EY744628

Overview
NameEY744628
Unique NameEY744628
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length901
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7030 contig Csv1_Contig7030:1..895. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY744628 vs. ExPASy Swiss-Prot
Match: ATP5H_ARATH (ATP synthase subunit d, mitochondrial OS=Arabidopsis thaliana GN=At3g52300 PE=1 SV=3)

HSP 1 Score: 268.085 bits (684), Expect = 4.936e-71
Identity = 128/168 (76.19%), Postives = 146/168 (86.90%), Query Frame = 1 
Query:  103 MSGAGKKIADVAFKAGRTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPIDWEYYRKGIGSRLVDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAXXXXXXXXXXXXXXIAEVRELKEKISTMTAEEYFEKHPELKKKFDDEIRNDYWGY 606
            MSGAGKKIADVAFKA RTIDW+GMAK+LV+DEAR+EF+ LRRAFDEVN+ LQTKFSQEPEPIDW+YYRKGIG+ +VD YK+AY+SIE+PKYVDKVTPEYK KFDALLVELKEA              IA+V+E+ +K+STMTA+EYFEKHPELKKKFDDEIRND WGY
Sbjct:    1 MSGAGKKIADVAFKASRTIDWDGMAKVLVTDEARREFSNLRRAFDEVNTQLQTKFSQEPEPIDWDYYRKGIGAGIVDKYKEAYDSIEIPKYVDKVTPEYKPKFDALLVELKEAEQKSLKESERLEKEIADVQEISKKLSTMTADEYFEKHPELKKKFDDEIRNDNWGY 168
The following BLAST results are available for this feature:
BLAST of EY744628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ATP5H_ARATH4.936e-7176.19ATP synthase subunit d, mitochondrial OS=Arabidops... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C5-003-002-G02-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744628 ID=EY744628; Name=EY744628; organism=Citrus sinensis; type=EST; length=901bp
TTGTTTTGATACCCTCAGAAAACACAAAAGCTTGTTGTTTCGGAGCTGAG
AAAATCAAAAAATTAAGAGAAAAGAAAAAGGGAAAATCAGTCGAGAGAGA
AAATGAGCGGAGCTGGCAAGAAAATAGCTGACGTCGCATTCAAGGCCGGA
AGGACCATAGATTGGGAAGGGATGGCGAAGATGCTGGTCTCCGATGAGGC
GCGCAAGGAGTTCGCCACTCTCCGTCGCGCTTTCGACGAAGTCAACTCCA
CTCTTCAGACCAAGTTCAGCCAGGAACCTGAACCTATTGACTGGGAGTAT
TACAGAAAAGGAATTGGCTCTCGCTTGGTGGACATGTACAAACAGGCTTA
TGAAAGCATAGAGGTCCCAAAGTATGTAGACAAAGTCACCCCTGAATACA
AATCTAAGTTTGATGCTTTGCTGGTGGAATTGAAAGAAGCAGAAGGGAAA
TCTCTTAAGGAGTCCGAGCGTTTGGAGAAAGAAATAGCTGAGGTTCGAGA
ACTGAAGGAAAAGATCAGCACCATGACCGCTGAGGAATACTTTGAAAAGC
ATCCGGAACTCAAAAAGAAGTTCGATGATGAAATCAGGAATGACTACTGG
GGCTATTGATCACACATTTGCTCAATTTAGCAGCTGCATTTCCTAGCTCG
GCCAAGATTTTCTGAAGTGGCCCTGTTTTCCCCGCTGGTTAAATAATAAT
GATCATCCAAATTGGTTTTTGCATAACCCGGTTGGCTCTGGGGTTCAAAA
ATTTGAGCTTTTGATCCCATTCTATGCCAAAACTTTCAGTTTTCCGGGGC
AATGGGTTCATTTTTAACTTTTTAAGAGGCCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGGGCCGC
C
back to top