EY679240

Overview
NameEY679240
Unique NameEY679240
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length970
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679240 vs. ExPASy Swiss-Prot
Match: RRP2_SPIOL (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.271e-43
Identity = 91/128 (71.09%), Postives = 104/128 (81.25%), Query Frame = 3
Query:    3 KTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 386
            KTVEDANAVIEKLN TEIGGR+IKVNITEKPL  +D++  QAEDS FV+S YKVY+GNLAKTVT+E+LK  FSEKG+VL AKV R PGTSKS+GFGFV+F            LNNS+LEGQ+IRVNKA
Sbjct:  133 KTVEDANAVIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAEDSQFVESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRVNKA 260          
BLAST of EY679240 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.762e-14
Identity = 45/130 (34.62%), Postives = 74/130 (56.92%), Query Frame = 3
Query:    6 TVEDANAVIEKLNGTEIGGREIKVNITEKPLA---QVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 386
            +VE+A   I   +G+++GGR +KVN  E P     +V  + +++    FVDS +K+YV NL+  +TS+ L+  F+++   +SAKV     + +S GFGF+TF            +N   LEG+ +R+N A
Sbjct:  164 SVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVA 293          
BLAST of EY679240 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.734e-11
Identity = 48/127 (37.80%), Postives = 68/127 (53.54%), Query Frame = 3
Query:    6 TVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 386
            TVE+A   +E LNG ++ GR++ VN      A    S  +A   +F  S  +VYVGNL   V +  L++ FSE G+V+SA+V     T +S GFGFVT             L+   L+G+ +RVN A
Sbjct:  105 TVEEAEKAVELLNGYDMDGRQLTVN-----KAAPRGSPERAPRGDFEPSC-RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVA 225          
BLAST of EY679240 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.876e-11
Identity = 50/147 (34.01%), Postives = 68/147 (46.26%), Query Frame = 3
Query:    6 TVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNF--------------------VDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 386
            T E+  A  ++ NG EI GR I+VN    P  + + S       N                     VDS+ +VYVGNL+  V    LK+ FSE+G V+ AKV     + +S GFGFVT+            LN   L+G+ IRV+ A
Sbjct:  137 TKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAA 283          
BLAST of EY679240 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.876e-11
Identity = 50/147 (34.01%), Postives = 68/147 (46.26%), Query Frame = 3
Query:    6 TVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNF--------------------VDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 386
            T E+  A  ++ NG EI GR I+VN    P  + + S       N                     VDS+ +VYVGNL+  V    LK+ FSE+G V+ AKV     + +S GFGFVT+            LN   L+G+ IRV+ A
Sbjct:  138 TKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAA 284          
BLAST of EY679240 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.876e-11
Identity = 47/134 (35.07%), Postives = 70/134 (52.24%), Query Frame = 3
Query:   12 EDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNF---------VDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 386
            E+  A  ++ NG E+ GR ++VN    P  + + S    E+S+F          DS+ +VYVGNLA  V  + L+  FSE+G+V+ AKV     + +S GFGFVT+            L+   L G+ IRV+ A
Sbjct:  139 EEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSF--RENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPA 270          
BLAST of EY679240 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.369e-11
Identity = 44/126 (34.92%), Postives = 66/126 (52.38%), Query Frame = 3
Query:   12 EDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQ-AEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 386
            E+  A  ++ NG E+ GR ++VN    P  + + S    +      DS+ +VYVGNLA  V  + L+  FSE+G+V+ AKV     + +S GFGFVT+            L+   L G+ IRV+ A
Sbjct:  139 EEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPA 264          
The following BLAST results are available for this feature:
BLAST of EY679240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
RRP2_SPIOL1.271e-4371.0930S ribosomal protein 2, chloroplastic OS=Spinacia... [more]
ROC5_NICSY2.762e-1434.6233 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_SPIOL3.734e-1137.8028 kDa ribonucleoprotein, chloroplastic OS=Spinaci... [more]
ROC2_NICSY4.876e-1134.0129 kDa ribonucleoprotein B, chloroplastic OS=Nicot... [more]
ROC2_NICPL4.876e-1134.0131 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_NICPL4.876e-1135.0730 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_NICSY6.369e-1134.9229 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-058-A03-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679240 ID=EY679240; Name=EY679240; organism=Citrus sinensis; type=EST; length=970bp
TGAAAACTGTTGAGGATGCCAATGCAGTGATTGAGAAACTGAACGGCACT
GAAATTGGTGGACGTGAGATCAAAGTAAACATCACAGAGAAACCTTTGGC
GCAAGTTGATTTGTCCCTCCTCCAAGCAGAGGATTCTAACTTTGTGGACA
GTACGTATAAAGTTTATGTAGGAAATCTTGCAAAGACAGTGACCTCGGAA
ATGCTCAAAAAAAATTTCTCTGAGAAGGGACAGGTTCTTAGTGCAAAGGT
TTCGCGGGTTCCAGGAACATCAAAATCATCTGGTTTTGGGTTTGTTACCT
TCTCTTCAGAAGAGGATGCTGAAGCTGCCATCTCTTCTCTTAACAATTCT
CTGCTGGAAGGGCAACGAATTCGTGTAAACAAGGCATAGTATGTGACCCG
TGGCAGCATCTATAGGATTCTGGAAAGTGTTCTACTTGTTGCAACCATTG
TATTTGAAATGTAAAACACAGGAATTAGAAGTATTGTAGTTCTCTTTTTT
AAATTGTTAAGATGTGGAAAGCTTGGCTGGTTCTCGGTCAAGGGATGTGA
AGCGTTCAATTTTCAACAAAGTGGAGTCAAGCCTTTTGTTTGCAGGCTTC
ACTTCATTTGGGTTGAAAATTTTGAAAAACTTAAACCTTTGTTTCTTGGA
CCAACGAAATTTTCAATGGTTTTTTCCCCTTTATGGGCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAGGGGGGGCCGCCTTAAAGGGAATCAAAGT
TAATATAACCGGGGGGTGGCAAAGACCAAAGCCCTTCATAAAGGGGCCCC
CAAATTACATTCCGCGGGGCGCGCGTTTTAAAACAGCCCGGGGGGGGGGG
AAAAACCCCGGGGGGGTACACCCATAAATTATCCCCCCCTTGGGACACCT
ACCCCCCCCTTTTTCCCCCGCATCGGGGGGCAAAAAAAAAAGAAAAAAAA
GGCCCCCCCCCCCCCCCGTT
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