EY679240
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY679240 vs. ExPASy Swiss-Prot
Match: RRP2_SPIOL (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1) HSP 1 Score: 177.178 bits (448), Expect = 1.271e-43 Identity = 91/128 (71.09%), Postives = 104/128 (81.25%), Query Frame = 3 Query: 3 KTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 386 KTVEDANAVIEKLN TEIGGR+IKVNITEKPL +D++ QAEDS FV+S YKVY+GNLAKTVT+E+LK FSEKG+VL AKV R PGTSKS+GFGFV+F LNNS+LEGQ+IRVNKA Sbjct: 133 KTVEDANAVIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAEDSQFVESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRVNKA 260
BLAST of EY679240 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 2.762e-14 Identity = 45/130 (34.62%), Postives = 74/130 (56.92%), Query Frame = 3 Query: 6 TVEDANAVIEKLNGTEIGGREIKVNITEKPLA---QVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 386 +VE+A I +G+++GGR +KVN E P +V + +++ FVDS +K+YV NL+ +TS+ L+ F+++ +SAKV + +S GFGF+TF +N LEG+ +R+N A Sbjct: 164 SVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVA 293
BLAST of EY679240 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 3.734e-11 Identity = 48/127 (37.80%), Postives = 68/127 (53.54%), Query Frame = 3 Query: 6 TVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 386 TVE+A +E LNG ++ GR++ VN A S +A +F S +VYVGNL V + L++ FSE G+V+SA+V T +S GFGFVT L+ L+G+ +RVN A Sbjct: 105 TVEEAEKAVELLNGYDMDGRQLTVN-----KAAPRGSPERAPRGDFEPSC-RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVA 225
BLAST of EY679240 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 4.876e-11 Identity = 50/147 (34.01%), Postives = 68/147 (46.26%), Query Frame = 3 Query: 6 TVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNF--------------------VDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 386 T E+ A ++ NG EI GR I+VN P + + S N VDS+ +VYVGNL+ V LK+ FSE+G V+ AKV + +S GFGFVT+ LN L+G+ IRV+ A Sbjct: 137 TKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAA 283
BLAST of EY679240 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 4.876e-11 Identity = 50/147 (34.01%), Postives = 68/147 (46.26%), Query Frame = 3 Query: 6 TVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNF--------------------VDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 386 T E+ A ++ NG EI GR I+VN P + + S N VDS+ +VYVGNL+ V LK+ FSE+G V+ AKV + +S GFGFVT+ LN L+G+ IRV+ A Sbjct: 138 TKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAA 284
BLAST of EY679240 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 4.876e-11 Identity = 47/134 (35.07%), Postives = 70/134 (52.24%), Query Frame = 3 Query: 12 EDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNF---------VDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 386 E+ A ++ NG E+ GR ++VN P + + S E+S+F DS+ +VYVGNLA V + L+ FSE+G+V+ AKV + +S GFGFVT+ L+ L G+ IRV+ A Sbjct: 139 EEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSF--RENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPA 270
BLAST of EY679240 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 6.369e-11 Identity = 44/126 (34.92%), Postives = 66/126 (52.38%), Query Frame = 3 Query: 12 EDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQ-AEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 386 E+ A ++ NG E+ GR ++VN P + + S + DS+ +VYVGNLA V + L+ FSE+G+V+ AKV + +S GFGFVT+ L+ L G+ IRV+ A Sbjct: 139 EEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPA 264 The following BLAST results are available for this feature:
BLAST of EY679240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >EY679240 ID=EY679240; Name=EY679240; organism=Citrus sinensis; type=EST; length=970bpback to top |