EY679286

Overview
NameEY679286
Unique NameEY679286
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length942
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY679286 vs. ExPASy Swiss-Prot
Match: ACCR4_ARATH (Serine/threonine-protein kinase-like protein CCR4 OS=Arabidopsis thaliana GN=CCR4 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.036e-18
Identity = 56/117 (47.86%), Postives = 72/117 (61.54%), Query Frame = 2 
Query:  197 TFSISETGNQSLVCALIPSS--RPGDFSLNCSIPQLIPVN-PNASFASIVSGDGFLCTLITFSASSSSVMHCWRFSADGIINDYKRIYRGPALQQLEAGNSHICGLVNGTNDLHWWQ 538
            T SIS   NQ+LVCAL   S  +   F LN SIP  +  N  N  F+ +VSG+GF+C LI+   S++S + CWRFS DG    +KRIY GP L++LEAGN  ICG+   +  L  WQ
Sbjct:   34 TVSISHISNQTLVCALNNHSYLQCSSFPLN-SIPFSLTGNLRNRRFSGVVSGNGFVCGLISRLDSNTSTLLCWRFSVDGTNMLHKRIYHGPELEELEAGNFRICGVERVSRRLRCWQ 149
The following BLAST results are available for this feature:
BLAST of EY679286 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ACCR4_ARATH1.036e-1847.86Serine/threonine-protein kinase-like protein CCR4 ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-058-E07-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679286 ID=EY679286; Name=EY679286; organism=Citrus sinensis; type=EST; length=942bp
TCTCTTTACAAATTCATCACCAAAAACTTCACCTCCCAAACTCTTTTTTG
TCTCATCATGAAATTAACAAAACATTCAATAATATTAATCCTCCTCCATT
ACAGCCATGTTTAACGAGCCCAACAACCCTTTTTTGCTAACTACACTATT
ATTATTATTCTTTGTCTCTTTAGTTCCCTTCAATTCTTCGCTCTCGACTT
TCTCAATATCCGAAACTGGAAACCAGTCTTTAGTTTGCGCGTTGATACCT
TCTTCCCGGCCGGGAGATTTTTCTCTCAACTGTTCAATTCCTCAGCTTAT
TCCTGTGAATCCCAATGCTTCATTTGCAAGTATTGTATCCGGAGATGGAT
TCTTGTGCACGTTAATAACATTTTCAGCTTCGTCATCTTCAGTTATGCAT
TGCTGGAGATTCTCTGCTGATGGTATTATCAATGACTATAAAAGAATATA
TCGGGGCCCTGCTTTGCAACAACTTGAGGCTGGAAACTCTCACATTTGTG
GCCTTGTTAATGGGACCAATGATCTCCATTGGTGGCAATGGGCTGATTTC
AACTCAACTTCCATTCATAACTTCTCTAATAATCGCTGTCGGTGAAATTT
TTGTTTGCGGGGTGGTTAAAAAAGGCACAATCACTTGCTTCCGAATCAAA
AAATAGCCCCAACCACCGTCCCTCAAAAATTTCCAAGGGGGAATTTTCAA
AAGGGAACCCCTGGGTTTTCGGATGGTTGGGCCATAAAAAAAATCAAAAA
TGCCCTTGTGGGGGGAATCCGGGGGGAAAATGGCCCCAAAGGAAATTCTA
AAATTTTGCCCTTTGGAAAAAAACCTAAATGGGGCCCTGAAAAAAAAAAA
AAAAAAATTTTTTTGTTGGGGGGGCAAAAAGGGTTTTTCTTTTTTCCAAA
AAATTTTTTTTGGGGAAAAAAAACTTTTTTTTTTAATATTAT
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