EY679270

Overview
NameEY679270
Unique NameEY679270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length483
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679270 vs. ExPASy Swiss-Prot
Match: CHLD_TOBAC (Magnesium-chelatase subunit chlD, chloroplastic OS=Nicotiana tabacum GN=CHLD PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 4.694e-30
Identity = 67/69 (97.10%), Postives = 67/69 (97.10%), Query Frame = 2
Query:    2 ELKDEILEVAGKIYKAGMSLLVIDTENKFVSTGFAKEIARVAQGKYYYLPNASDAVISATTKDALSALK 208
            ELKDEILEVAGKIYK GMSLLVIDTENKFVSTGFAKEIARVAQGKYYYLPNASDAVISA TKDALSALK
Sbjct:  688 ELKDEILEVAGKIYKTGMSLLVIDTENKFVSTGFAKEIARVAQGKYYYLPNASDAVISAATKDALSALK 756          
BLAST of EY679270 vs. ExPASy Swiss-Prot
Match: CHLD_ARATH (Magnesium-chelatase subunit chlD, chloroplastic OS=Arabidopsis thaliana GN=CHLD PE=2 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 4.694e-30
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 2
Query:    2 ELKDEILEVAGKIYKAGMSLLVIDTENKFVSTGFAKEIARVAQGKYYYLPNASDAVISATTKDALSALK 208
            ELKDEILEVAGKIYKAGMSLLVIDTENKFVSTGFAKEIARVAQGKYYYLPNASDAVISATT+DALS LK
Sbjct:  690 ELKDEILEVAGKIYKAGMSLLVIDTENKFVSTGFAKEIARVAQGKYYYLPNASDAVISATTRDALSDLK 758          
BLAST of EY679270 vs. ExPASy Swiss-Prot
Match: CHLD_PEA (Magnesium-chelatase subunit chlD, chloroplastic OS=Pisum sativum GN=CHLD PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.848e-27
Identity = 60/69 (86.96%), Postives = 65/69 (94.20%), Query Frame = 2
Query:    2 ELKDEILEVAGKIYKAGMSLLVIDTENKFVSTGFAKEIARVAQGKYYYLPNASDAVISATTKDALSALK 208
            ELKDEI+EVA KIYK GMSLLVIDTENKFVSTGFAKEIARVAQGKYYYLPNASDAV+S  T++AL+ALK
Sbjct:  684 ELKDEIIEVAAKIYKTGMSLLVIDTENKFVSTGFAKEIARVAQGKYYYLPNASDAVVSLATREALAALK 752          
BLAST of EY679270 vs. ExPASy Swiss-Prot
Match: CHLD_SYNY3 (Magnesium-chelatase subunit chlD OS=Synechocystis sp. (strain PCC 6803) GN=chlD PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.341e-13
Identity = 36/69 (52.17%), Postives = 51/69 (73.91%), Query Frame = 2
Query:    2 ELKDEILEVAGKIYKAGMSLLVIDTENKFVSTGFAKEIARVAQGKYYYLPNASDAVISATTKDALSALK 208
            ++K E+LE+A KI   GM LLVI+TE KFVSTGF KE+A+ A GKYY LP A+D  I++  + A++ ++
Sbjct:  608 DIKAELLEIAAKIRGLGMQLLVINTEKKFVSTGFGKELAQKAGGKYYQLPKATDQGIASMARQAIADMQ 676          
BLAST of EY679270 vs. ExPASy Swiss-Prot
Match: CHLD_SYNE7 (Magnesium-chelatase subunit chlD OS=Synechococcus elongatus (strain PCC 7942) GN=chlD PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 8.894e-13
Identity = 35/67 (52.24%), Postives = 46/67 (68.66%), Query Frame = 2
Query:    2 ELKDEILEVAGKIYKAGMSLLVIDTENKFVSTGFAKEIARVAQGKYYYLPNASDAVISATTKDALSA 202
            +LK+E+L++A +I    M LLVIDTE KFV  GF KE+A  A G+YY+LP  SD  I+A  + AL A
Sbjct:  608 DLKEELLDIAKRIRGLSMQLLVIDTERKFVGAGFGKELANAAGGQYYHLPKVSDQAIAAMAQSALRA 674          
BLAST of EY679270 vs. ExPASy Swiss-Prot
Match: BCHD_HELMO (Magnesium-chelatase 67 kDa subunit OS=Heliobacillus mobilis GN=bchD PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.374e-11
Identity = 33/69 (47.83%), Postives = 47/69 (68.12%), Query Frame = 2
Query:    2 ELKDEILEVAGKIYKAGMSLLVIDTENKFVSTGFAKEIARVAQGKYYYLPNASDAVISATTKDALSALK 208
            +L +EIL ++  + + G S+LVIDT NKF STGFAK+IA  A  +YYYLP  + A ++ T K  + AL+
Sbjct:  597 QLNEEILALSRLVPENGFSMLVIDTANKFTSTGFAKKIADAAFAQYYYLPKMTAASLAETVKSGVHALR 665          
The following BLAST results are available for this feature:
BLAST of EY679270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
CHLD_TOBAC4.694e-3097.10Magnesium-chelatase subunit chlD, chloroplastic OS... [more]
CHLD_ARATH4.694e-3097.10Magnesium-chelatase subunit chlD, chloroplastic OS... [more]
CHLD_PEA2.848e-2786.96Magnesium-chelatase subunit chlD, chloroplastic OS... [more]
CHLD_SYNY32.341e-1352.17Magnesium-chelatase subunit chlD OS=Synechocystis ... [more]
CHLD_SYNE78.894e-1352.24Magnesium-chelatase subunit chlD OS=Synechococcus ... [more]
BCHD_HELMO6.374e-1147.83Magnesium-chelatase 67 kDa subunit OS=Heliobacillu... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-058-C12-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679270 ID=EY679270; Name=EY679270; organism=Citrus sinensis; type=EST; length=483bp
AGAATTGAAGGATGAGATTCTTGAAGTTGCTGGGAAAATATACAAAGCAG
GGATGTCTCTCTTAGTTATCGACACAGAAAACAAGTTTGTTTCTACTGGC
TTTGCCAAAGAGATTGCCAGAGTTGCTCAAGGAAAATATTACTACTTGCC
AAATGCTTCAGATGCTGTTATTTCAGCTACGACCAAGGATGCTTTATCAG
CATTGAAGAATTCTTGATTTTTGTCCCTCTTCTATTTTTTATTTTTTAAC
TTTCTTATTTGGTATTAACAAAATCCTTTGATAGCATGTTCAAAAAGAAA
CAACCGACATTTATCCATTTCTCATATTGTGTAGCCTGTGAAACGTATGG
CTTACATTTTCTTTTATTTTTTTCTTTTTTTTTTTTATAATTTTTCGATG
GACTGTATGAAATGTATGTTACAAGTTTCATTGAGATACAAAGAAACAAA
AAAAAGAAAAAAGAAAAAAAAAAAGGGAGGGGC
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