EY679234

Overview
NameEY679234
Unique NameEY679234
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length957
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679234 vs. ExPASy Swiss-Prot
Match: IM30_PEA (Membrane-associated 30 kDa protein, chloroplastic OS=Pisum sativum GN=IM30 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 2.363e-42
Identity = 106/198 (53.54%), Postives = 130/198 (65.66%), Query Frame = 1
Query:   85 MAAKSQIVTGF-TMPMTPAPXXXXXXXXXXLCMVKKPLTTSFFNGG-VGALKVTRLRIAPSSRSYCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRWDNKCKAAEQASEDWYRKTQPCSSKRGKRSGT*GFQETQILIAKNAKALKTQIDQQKKVVNTLVS 672
            M  K QI +G  + P+ P+             ++KKPL T+ F    V  LK   +RIA   R      GGGA+  RMNLFDR ARVVKSYANA++S+FEDPEKILEQAVLEMNDDL KMRQATAQVLASQKR +NK KAA+QASE+WYRK Q  + ++G+        + +   A NA +LK Q+DQQK VV+ LVS
Sbjct:    1 MTTKFQIFSGLPSAPLQPSSS-----------LLKKPLATTLFGTRPVDTLKFRVMRIAKPVR------GGGAIGVRMNLFDRFARVVKSYANALVSTFEDPEKILEQAVLEMNDDLTKMRQATAQVLASQKRLENKYKAAQQASEEWYRKAQ-LALQKGEEDLAREALKRRKSFADNASSLKAQLDQQKSVVDNLVS 180          
BLAST of EY679234 vs. ExPASy Swiss-Prot
Match: IM30_ARATH (Probable membrane-associated 30 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=At1g65260 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 2.000e-41
Identity = 102/197 (51.78%), Postives = 126/197 (63.96%), Query Frame = 1
Query:   85 MAAKSQIVTGFTMPMTPAPXXXXXXXXXXLCMVK-KPLTTSFFNGGVGALKVTRLRIAPSSRSYCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRWDNKCKAAEQASEDWYRKTQPCSSKRGKRSGT*GFQETQILIAKNAKALKTQIDQQKKVVNTLVS 672
            MA K+  VTG   P+ P             C ++  PL TSFF    GAL+V  LR+A  +R  C   G GA    MNLF+R +RVVKSYANA++SSFEDPEKILEQ V+EMN DL KMRQATAQVLASQK+  NK KAA+Q+S+DWY++ Q   +K  +       +  +   A NA ALKTQ+DQQK VV+ LVS
Sbjct:    1 MALKASPVTGLFPPLRPTASSSPSTSSNRPCSLRILPLRTSFFGNSSGALRVNVLRLACDNRLRC--NGHGAT---MNLFERFSRVVKSYANALISSFEDPEKILEQTVIEMNSDLTKMRQATAQVLASQKQLQNKYKAAQQSSDDWYKRAQLALAKGDEDLAREALKRRK-SFADNATALKTQLDQQKGVVDNLVS 191          
BLAST of EY679234 vs. ExPASy Swiss-Prot
Match: IM30_ORYSJ (Probable membrane-associated 30 kDa protein, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0895100 PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.136e-36
Identity = 91/160 (56.88%), Postives = 111/160 (69.38%), Query Frame = 1
Query:  193 LTTSFFNGGVGALKVTRLRIAPSSRSYCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRWDNKCKAAEQASEDWYRKTQPCSSKRGKRSGT*GFQETQILIAKNAKALKTQIDQQKKVVNTLVS 672
            L TSF NG V +L++ ++R +  +R  C          R NL DR +RVVKSYANA+LSSFEDPEKIL+QAVLEMNDDL KMRQATAQVLASQKR +NK KAAEQAS+DWYR+ Q  + ++G         + +   A NA +LK Q+DQQK VV  LVS
