EY679287

Overview
NameEY679287
Unique NameEY679287
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1040
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679287 vs. ExPASy Swiss-Prot
Match: TM9S4_RAT (Transmembrane 9 superfamily member 4 OS=Rattus norvegicus GN=Tm9sf4 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.160e-21
Identity = 52/130 (40.00%), Postives = 72/130 (55.38%), Query Frame = 1
Query:   79 VLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXXTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVA--IMFGNRHHWLPYVF 462
            +L AG LPFG +FIELFFI S+IW  +FYY+FGF                    Y  LC ED+RWWW+ F  SG  A YV +Y+I Y V  L  +   + +LLY GY+ +M ++  ++ G    +  Y+F
Sbjct:  504 ILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEF-IPSLLYFGYTTLMVLSFWLLTGTIGFYAAYMF 632          
BLAST of EY679287 vs. ExPASy Swiss-Prot
Match: TM9S4_PONAB (Transmembrane 9 superfamily member 4 OS=Pongo abelii GN=TM9SF4 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.160e-21
Identity = 52/130 (40.00%), Postives = 72/130 (55.38%), Query Frame = 1
Query:   79 VLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXXTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVA--IMFGNRHHWLPYVF 462
            +L AG LPFG +FIELFFI S+IW  +FYY+FGF                    Y  LC ED+RWWW+ F  SG  A YV +Y+I Y V  L  +   + +LLY GY+ +M ++  ++ G    +  Y+F
Sbjct:  503 ILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEF-IPSLLYFGYTALMVLSFWLLTGTIGFYAAYMF 631          
BLAST of EY679287 vs. ExPASy Swiss-Prot
Match: TM9S4_MOUSE (Transmembrane 9 superfamily member 4 OS=Mus musculus GN=Tm9sf4 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.160e-21
Identity = 52/130 (40.00%), Postives = 72/130 (55.38%), Query Frame = 1
Query:   79 VLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXXTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVA--IMFGNRHHWLPYVF 462
            +L AG LPFG +FIELFFI S+IW  +FYY+FGF                    Y  LC ED+RWWW+ F  SG  A YV +Y+I Y V  L  +   + +LLY GY+ +M ++  ++ G    +  Y+F
Sbjct:  504 ILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEF-IPSLLYFGYTTLMVLSFWLLTGTIGFYAAYMF 632          
BLAST of EY679287 vs. ExPASy Swiss-Prot
Match: TM9S4_HUMAN (Transmembrane 9 superfamily member 4 OS=Homo sapiens GN=TM9SF4 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 1.160e-21
Identity = 52/130 (40.00%), Postives = 72/130 (55.38%), Query Frame = 1
Query:   79 VLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXXTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVA--IMFGNRHHWLPYVF 462
            +L AG LPFG +FIELFFI S+IW  +FYY+FGF                    Y  LC ED+RWWW+ F  SG  A YV +Y+I Y V  L  +   + +LLY GY+ +M ++  ++ G    +  Y+F
Sbjct:  503 ILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEF-IPSLLYFGYTALMVLSFWLLTGTIGFYAAYMF 631          
BLAST of EY679287 vs. ExPASy Swiss-Prot
Match: TM9S4_BOVIN (Transmembrane 9 superfamily member 4 OS=Bos taurus GN=TM9SF4 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 1.160e-21
Identity = 52/130 (40.00%), Postives = 72/130 (55.38%), Query Frame = 1
Query:   79 VLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXXTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVA--IMFGNRHHWLPYVF 462
            +L AG LPFG +FIELFFI S+IW  +FYY+FGF                    Y  LC ED+RWWW+ F  SG  A YV +Y+I Y V  L  +   + +LLY GY+ +M ++  ++ G    +  Y+F
Sbjct:  503 ILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEF-IPSLLYFGYTALMVLSFWLLTGTIGFYAAYMF 631          
BLAST of EY679287 vs. ExPASy Swiss-Prot
Match: TM9S2_MOUSE (Transmembrane 9 superfamily member 2 OS=Mus musculus GN=Tm9sf2 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 7.518e-21
Identity = 46/113 (40.71%), Postives = 66/113 (58.41%), Query Frame = 1
Query:   79 VLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXXTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAV 417
            ++  G LPFG +FI+LFFIL+SIW  + YY+FGF                    Y HLC ED+ W W++F  SG  A+Y  +Y+I+Y    LQ ++G  S +LY GY++IM +
Sbjct:  523 IIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAIHYFFSKLQ-ITGTASTILYFGYTMIMVL 634          
BLAST of EY679287 vs. ExPASy Swiss-Prot
Match: TM9S2_RAT (Transmembrane 9 superfamily member 2 OS=Rattus norvegicus GN=Tm9sf2 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 9.819e-21
Identity = 46/113 (40.71%), Postives = 66/113 (58.41%), Query Frame = 1
Query:   79 VLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXXTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAV 417
