EY679274

Overview
NameEY679274
Unique NameEY679274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length995
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679274 vs. ExPASy Swiss-Prot
Match: PSAH_BRARA (Photosystem I reaction center subunit VI, chloroplastic OS=Brassica rapa GN=PSAH PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 5.388e-45
Identity = 91/124 (73.39%), Postives = 101/124 (81.45%), Query Frame = 2
Query:    2 SLATIAAVQP-ATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDI 370
            S ATIAAVQP + +KGLGGSSL G KL +KP+RQSF+PKS +AGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKR            S L Y SA+++GD+
Sbjct:    3 SFATIAAVQPYSAVKGLGGSSLTGAKLFIKPSRQSFKPKSTRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSASSTGDV 126          
BLAST of EY679274 vs. ExPASy Swiss-Prot
Match: PSAH2_ARATH (Photosystem I reaction center subunit VI-2, chloroplastic OS=Arabidopsis thaliana GN=PSAH2 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 2.048e-44
Identity = 91/124 (73.39%), Postives = 100/124 (80.65%), Query Frame = 2
Query:    2 SLATIAAVQP-ATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDI 370
            S ATIAAVQP A +KGLGGSSLAG KL +KP+RQSF+ KS +AGAVVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR            S L Y SA ++GD+
Sbjct:    3 SFATIAAVQPSAAVKGLGGSSLAGAKLFIKPSRQSFKTKSTRAGAVVAKYGDKSVYFDLEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSANSTGDV 126          
BLAST of EY679274 vs. ExPASy Swiss-Prot
Match: PSAH1_ARATH (Photosystem I reaction center subunit VI-1, chloroplastic OS=Arabidopsis thaliana GN=PSAH1 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 4.561e-44
Identity = 89/124 (71.77%), Postives = 101/124 (81.45%), Query Frame = 2
Query:    2 SLATIAAVQP-ATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDI 370
            SLAT+AAV+P A IKGLGGSSLAG KL++KP+R SF+PKS +A  VVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR            S L Y SAT++G++
Sbjct:    3 SLATVAAVKPSAAIKGLGGSSLAGAKLSIKPSRLSFKPKSIRANGVVAKYGDKSVYFDLEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSATSTGEV 126          
BLAST of EY679274 vs. ExPASy Swiss-Prot
Match: PSAH_SPIOL (Photosystem I reaction center subunit VI, chloroplastic OS=Spinacia oleracea GN=PSAH PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 6.587e-43
Identity = 85/123 (69.11%), Postives = 97/123 (78.86%), Query Frame = 2
Query:    2 SLATIAAVQPATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDI 370
            SLAT+AAVQP T+KGL GSS+AGTKL +KP RQSF+  + ++GA+VAKYGDKSVYFDLED+ NTTGQWD+YGSDAPSPYNSLQSKFFETFAAPFTKR            S L Y SA A  D+
Sbjct:    3 SLATLAAVQPTTLKGLAGSSIAGTKLHIKPARQSFKLNNVRSGAIVAKYGDKSVYFDLEDIANTTGQWDVYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSANAPQDV 125          
BLAST of EY679274 vs. ExPASy Swiss-Prot
Match: PSAH_ORYSJ (Photosystem I reaction center subunit VI, chloroplastic OS=Oryza sativa subsp. japonica GN=PSAH PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 2.269e-35
Identity = 77/127 (60.63%), Postives = 93/127 (73.23%), Query Frame = 2
Query:    5 LATIAAVQPATIKGLGGSSLAGTKLTVKPT-----RQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDI 370
            +A++ AVQP  +KGL GSS++G KL V+P+     R + RP++    AVVAKYG+KSVYFDLED+GNTTGQWDLYGSDAPSPYN LQSKFFETFA PFTKR            S +AY SA+AS D+
Sbjct:    1 MASLVAVQPVAVKGLAGSSISGRKLAVRPSPRALCRTTRRPRA----AVVAKYGEKSVYFDLEDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAGPFTKRGLLLKFLLLGGGSLVAYVSASASPDL 123          
BLAST of EY679274 vs. ExPASy Swiss-Prot
Match: PSAH_ORYSI (Photosystem I reaction center subunit VI, chloroplastic OS=Oryza sativa subsp. indica GN=PSAH PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 2.269e-35
Identity = 77/127 (60.63%), Postives = 93/127 (73.23%), Query Frame = 2
Query:    5 LATIAAVQPATIKGLGGSSLAGTKLTVKPT-----RQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDI 370
            +A++ AVQP  +KGL GSS++G KL V+P+     R + RP++    AVVAKYG+KSVYFDLED+GNTTGQWDLYGSDAPSPYN LQSKFFETFA PFTKR            S +AY SA+AS D+
