EY679275

Overview
NameEY679275
Unique NameEY679275
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1042
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679275 vs. ExPASy Swiss-Prot
Match: CP20B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplastic OS=Arabidopsis thaliana GN=CYP20-2 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.143e-31
Identity = 56/70 (80.00%), Postives = 64/70 (91.43%), Query Frame = 2
Query:  323 VRASAEVA-DLQSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKG--FH 523
            V+++AEV  + QSK+T+KVYFD+S+GNPVGKLAGRIVIGLYGDDVPQT ENFRALCTGEKGFGYKG  FH
Sbjct:   74 VQSNAEVVTEPQSKITHKVYFDISVGNPVGKLAGRIVIGLYGDDVPQTVENFRALCTGEKGFGYKGSTFH 143          

HSP 2 Score: 41.9726 bits (97), Expect = 4.143e-31
Identity = 26/51 (50.98%), Postives = 30/51 (58.82%), Query Frame = 1
Query:  541 KNFMIQGGKL**RQWNWREKV*YGRTFKEENFKLSHNGTKNYLEWEMAGPN 693
            ++FMIQGG          + V YGRTFK+ENFKLSH G    L    AGPN
Sbjct:  147 RDFMIQGGDFEKGNGTGGKSV-YGRTFKDENFKLSHVG-PGVLSMANAGPN 195          
BLAST of EY679275 vs. ExPASy Swiss-Prot
Match: CP20C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-3, chloroplastic OS=Arabidopsis thaliana GN=CYP20-3 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.586e-22
Identity = 45/72 (62.50%), Postives = 56/72 (77.78%), Query Frame = 2
Query:  314 RSLVRASAEVADLQSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKG--FH 523
            +S+     EV + Q+KVTNKVYFDV IG   G++AGRIV+GL+G+ VP+T ENFRALCTGEK +GYKG  FH
Sbjct:   77 KSMAAEEEEVIEPQAKVTNKVYFDVEIG---GEVAGRIVMGLFGEVVPKTVENFRALCTGEKKYGYKGSSFH 145          

HSP 2 Score: 32.3426 bits (72), Expect = 2.586e-22
Identity = 21/51 (41.18%), Postives = 25/51 (49.02%), Query Frame = 1
Query:  541 KNFMIQGGKL**RQWNWREKV*YGRTFKEENFKLSHNGTKNYLEWEMAGPN 693
            K+FMIQGG            + YG  F++ENF L H G    L    AGPN
Sbjct:  149 KDFMIQGGDFTEGNGTGGISI-YGAKFEDENFTLKHTG-PGILSMANAGPN 197          

HSP 3 Score: 25.7942 bits (55), Expect = 2.586e-22
Identity = 9/12 (75.00%), Postives = 12/12 (100.00%), Query Frame = 3
Query:  513 KGSTFHRVIKEF 548
            KGS+FHR+IK+F
Sbjct:  140 KGSSFHRIIKDF 151          
BLAST of EY679275 vs. ExPASy Swiss-Prot
Match: CYPB_VICFA (Peptidyl-prolyl cis-trans isomerase, chloroplastic OS=Vicia faba PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.515e-18
Identity = 41/67 (61.19%), Postives = 53/67 (79.10%), Query Frame = 2
Query:  329 ASAEVADLQSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKG--FH 523
            A  EVA+LQ+KVT+K++FD+ IG   G+ AGRIVIGL+GD VP+T ENF+ L TG KG+GY+G  FH
Sbjct:   69 AQGEVAELQAKVTSKIFFDIEIG---GESAGRIVIGLFGDAVPKTVENFKTLSTGAKGYGYQGSFFH 132          

