EY679277

Overview
NameEY679277
Unique NameEY679277
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length467
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679277 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 2.781e-77
Identity = 138/149 (92.62%), Postives = 143/149 (95.97%), Query Frame = 1
Query:    1 TGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDARAGRMGGTTQYTVNNHMV 447
            +GTHYAVMSSYDYISQGLR YNLDN +DG YIAPAFMDKLVVHITKNF+SLPNIK+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL INDLDA AGRMGGTTQYTVNN MV
Sbjct:  102 SGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 250          
BLAST of EY679277 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 2.781e-77
Identity = 138/149 (92.62%), Postives = 143/149 (95.97%), Query Frame = 1
Query:    1 TGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDARAGRMGGTTQYTVNNHMV 447
            +GTHYAVMSSYDYISQGLR YNLDN +DG YIAPAFMDKLVVHITKNF+SLPNIK+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL INDLDA AGRMGGTTQYTVNN MV
Sbjct:  102 SGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 250          
BLAST of EY679277 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 279.256 bits (713), Expect = 5.799e-75
Identity = 133/149 (89.26%), Postives = 142/149 (95.30%), Query Frame = 1
Query:    1 TGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDARAGRMGGTTQYTVNNHMV 447
            TGTH+AV+SSY+Y+SQGLR YNLDN +DG YIAPAFMDKLVVHITKNF++LPNIKVPLILGIWGGKGQGKSFQCELV AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I+KGKMCCL INDLDA AGRMGGTTQYTVNN MV
Sbjct:  102 TGTHHAVLSSYEYVSQGLRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELVMAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 250          
BLAST of EY679277 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 276.559 bits (706), Expect = 3.759e-74
Identity = 133/148 (89.86%), Postives = 141/148 (95.27%), Query Frame = 1
Query:    4 GTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDARAGRMGGTTQYTVNNHMV 447
            GTH AV+SSY+Y+SQGLRTY+ DNT+ G YIAPAFMDKLVVHI+KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL INDLDA AGRMGGTTQYTVNN MV
Sbjct:   94 GTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 241          
BLAST of EY679277 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 3.759e-74
Identity = 132/149 (88.59%), Postives = 139/149 (93.29%), Query Frame = 1
Query:    1 TGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDARAGRMGGTTQYTVNNHMV 447
            TGTH+AV+ SY+Y+SQGLR YNLDN +DG YIAPAFMDKLVVHITKNF+ LPNIKVPLILGIWGGKGQGKSFQCELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+IIRKG MCCL INDLDA AGRMGGTTQYTVNN MV
Sbjct:  106 TGTHHAVLQSYEYVSQGLRQYNLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMV 254          
BLAST of EY679277 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 1.094e-73
Identity = 129/149 (86.58%), Postives = 140/149 (93.96%), Query Frame = 1
Query:    1 TGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDARAGRMGGTTQYTVNNHMV 447
            TGTH+AV+ SY+Y+SQGLR YN+DNT+DG YIAP+FMDKLVVHITKNF+ LPNIKVPLILG+WGGKGQGKSFQCELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+IIRKG +CCL INDLDA AGRMGGTTQYTVNN MV
Sbjct:  106 TGTHHAVLQSYEYVSQGLRQYNMDNTLDGFYIAPSFMDKLVVHITKNFLKLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNICCLFINDLDAGAGRMGGTTQYTVNNQMV 254          
BLAST of EY679277 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 1.866e-73
Identity = 129/149 (86.58%), Postives = 140/149 (93.96%), Query Frame = 1
Query:    1 TGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDARAGRMGGTTQYTVNNHMV 447
            TGTH+A+M+SY+Y+SQ L+TY LDN +DG YIAPAFMDKLVVHITKNF++LPNIKVPLILG+WGGKGQGKSFQCELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+IIRKG MCCL INDLDA AGRMGGTTQYTVNN MV
Sbjct:  101 TGTHHAIMNSYEYVSQALKTYQLDNKLDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMV 249          
BLAST of EY679277 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 7.089e-73
Identity = 129/148 (87.16%), Postives = 140/148 (94.59%), Query Frame = 1
Query:    4 GTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDARAGRMGGTTQYTVNNHMV 447
            GTH AV+SSY+Y+SQGLR Y+ DNT+ G YIAPAFMDKLVVH++KNFM+LPNIK+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I+KGKMCCL INDLDA AGRMGGTTQYTVNN MV
Sbjct:   93 GTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 240          
BLAST of EY679277 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 1.579e-72
Identity = 129/149 (86.58%), Postives = 138/149 (92.62%), Query Frame = 1
Query:    1 TGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDARAGRMGGTTQYTVNNHMV 447
            TGTH AV+SSY+YIS GLR Y+ DN +DG YIAPAFMDKL VHI KNF++LPNIKVPLILG+WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL INDLDA AGR+GGTTQYTVNN MV
Sbjct:   99 TGTHNAVLSSYEYISAGLRDYSYDNNVDGFYIAPAFMDKLTVHIVKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRLGGTTQYTVNNQMV 247          
BLAST of EY679277 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 2.694e-72
Identity = 131/148 (88.51%), Postives = 139/148 (93.92%), Query Frame = 1
Query:    4 GTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDARAGRMGGTTQYTVNNHMV 447
            GTH A++SSY+YISQGLR Y+ DNT+DGLYIAPAFMDKL+VH+ KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN GEPAKLIRQRYREAADII KGKMCCL INDLDA AGRMGGTTQYTVNN MV
Sbjct:   91 GTHEAILSSYEYISQGLRKYDFDNTMDGLYIAPAFMDKLIVHLAKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN-GEPAKLIRQRYREAADIINKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 237          
The following BLAST results are available for this feature:
BLAST of EY679277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RCA2_LARTR2.781e-7792.62Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_LARTR2.781e-7792.62Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH5.799e-7589.26Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ3.759e-7489.86Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_TOBAC3.759e-7488.59Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_TOBAC1.094e-7386.58Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN1.866e-7386.58Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU7.089e-7387.16Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA1.579e-7286.58Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU2.694e-7288.51Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-058-D08-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679277 ID=EY679277; Name=EY679277; organism=Citrus sinensis; type=EST; length=467bp
ACCGGAACTCACTATGCTGTCATGAGTTCTTATGACTACATCAGCCAAGG
TCTCCGCACATACAACTTGGACAACACGATCGACGGTCTCTACATTGCCC
CTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCATGTCC
CTGCCCAACATCAAGGTTCCTCTCATCTTGGGTATTTGGGGAGGCAAAGG
ACAAGGAAAATCATTCCAATGTGAGCTTGTTTTCGCCAAGATGGGCATCA
ACCCAATTATGATGAGTGCCGGAGAATTGGAAAGTGGCAATGCTGGAGAA
CCCGCTAAGTTGATCAGGCAGAGGTACCGTGAGGCAGCTGACATTATCAG
GAAGGGAAAAATGTGCTGCCTCATGATCAATGATCTTGATGCAAGAGCTG
GTCGTATGGGTGGCACCACCCAATACACAGTTAACAACCATATGGTTAAA
CGCCACAACTCATGAAC
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