EY679282

Overview
NameEY679282
Unique NameEY679282
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length998
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679282 vs. ExPASy Swiss-Prot
Match: UBC18_ARATH (Probable ubiquitin carrier protein E2 18 OS=Arabidopsis thaliana GN=UBC18 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 9.063e-59
Identity = 80/97 (82.47%), Postives = 91/97 (93.81%), Query Frame = 2
Query:  176 MSGSSTTTRKALSKIACNRLQKELAEWQVNPPSGFKHKATDNLQRWVIEVNGAPGTLYANETYQLQVEFPEHYPMEAPQVIFLHPSPLHPHVYSNGH 466
            M+ SS+ +RKALSKIACNRLQKEL+EWQVNPP+GFKH+ TDNLQ+WVIEV GAPGTLYANETY LQVEFP+HYPMEAPQVIF+ P+PLHPH+YSNGH
Sbjct:    1 MTSSSSPSRKALSKIACNRLQKELSEWQVNPPTGFKHRVTDNLQKWVIEVTGAPGTLYANETYNLQVEFPQHYPMEAPQVIFVPPAPLHPHIYSNGH 97          

HSP 2 Score: 66.6254 bits (161), Expect = 9.063e-59
Identity = 27/31 (87.10%), Postives = 29/31 (93.55%), Query Frame = 1
Query:  478 QRPEDNDRYVKNCRNGRTPKETRGWFHDDKV 570
            QRP DNDRYVKNC+NGR+PKETR WFHDDKV
Sbjct:  131 QRPTDNDRYVKNCKNGRSPKETRWWFHDDKV 161          
BLAST of EY679282 vs. ExPASy Swiss-Prot
Match: UBC16_ARATH (Probable ubiquitin carrier protein E2 16 OS=Arabidopsis thaliana GN=UBC16 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 4.452e-58
Identity = 79/97 (81.44%), Postives = 88/97 (90.72%), Query Frame = 2
Query:  176 MSGSSTTTRKALSKIACNRLQKELAEWQVNPPSGFKHKATDNLQRWVIEVNGAPGTLYANETYQLQVEFPEHYPMEAPQVIFLHPSPLHPHVYSNGH 466
            MS S   +RK LSKIA NRLQKEL EWQ+NPP+GFKHK TDNLQRW+IEV GAPGTLYAN+TYQLQV+FPEHYPME+PQVIFLHP+PLHPH+YSNGH
Sbjct:    1 MSSSGAPSRKTLSKIATNRLQKELVEWQMNPPTGFKHKVTDNLQRWIIEVIGAPGTLYANDTYQLQVDFPEHYPMESPQVIFLHPAPLHPHIYSNGH 97          

HSP 2 Score: 66.6254 bits (161), Expect = 4.452e-58
Identity = 27/31 (87.10%), Postives = 29/31 (93.55%), Query Frame = 1
Query:  478 QRPEDNDRYVKNCRNGRTPKETRGWFHDDKV 570
            QRP DNDRYVKNC+NGR+PKETR WFHDDKV
Sbjct:  131 QRPTDNDRYVKNCKNGRSPKETRWWFHDDKV 161          
BLAST of EY679282 vs. ExPASy Swiss-Prot
Match: UBC15_ARATH (Ubiquitin-conjugating enzyme 15 OS=Arabidopsis thaliana GN=UBC15 PE=2 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 9.867e-58
Identity = 77/97 (79.38%), Postives = 89/97 (91.75%), Query Frame = 2
Query:  176 MSGSSTTTRKALSKIACNRLQKELAEWQVNPPSGFKHKATDNLQRWVIEVNGAPGTLYANETYQLQVEFPEHYPMEAPQVIFLHPSPLHPHVYSNGH 466
            M+ SS  +RKALSKIACNRLQKEL+EWQ+NPP+GF+HK TDNLQ+W I+V GAPGTLYANETYQLQVEFPEHYPMEAPQV+F+ P+P HPH+YSNGH
Sbjct:    1 MTSSSAPSRKALSKIACNRLQKELSEWQLNPPTGFRHKVTDNLQKWTIDVTGAPGTLYANETYQLQVEFPEHYPMEAPQVVFVSPAPSHPHIYSNGH 97          