HSP 2 Score: 29.6462 bits (65), Expect = 3.515e-18
Identity = 20/50 (40.00%), Postives = 24/50 (48.00%), Query Frame = 1
Query:  544 NFMIQGGKL**RQWNWREKV*YGRTFKEENFKLSHNGTKNYLEWEMAGPN 693
            NFMIQGG            + YG  F++E+F L H G    L    AGPN
Sbjct:  137 NFMIQGGDFTEGNGTGGVSI-YGSKFEDESFDLKHVG-PGVLSMANAGPN 184          
BLAST of EY679275 vs. ExPASy Swiss-Prot
Match: CP20A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Arabidopsis thaliana GN=CYP20-1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.405e-18
Identity = 40/71 (56.34%), Postives = 51/71 (71.83%), Query Frame = 2
Query:  305 MGTRSLVRASAEVADLQSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKG 517
            +GT S ++A     +L+ ++T+KVYFDV I    GK AGRIV+GL+G  VP+T ENFRALCTGEKG G  G
Sbjct:   15 LGTLSAIQAKKSKENLK-EITHKVYFDVEID---GKAAGRIVMGLFGKTVPKTVENFRALCTGEKGIGKNG 81          

HSP 2 Score: 30.4166 bits (67), Expect = 8.405e-18
Identity = 16/37 (43.24%), Postives = 20/37 (54.05%), Query Frame = 1
Query:  544 NFMIQGGKL**RQWNWREKV*YGRTFKEENFKLSHNG 654
            +FM+QGG          E + YG  F +ENFKL H G
Sbjct:   97 SFMLQGGDFTHGNGMGGESI-YGEKFADENFKLKHTG 132          

HSP 3 Score: 24.6386 bits (52), Expect = 8.405e-18
Identity = 10/17 (58.82%), Postives = 13/17 (76.47%), Query Frame = 3
Query:  498 RALVTKGSTFHRVIKEF 548
            +AL  KGS+FHR+I  F
Sbjct:   82 KALHYKGSSFHRIIPSF 98          
BLAST of EY679275 vs. ExPASy Swiss-Prot
Match: PPIB_EMENI (Peptidyl-prolyl cis-trans isomerase B OS=Emericella nidulans GN=cpr2 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 6.341e-17
Identity = 38/57 (66.67%), Postives = 45/57 (78.95%), Query Frame = 2
Query:  359 KVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKG--FH 523
            K+TNKVYFD+  G+   +  GRIV+GLYG  VP+TAENFRAL TGEKGFGY+G  FH
Sbjct:   31 KITNKVYFDIQHGD---ESLGRIVLGLYGKTVPETAENFRALATGEKGFGYEGSNFH 84          

HSP 2 Score: 32.7278 bits (73), Expect = 6.341e-17
Identity = 18/39 (46.15%), Postives = 22/39 (56.41%), Query Frame = 1
Query:  541 KNFMIQGGKL**RQWNWREKV*YGRTFKEENFKLSHNGT 657
            K+FMIQGG          + + YG  FK+ENFKL H  T
Sbjct:   88 KDFMIQGGDFTRGDGTGGKSI-YGAKFKDENFKLRHTKT 125          
BLAST of EY679275 vs. ExPASy Swiss-Prot
Match: CP19D_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Arabidopsis thaliana GN=CYP19-4 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 6.664e-17
Identity = 39/63 (61.90%), Postives = 46/63 (73.02%), Query Frame = 2
Query:  329 ASAEVADLQSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKG 517
            AS +  +   +VT+KVYFDV I    GK AGR+VIGL+G  VP+TAENFRALCTGEKG G  G
Sbjct:   19 ASIQAKEDLKEVTHKVYFDVEID---GKSAGRVVIGLFGKAVPKTAENFRALCTGEKGVGKSG 78          

HSP 2 Score: 31.5722 bits (70), Expect = 6.664e-17
Identity = 17/37 (45.95%), Postives = 21/37 (56.76%), Query Frame = 1
Query:  544 NFMIQGGKL**RQWNWREKV*YGRTFKEENFKLSHNG 654
            +FMIQGG          E + YG+ F +ENFKL H G
Sbjct:   94 SFMIQGGDFTHGNGMGGESI-YGQKFADENFKLKHTG 129          