Sbjct:   27 LRTSFLNGSV-SLRLIQVRQSNVNRFKCN-------GIRSNLLDRFSRVVKSYANAVLSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENKYKAAEQASDDWYRRAQ-LALQKGDEDLAREALKRRKSYADNASSLKAQLDQQKGVVENLVS 177          
BLAST of EY679234 vs. ExPASy Swiss-Prot
Match: Y617_SYNY3 (Uncharacterized protein sll0617 OS=Synechocystis sp. (strain PCC 6803) GN=sll0617 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.304e-13
Identity = 42/119 (35.29%), Postives = 70/119 (58.82%), Query Frame = 1
Query:  310 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRWDNKCKAAEQASEDWYRKTQPCSSKRGKRSGT*GFQETQILIAKNAKALKTQIDQQKKVVNTL 666
            M LFDRL RVV++  N ++S  EDPEK+LEQAV++M +DLV++RQA A+ +A +KR + +     Q ++ W  + +  +   G+ +        +  +   A A +TQ+ QQ+ +   L
Sbjct:    1 MGLFDRLGRVVRANLNDLVSKAEDPEKVLEQAVIDMQEDLVQLRQAVARTIAEEKRTEQRLNQDTQEAKKWEDRAK-LALTNGEENLAREALARKKSLTDTAAAYQTQLAQQRTMSENL 118          
The following BLAST results are available for this feature:
BLAST of EY679234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
IM30_PEA2.363e-4253.54Membrane-associated 30 kDa protein, chloroplastic ... [more]
IM30_ARATH2.000e-4151.78Probable membrane-associated 30 kDa protein, chlor... [more]
IM30_ORYSJ1.136e-3656.88Probable membrane-associated 30 kDa protein, chlor... [more]
Y617_SYNY32.304e-1335.29Uncharacterized protein sll0617 OS=Synechocystis s... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-056-H09-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679234 ID=EY679234; Name=EY679234; organism=Citrus sinensis; type=EST; length=957bp
AATTTCTCGTCTTCTATCCACCTTTCTCTGAAAACCAATCGTTCTGTTTC
CTGACAATAATTGAACTTGTGGGCATCCCGCAGAATGGCCGCAAAGTCAC
AGATAGTTACGGGATTCACCATGCCCATGACACCAGCGCCGTCCTCTTCT
TCCTCGAGCTCTAGCAGCAGTCTCTGCATGGTCAAGAAGCCCCTCACGAC
GTCGTTTTTCAACGGCGGAGTGGGAGCTCTAAAAGTTACAAGGTTAAGGA
TTGCTCCTTCCAGCCGATCCTATTGTTATAGACAAGGTGGAGGAGCACTT
AATACACGAATGAACCTATTTGATAGGTTAGCAAGAGTTGTGAAGTCCTA
TGCAAATGCAATTCTGAGTTCCTTTGAAGATCCAGAGAAGATTTTAGAGC
AAGCAGTACTTGAAATGAATGATGACTTGGTAAAGATGCGCCAGGCCACG
GCACAAGTGTTGGCATCTCAGAAGCGGTGGGATAATAAGTGCAAAGCTGC
AGAGCAAGCTTCCGAAGACTGGTATCGCAAAACACAGCCTTGCTCTTCAA
AAAGGGGAAAAAGATCTGGCACGTGAGGCTTTCAAGAAACGCAAATCCTT
ATTGCAAAAAATGCTAAGGCTTTGAAAACTCAAATTGATCAACAAAAGAA
GGTTGTTAATACCTTGGTTTCCAAAAATCCGGGTTTGGAAAGGAAAAAAC
GGGAGGGCAAATTAAAAAAAAAAACCTTTGAAAGCAGGGGGTCTCTCTGG
CAAGAAAGGCAACAAAAGGGAGGAAAAGGTGGGGGGAAAGGAAACCCTTA
TTCCGGGTTTTTTTCCTTTTTTTGAAAAAAGAAGGGAAAAAAAAAGGTGT
TTGAACTAGGGGAATCCCCACTTCAAAAATTTTCCCTTTATTCCACGTTA
TAACATTACCCCCTTGAAATATTTTATTAAAGAAAGAAATTTTTTTGGCT
CCATCAT
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