HSP 2 Score: 66.6254 bits (161), Expect = 9.867e-58
Identity = 27/31 (87.10%), Postives = 29/31 (93.55%), Query Frame = 1
Query:  478 QRPEDNDRYVKNCRNGRTPKETRGWFHDDKV 570
            QRP DNDRYVKNC+NGR+PKETR WFHDDKV
Sbjct:  131 QRPADNDRYVKNCKNGRSPKETRWWFHDDKV 161          
BLAST of EY679282 vs. ExPASy Swiss-Prot
Match: UBC17_ARATH (Probable ubiquitin carrier protein E2 17 OS=Arabidopsis thaliana GN=UBC17 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 2.160e-54
Identity = 78/97 (80.41%), Postives = 87/97 (89.69%), Query Frame = 2
Query:  176 MSGSSTTTRKALSKIACNRLQKELAEWQVNPPSGFKHKATDNLQRWVIEVNGAPGTLYANETYQLQVEFPEHYPMEAPQVIFLHPSPLHPHVYSNGH 466
            M+ SS +TRK L+KIA NRLQKE  EWQ NPPSGFKH+ +DNLQRW+IEV+G PGTLYANETYQLQVEFPEHYPMEAPQVIF HP+PLHPH+YSNGH
Sbjct:    1 MTSSSESTRKGLTKIATNRLQKEFMEWQTNPPSGFKHRVSDNLQRWIIEVHGVPGTLYANETYQLQVEFPEHYPMEAPQVIFQHPAPLHPHIYSNGH 97          

HSP 2 Score: 55.8398 bits (133), Expect = 2.160e-54
Identity = 22/31 (70.97%), Postives = 28/31 (90.32%), Query Frame = 1
Query:  478 QRPEDNDRYVKNCRNGRTPKETRGWFHDDKV 570
            Q+P+DND Y+KNC++GR+PKETR  FHDDKV
Sbjct:  131 QKPKDNDHYLKNCKHGRSPKETRWRFHDDKV 161          
BLAST of EY679282 vs. ExPASy Swiss-Prot
Match: UBE2W_DICDI (Probable ubiquitin-conjugating enzyme E2 W OS=Dictyostelium discoideum GN=ube2w PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.263e-22
Identity = 40/83 (48.19%), Postives = 56/83 (67.47%), Query Frame = 2
Query:  230 RLQKELAEWQVNPPSGFKHKATDNLQRWVIEVNGAPGTLYANETYQLQVEFPEHYPMEAPQVIFLHPSPLHPHVYSNGHNLLS 478
            RLQKEL + + NPP        DNL +WVI V+G  G++Y  E ++LQ +F   YP+++P+VIF+   P+HPH+YSNGH  LS
Sbjct:    8 RLQKELLDLKTNPPPCISITEGDNLDKWVIAVDGTEGSIYQGEHFKLQFKFSSGYPLDSPEVIFIGTPPIHPHIYSNGHICLS 90          

HSP 2 Score: 32.7278 bits (73), Expect = 5.263e-22
Identity = 15/30 (50.00%), Postives = 19/30 (63.33%), Query Frame = 1
Query:  481 RPEDNDRYVKNCRNGRTPKETRGWFHDDKV 570
            RP D+ +YV    N ++PKE R  FHDD V
Sbjct:  121 RPTDDSKYVSRVLN-KSPKEVRWMFHDDTV 149          
BLAST of EY679282 vs. ExPASy Swiss-Prot
Match: UBE2W_MOUSE (Probable ubiquitin-conjugating enzyme E2 W OS=Mus musculus GN=Ube2w PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.321e-21
Identity = 40/87 (45.98%), Postives = 57/87 (65.52%), Query Frame = 2
Query:  230 RLQKELAEWQVNPPSGF---KHKATDNLQRWVIEVNGAPGTLYANETYQLQVEFPEHYPMEAPQVIFLHPS-PLHPHVYSNGHNLLS 478
            RLQKEL   Q +PP G    +    +++ +W++++ GAPGTLY  E +QL  +F   YP ++PQV+F   + P+HPHVYSNGH  LS
Sbjct:    7 RLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPIHPHVYSNGHICLS 93          

HSP 2 Score: 36.965 bits (84), Expect = 4.321e-21
Identity = 14/29 (48.28%), Postives = 20/29 (68.97%), Query Frame = 1
Query:  478 QRPEDNDRYVKNCRNGRTPKETRGWFHDD 564
            +RP DN  YV+ C   + PK+T+ W+HDD
Sbjct:  123 RRPPDNSFYVRTCN--KNPKKTKWWYHDD 149          
BLAST of EY679282 vs. ExPASy Swiss-Prot
Match: UBE2W_HUMAN (Probable ubiquitin-conjugating enzyme E2 W OS=Homo sapiens GN=UBE2W PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.622e-21
Identity = 40/87 (45.98%), Postives = 57/87 (65.52%), Query Frame = 2
Query:  230 RLQKELAEWQVNPPSGF---KHKATDNLQRWVIEVNGAPGTLYANETYQLQVEFPEHYPMEAPQVIFLHPS-PLHPHVYSNGHNLLS 478
            RLQKEL   Q +PP G    +    +++ +W++++ GAPGTLY  E +QL  +F   YP ++PQV+F   + P+HPHVYSNGH  LS
Sbjct:    7 RLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLS 93          