HSP 3 Score: 21.9422 bits (45), Expect = 6.664e-17
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = 3
Query:  513 KGSTFHRVIKEF 548
            KGS FHR+I  F
Sbjct:   84 KGSKFHRIIPSF 95          
BLAST of EY679275 vs. ExPASy Swiss-Prot
Match: PPIC_MOUSE (Peptidyl-prolyl cis-trans isomerase C OS=Mus musculus GN=Ppic PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.072e-16
Identity = 45/91 (49.45%), Postives = 57/91 (62.64%), Query Frame = 2
Query:  263 LTPVPPLTHFPTRKMGTRSLVRASAE--VADLQSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKG--FH 523
            ++P P L       +G  +LV +S    V      VT+KV+FDV IG+   K  GRIVIGL+G+ VP+T ENF AL TGEKG+GYKG  FH
Sbjct:    1 MSPGPRLLLPAVLCLGLGALVSSSGSSGVRKRGPSVTDKVFFDVRIGD---KDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFH 88          

HSP 2 Score: 36.965 bits (84), Expect = 1.072e-16
Identity = 22/51 (43.14%), Postives = 28/51 (54.90%), Query Frame = 1
Query:  541 KNFMIQGGKL**RQWNWREKV*YGRTFKEENFKLSHNGTKNYLEWEMAGPN 693
            K+FMIQGG    R       + YG TF +ENFKL H G   ++    AGP+
Sbjct:   92 KDFMIQGGDFTARDGTGGMSI-YGETFPDENFKLKHYGI-GWVSMANAGPD 140          
BLAST of EY679275 vs. ExPASy Swiss-Prot
Match: PPIB_GIBZE (Peptidyl-prolyl cis-trans isomerase B OS=Gibberella zeae GN=CPR2 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.064e-16
Identity = 39/75 (52.00%), Postives = 50/75 (66.67%), Query Frame = 2
Query:  305 MGTRSLVRASAEVADLQSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKG--FH 523
            +G   L  A    A    K+T+KVYFD++ G+   +  GR+V+GLYG  VP+T ENFRAL TGEKGFGY+G  FH
Sbjct:   14 LGLGLLFLAQTAEAAKGPKITHKVYFDITQGD---QPLGRVVMGLYGKTVPETTENFRALATGEKGFGYEGSAFH 85          

HSP 2 Score: 33.8834 bits (76), Expect = 3.064e-16
Identity = 22/49 (44.90%), Postives = 25/49 (51.02%), Query Frame = 1
Query:  541 KNFMIQGGKL**RQWNWREKV*YGRTFKEENFKLSHNGTKNYLEWEMAG 687
            KNFMIQGG          + + YG  FK+ENFKL H   K  L    AG
Sbjct:   89 KNFMIQGGDFTKGDGTGGKSI-YGDRFKDENFKLKHT-KKGLLSMANAG 135          
BLAST of EY679275 vs. ExPASy Swiss-Prot
Match: PPIB_ORPSP (Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyces sp. (strain PC-2) GN=CYPB PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.068e-16
Identity = 39/62 (62.90%), Postives = 45/62 (72.58%), Query Frame = 2
Query:  344 ADLQSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKG--FH 523
            A    KVTNKVYFD+  G+   K  GRIV+GLYG+ VP+T ENFRAL TGEKG+GYK   FH
Sbjct:   22 ASTNPKVTNKVYFDIKQGD---KDLGRIVLGLYGEVVPKTVENFRALATGEKGYGYKNSKFH 80          

HSP 2 Score: 31.9574 bits (71), Expect = 3.068e-16
Identity = 17/38 (44.74%), Postives = 21/38 (55.26%), Query Frame = 1
Query:  541 KNFMIQGGKL**RQWNWREKV*YGRTFKEENFKLSHNG 654
            K+FMIQGG          + + YG  F +ENFKL H G
Sbjct:   84 KDFMIQGGDFTRGDGTGGKSI-YGERFADENFKLRHTG 120          
BLAST of EY679275 vs. ExPASy Swiss-Prot
Match: PPIB_YARLI (Peptidyl-prolyl cis-trans isomerase B OS=Yarrowia lipolytica GN=CPR2 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.968e-16
Identity = 36/62 (58.06%), Postives = 46/62 (74.19%), Query Frame = 2
Query:  344 ADLQSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKG--FH 523
            A+  +++T+KVYFD+  G    +  G+IV+GLYGD VP+T ENFRALCTGE G GYKG  FH
Sbjct:   24 AEPDAEITHKVYFDIKQGE---ESLGKIVMGLYGDVVPKTVENFRALCTGETGKGYKGSKFH 82          