            ++  G LPFG +FI+LFFIL+SIW  + YY+FGF                    Y HLC ED+ W W++F  SG  A+Y  +Y+I+Y    LQ ++G  S +LY GY++IM +
Sbjct:  524 IIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLVYAIHYFFSKLQ-ITGTASTILYFGYTMIMVL 635          
BLAST of EY679287 vs. ExPASy Swiss-Prot
Match: TM9S2_PONAB (Transmembrane 9 superfamily member 2 OS=Pongo abelii GN=TM9SF2 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 9.819e-21
Identity = 45/113 (39.82%), Postives = 66/113 (58.41%), Query Frame = 1
Query:   79 VLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXXTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAV 417
            ++  G LPFG +FI+LFFIL+SIW  + YY+FGF                    Y HLC ED+ W W++F  SG  A+Y  +Y+++Y    LQ ++G  S +LY GY++IM +
Sbjct:  524 IIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAVHYFFSKLQ-ITGTASTILYFGYTMIMVL 635          
BLAST of EY679287 vs. ExPASy Swiss-Prot
Match: TM9S2_HUMAN (Transmembrane 9 superfamily member 2 OS=Homo sapiens GN=TM9SF2 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 9.819e-21
Identity = 45/113 (39.82%), Postives = 66/113 (58.41%), Query Frame = 1
Query:   79 VLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXXTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAV 417
            ++  G LPFG +FI+LFFIL+SIW  + YY+FGF                    Y HLC ED+ W W++F  SG  A+Y  +Y+++Y    LQ ++G  S +LY GY++IM +
Sbjct:  524 IIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAVHYFFSKLQ-ITGTASTILYFGYTMIMVL 635          
BLAST of EY679287 vs. ExPASy Swiss-Prot
Match: PHG1A_DICDI (Putative phagocytic receptor 1a OS=Dictyostelium discoideum GN=phg1a PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.187e-20
Identity = 47/117 (40.17%), Postives = 69/117 (58.97%), Query Frame = 1
Query:   70 WLLVLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXXTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVA 420
            +L +L  G LPFG +FIEL FIL+S+W  +FYY+FGF                    Y  LC ED  WWW++F  +GS +LY+F+YS+++  F    ++  +S+LL   YS IM++A
Sbjct:  500 YLSILMGGILPFGAVFIELHFILTSLWDNQFYYIFGFLFIVLMILIVTSAEISIVMCYFQLCAEDHHWWWRSFLTAGSSSLYMFIYSVSF--FRYLGITKFISSLLDFSYSFIMSLA 614          
The following BLAST results are available for this feature:
BLAST of EY679287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
TM9S4_RAT1.160e-2140.00Transmembrane 9 superfamily member 4 OS=Rattus nor... [more]
TM9S4_PONAB1.160e-2140.00Transmembrane 9 superfamily member 4 OS=Pongo abel... [more]
TM9S4_MOUSE1.160e-2140.00Transmembrane 9 superfamily member 4 OS=Mus muscul... [more]
TM9S4_HUMAN1.160e-2140.00Transmembrane 9 superfamily member 4 OS=Homo sapie... [more]
TM9S4_BOVIN1.160e-2140.00Transmembrane 9 superfamily member 4 OS=Bos taurus... [more]
TM9S2_MOUSE7.518e-2140.71Transmembrane 9 superfamily member 2 OS=Mus muscul... [more]
TM9S2_RAT9.819e-2140.71Transmembrane 9 superfamily member 2 OS=Rattus nor... [more]
TM9S2_PONAB9.819e-2139.82Transmembrane 9 superfamily member 2 OS=Pongo abel... [more]
TM9S2_HUMAN9.819e-2139.82Transmembrane 9 superfamily member 2 OS=Homo sapie... [more]
PHG1A_DICDI2.187e-2040.17Putative phagocytic receptor 1a OS=Dictyostelium d... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-058-E08-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679287 ID=EY679287; Name=EY679287; organism=Citrus sinensis; type=EST; length=1040bp
GGCCGGCGGTTCCGGTCGGAATTCCGGGTCGACCCCGCGTCCGGAAATTC
CTGCTCGCAATATCCATCATGGCTTCTTGTGCTTGGTGCAGGAACCCTTC
CGTTTGGAACCCTCTTTATAGAACTTTTCTTCATTCTTTCTAGCATTTGG
CTGGGAAGGTTCTATTATGTCTTTGGTTTTCTGCTGATAGTTCTTTTGTT
GCTGGTTGTTGTTTGCGCTGAAGTGTCTGTGGTCCTAACATACATGCATC
TTTGTGTGGAGGATTGGCGTTGGTGGTGGAAGGCTTTCTTTGCTTCAGGA
TCAGTTGCACTGTATGTGTTCCTGTACTCTATCAACTATTTGGTATTTGA
CCTGCAGAGTTTGAGTGGACCCGTCTCTGCTCTACTATATCTTGGTTATT
CATTAATCATGGCAGTCGCAATCATGTTTGGCAACCGGCACCATTGGCTT
CCTTACGTCTTTTTTACTTCGTCCATTACCTTTTCTCGTCTGTAAAGATT
GACTGAAAAATTGTGTTTGTGAATCAATCTTCATCGACCAGGTAAAGAAA
AATCCAATACCTAGGAAGAGGGAGTTTTTCTTGGTTTCAGCCTTCCTTTT
AGAAAAATTTAAAAAATTATGATATGGCCGGTCTCTTCCCCCAATATTGG
TTGTCCTGGTTTTTCCAAATTTTACTAAATTTAGAACATTCTTTTTTGAT
TTACCTCTTCTAAATTTCATTGGACTGGTCCAACCAAAATTGGTAATTTG
ATAGGTTTTGGTCCCCCATGGTATCTTACTTTAACTTTATCCATTGGATA
AAAAATTATATTAGATCTTTTTTCTCTTTAATAAAAAAAAAAAAAAAAAA
AAAAAGAGGGGGAGGCCGCCCCTTAAGAGATACCCCAGATTAAATCCACC
GCCGTTGGCTATGCCAATATCCATATAACCTTCTTCCTGAAGGGAGGCGT
CACTGAACATCCTATTACTTACTTTCGGTGGCGTCACTTTGTTTTAATAA
CAAACCCCTGACGGGGGAGTGGGGTGGTAAAAAATACCAC
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