HSP 2 Score: 36.965 bits (84), Expect = 5.622e-21
Identity = 14/29 (48.28%), Postives = 20/29 (68.97%), Query Frame = 1
Query:  478 QRPEDNDRYVKNCRNGRTPKETRGWFHDD 564
            +RP DN  YV+ C   + PK+T+ W+HDD
Sbjct:  123 RRPPDNSFYVRTCN--KNPKKTKWWYHDD 149          
BLAST of EY679282 vs. ExPASy Swiss-Prot
Match: UBE2W_DANRE (Probable ubiquitin-conjugating enzyme E2 W OS=Danio rerio GN=ube2w PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 3.545e-20
Identity = 40/87 (45.98%), Postives = 54/87 (62.07%), Query Frame = 2
Query:  230 RLQKELAEWQVNPPSGF---KHKATDNLQRWVIEVNGAPGTLYANETYQLQVEFPEHYPMEAPQVIFLHPS-PLHPHVYSNGHNLLS 478
            RLQKEL   Q +PP+G    +    + +  W I++ GA GT+Y  E +QL  +F   YP E+PQV+F   + P+HPHVYSNGH  LS
Sbjct:    7 RLQKELLALQNDPPAGMTLNERSVQNTITEWFIDMEGAQGTVYEGEKFQLLFKFSSRYPFESPQVMFTGENIPVHPHVYSNGHICLS 93          

HSP 2 Score: 38.1206 bits (87), Expect = 3.545e-20
Identity = 15/29 (51.72%), Postives = 20/29 (68.97%), Query Frame = 1
Query:  478 QRPEDNDRYVKNCRNGRTPKETRGWFHDD 564
            +RP DN  YVK C   + PK+T+ W+HDD
Sbjct:  123 RRPPDNSFYVKTCN--KNPKKTKWWYHDD 149          
The following BLAST results are available for this feature:
BLAST of EY679282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
UBC18_ARATH9.063e-5982.47Probable ubiquitin carrier protein E2 18 OS=Arabid... [more]
UBC16_ARATH4.452e-5881.44Probable ubiquitin carrier protein E2 16 OS=Arabid... [more]
UBC15_ARATH9.867e-5879.38Ubiquitin-conjugating enzyme 15 OS=Arabidopsis tha... [more]
UBC17_ARATH2.160e-5480.41Probable ubiquitin carrier protein E2 17 OS=Arabid... [more]
UBE2W_DICDI5.263e-2248.19Probable ubiquitin-conjugating enzyme E2 W OS=Dict... [more]
UBE2W_MOUSE4.321e-2145.98Probable ubiquitin-conjugating enzyme E2 W OS=Mus ... [more]
UBE2W_HUMAN5.622e-2145.98Probable ubiquitin-conjugating enzyme E2 W OS=Homo... [more]
UBE2W_DANRE3.545e-2045.98Probable ubiquitin-conjugating enzyme E2 W OS=Dani... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-058-E03-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679282 ID=EY679282; Name=EY679282; organism=Citrus sinensis; type=EST; length=998bp
CATGAGGCATTAGAGTGAGCCGCGGATTGGGAGTTTTGTTTGTCGTTTTT
TCTCTTTCGTCTTCGTCAAACCCGAACCCGAACCCGAACCCATTGATTTC
AATTCAGCAAAACTAAAACCTTTATCTATCATTCATCTCTGCTCGAATAT
CGATTTTCAATCTCGAGAAACAAGCATGTCTGGCTCATCCACCACCACTC
GCAAGGCTCTGAGTAAGATTGCTTGCAATCGCCTTCAGAAAGAGCTTGCG
GAGTGGCAGGTCAACCCACCTTCTGGTTTCAAACATAAGGCCACCGATAA
TCTCCAAAGGTGGGTTATTGAAGTAAATGGAGCTCCAGGGACCCTCTACG
CTAATGAAACCTACCAACTTCAGGTTGAGTTTCCCGAACATTACCCCATG
GAGGCCCCTCAGGTCATTTTTCTTCATCCCTCTCCTCTTCATCCTCACGT
TTACAGCAATGGTCATAATTTGCTTAGCAACGTCCTGAAGATAACGACCG
CTATGTGAAGAACTGCAGAAATGGCCGAACTCCTAAGGAGACAAGGGGGT
GGTTCCATGATGATAAAGTGGTAATAAGCAAATTATCCTCCCTCCATCAA
ATCCAGTTTTAAAATAAATAAAGGTAGGGGGGCTTTCCTATTTTTAAAGG
AAAAAGAAAGCAAAAAAAAGAAAAAGAATAAAAAAAAACATTCTGGTAAA
TGGGTTTTTTTGGGCCTCTTTGGTTAAAATAACACCCGGGGAAAGGGGAG
TGGCCCGGGATATTCAATCCGCAGAAAAAGTAATCTTTTATGTGTTTTTA
ACCGGGGGTGAGAAGGAATTCAAATCTATCCCCCAGGGCTTTTAGGGGGT
AAACCGCGACAGGAGAGGAAAGGGGTTCTGGGGACACTGTAGGGGGAAAA
ATGGAAAATTGTGAAATCCTCGTCTGGGGGTAAGATATATTAACCCTAAA
AAAAACCGCTACGGTATGATACGTGATGAAGCCACGCCTGAAATAAAT
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