HSP 2 Score: 34.6538 bits (78), Expect = 3.968e-16
Identity = 21/42 (50.00%), Postives = 24/42 (57.14%), Query Frame = 1
Query:  541 KNFMIQGGKL**RQWNWREKV*YGRTFKEENFKLSHNGTKNY 666
            KNFMIQGG          E + YGR F +ENF+L H  TK Y
Sbjct:   86 KNFMIQGGDFTRGDGTGGESI-YGRKFPDENFQLKH--TKPY 124          
The following BLAST results are available for this feature:
BLAST of EY679275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
CP20B_ARATH4.143e-3180.00Peptidyl-prolyl cis-trans isomerase CYP20-2, chlor... [more]
CP20C_ARATH2.586e-2262.50Peptidyl-prolyl cis-trans isomerase CYP20-3, chlor... [more]
CYPB_VICFA3.515e-1861.19Peptidyl-prolyl cis-trans isomerase, chloroplastic... [more]
CP20A_ARATH8.405e-1856.34Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Ara... [more]
PPIB_EMENI6.341e-1766.67Peptidyl-prolyl cis-trans isomerase B OS=Emericell... [more]
CP19D_ARATH6.664e-1761.90Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Ara... [more]
PPIC_MOUSE1.072e-1649.45Peptidyl-prolyl cis-trans isomerase C OS=Mus muscu... [more]
PPIB_GIBZE3.064e-1652.00Peptidyl-prolyl cis-trans isomerase B OS=Gibberell... [more]
PPIB_ORPSP3.068e-1662.90Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyc... [more]
PPIB_YARLI3.968e-1658.06Peptidyl-prolyl cis-trans isomerase B OS=Yarrowia ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-058-D06-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679275 ID=EY679275; Name=EY679275; organism=Citrus sinensis; type=EST; length=1042bp
GAAACGGGTCCGGGAATCCCGGGTCGACCACGCGTCCGTTTTATCTGAAT
CTCTCAACCCACCGACTCTGAGGCACTTGTCCATTCCATCAATGGCGGCA
GCGGCTTCATTCGCAGCCCAGATAAATGTAGGCTCGGTCTCAGGCCCACT
TCAACTGAACAAAGCTCTCAGTCCCTCGCGTAATGCAATCGAGATACCCA
GAAAATCTTCTTCATTCCTATCAAATGCTTCATCATCCTGCTCCAGCTTC
TTCTCCCGTCCGTTGACTCCCGTTCCCCCTCTCACTCATTTTCCCACCAG
GAAAATGGGTACGCGTAGCCTTGTTCGGGCCAGTGCTGAGGTAGCTGATT
TACAATCGAAAGTTACCAATAAAGTTTATTTCGATGTGAGCATTGGGAAT
CCAGTAGGAAAGCTTGCTGGAAGAATCGTGATTGGATTGTACGGTGATGA
TGTGCCCCAAACGGCAGAGAACTTCCGTGCTTTATGCACTGGAGAGAAGG
GCTTTGGTTACAAAGGGTTCCACGTTCCATCGTGTTATCAAAGAATTTCA
TGATCCAAGGGGGAAAACTTTGATAAAGGCAATGGAACTGGAGGGAAAAA
GTATAATACGGCCGAACATTCAAAGAAGAGAACTTCAAATTGTCGCATAA
TGGAACCAAGAATTATTTAGAATGGGAAATGGCAGGCCCCAACATCTAAT
GGGCAGCCAATTTTTTTTTTTTGGTCGGGTCATAAACCATTGGTTAAATT
AAAGGCCTTGTTGTCTTTTGGATAATTTTTTGGAAGGGGGCTGGAATATT
TGTTTAAGCCTATTTGGGTTCACCGGGAAATGGGAAGGGGGGACACCTGT
CCGGGAAAAAAAGGGGTGGCTATTTATTGGATTTTGTGGGGGGATATTCA
ATAGAGGGTTGGGAAACCCCGAAAAGGAGTGCTAATTAACAATTTTTTTT
TTTCGGGAGGCTTTTTTTTATAATATTTATTTGAGAAAAATTATTTTTTG
GCACAGAGTGTTTAAAGAATGAGATTTTTTTTTTTTGTTTTA
back to top