Sbjct:    1 MASLVAVQPVAVKGLAGSSISGRKLAVRPSPRALCRTTRRPRA----AVVAKYGEKSVYFDLEDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAGPFTKRGLLLKFLLLGGGSLVAYVSASASPDL 123          
BLAST of EY679274 vs. ExPASy Swiss-Prot
Match: PSAH_MAIZE (Photosystem I reaction center subunit VI, chloroplastic OS=Zea mays GN=PSAH PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 5.055e-35
Identity = 80/125 (64.00%), Postives = 94/125 (75.20%), Query Frame = 2
Query:    5 LATIAAV--QPATIKGLGGSSLAGTKLTV-KPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDI 370
            +A++AAV  +P  IKGL GSS++G KL V +P+ +S R    +A AVVAKYGDKSVYFDL+D+GNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKR            S LAY SA+AS D+
Sbjct:    1 MASLAAVSVKPVAIKGLAGSSISGRKLAVARPSARSIRRP--RAAAVVAKYGDKSVYFDLDDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLLLGGGSLLAYVSASASPDL 123          
BLAST of EY679274 vs. ExPASy Swiss-Prot
Match: PSAH_HORVU (Photosystem I reaction center subunit VI, chloroplastic OS=Hordeum vulgare GN=PSAH PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 8.623e-35
Identity = 74/124 (59.68%), Postives = 91/124 (73.39%), Query Frame = 2
Query:    5 LATIAAVQPATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKA--GAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDI 370
            +A++ AVQPA +KGL GSS++G KL V+P+  +    + +A   AVVAKYG+KSVYFDL+D+ NTTGQWDLYGSDAPSPYN LQSKFF TFAAPFTKR            S +AY SA+AS D+
Sbjct:    1 MASLVAVQPAAVKGLSGSSISGRKLAVRPSSAAVSRSTRRARGAAVVAKYGEKSVYFDLDDIANTTGQWDLYGSDAPSPYNGLQSKFFNTFAAPFTKRGLLLKFLLIGGGSLVAYVSASASPDL 124          
BLAST of EY679274 vs. ExPASy Swiss-Prot
Match: PSAH_PEA (Photosystem I reaction center subunit VI (Fragment) OS=Pisum sativum GN=PSAH PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.869e-13
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 2
Query:  143 KYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQ 250
            KYGDKSVYFDLED+GNTTGQWDLYGSDAPSPY+ LQ
Sbjct:    1 KYGDKSVYFDLEDIGNTTGQWDLYGSDAPSPYSXLQ 36          
The following BLAST results are available for this feature:
BLAST of EY679274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PSAH_BRARA5.388e-4573.39Photosystem I reaction center subunit VI, chloropl... [more]
PSAH2_ARATH2.048e-4473.39Photosystem I reaction center subunit VI-2, chloro... [more]
PSAH1_ARATH4.561e-4471.77Photosystem I reaction center subunit VI-1, chloro... [more]
PSAH_SPIOL6.587e-4369.11Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_ORYSJ2.269e-3560.63Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_ORYSI2.269e-3560.63Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_MAIZE5.055e-3564.00Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_HORVU8.623e-3559.68Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_PEA1.869e-1391.67Photosystem I reaction center subunit VI (Fragment... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-058-D05-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679274 ID=EY679274; Name=EY679274; organism=Citrus sinensis; type=EST; length=995bp
ATCTCTTGCAACCATAGCTGCTGTGCAACCAGCCACCATCAAAGGCCTTG
GAGGCAGCTCTCTTGCTGGAACTAAGCTCACCGTCAAGCCAACTCGCCAG
AGTTTCAGACCCAAAAGCTTCAAGGCTGGTGCTGTTGTGGCTAAGTATGG
TGATAAGAGTGTGTACTTTGATTTGGAGGATTTGGGCAACACTACGGGCC
AGTGGGACTTGTACGGATCAGATGCTCCTTCACCGTACAACTCTCTTCAG
AGCAAGTTCTTTGAGACATTTGCGGCTCCATTCACCAAGAGAGGATTATT
GCTCAAGTTCTTGATATTGGGAGGAGGTTCAACCCTTGCTTACTTCAGTG
CTACAGCTAGTGGTGACATTCTCCCAATCAAGAAGGGCCCTCAACTTCCA
CCAAAGCTCGGACCACGTGGCAAGATCTAAATTAATTTTCAATCCTCATA
TTTTTAACTTTTCATTGTATGTATCTTCTTGTTATTGTAAACCTGTAAGT
TTGTCCAACATCCTACTTAAAACTTCCTTTGTTATTTAATGCCAATATAT
TTGCTTCAATTGACAACAAAATAAACCAAATATGTAAATCAATCATGCAT
AATAAAAAGGGGGGGCCGCCTTCTAAAAGATACCCAGCTTACGTAACCCT
TGCATTGGAACGCCCTAACTCTTCTAATAGGGTCACCTTAAATTTAATTT
ATTGGGCGCGCCGTTTTAAACCAGCTGCGGAAGGGGGGAAAACCTGGGGT
ATTACCCCAATTTAATACCGCTTTTAAAACAAAACCCCCTTTTTCCCCGA
AAGGGAGAAATAAAAAAAAAAAGCCCCCCAACGATACCACCCTTCCCAAA
AATTTTTTCAAAAACCTTAGAAGAGGAAAAGAGGAAAACTCCCCCCTGAA
CTACGCCCAATTTTTTCCGCCCCGGGGGGGGGGGGGTGGGTTTTAATTCC
ACCAGGGGGATAATCTTCAATCATCATTGATGCCCCGCTCGCCTC
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