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB2B_SOLLC8.618e-8569.42Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB25_TOBAC1.470e-8468.85Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB21_CUCSA5.586e-8469.17Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB27_TOBAC1.625e-8376.96Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB23_NICPL3.621e-8367.62Chlorophyll a-b binding protein C, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-059-A06-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679331 ID=EY679331; Name=EY679331; organism=Citrus sinensis; type=EST; length=963bp
CCACGCGTCCGCTTCTCAATTAAATTCCTCAATGGCAACCTCAACAATGG
CTCTCTCCTCATCATTCGTCGGCAAGGCCGTGAACCTCGCCCCTTCAGGC
AATGAGCTAAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCAA
GTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCTAGACAGAGTCAAGTACT
TGGGCCCATTCTCTGGCGAGCCCCCAAGCTACTTGACCGGTGAGTTCCCT
GGCGACTACGGTTGGGACACAGCCGGGCTTTCAGCTGACCCAGAAACCTT
TGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTGG
GAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAG
TTCGGTGAGGCCGTATGGTTCAAGGCGGGGGCCCAGATCTTCAGCGAGGG
CGGGCTTGACTACTTGGGGAACCCAAGCCTGATCCACGCCCAGAGCATCT
TGGCCATCTGGGCTTGCCAGGTGGTCTTGATGGAACCCGTTGAGGGTTAA
CAGAATTGCTGGAAGGGCCGCTCGGTAAAGTGAACTGACCCATTGTAACC
AGGTGGCAACTTTTGATCCATTGGGTTTGGGTGGAAGAACCGGGAAGCTT
TTGCTGAACTCAAGGTTAAAGGAAATCCAAGAATGGAAGGGTGGCTATGG
TTCTCCCAGGTTTGGTTACCTCCTTCCGGGCCTTTGGTACCCGGAAAGGG
AACCGTTAGAAGAACTTGGGCCAACCATTTGGCCAAAAACTGTTCAAAAA
AATATGACTGGGACAATACACCAACAAAATTTTTTCCCCGAAAAATAAGG
ACCTATTGTTGGAAAGAACTTTAATAAAGCGAGAAAAAATTGGAATAATC
AATAAAGGTATTGGGTAATAGTGGGGGATGCAACCAATATTTTTTCATTT
TATAAACAACAAC
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