EY679222

Overview
NameEY679222
Unique NameEY679222
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1018
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY679222 vs. ExPASy Swiss-Prot
Match: RLMN_SYNJB (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. GN=rlmN PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.617e-15
Identity = 31/58 (53.45%), Postives = 39/58 (67.24%), Query Frame = 2 
Query:   50 GGSEPIPLLASYKLQSTLAIPLHAPNQKLRESIVPSAKSYPLEAILKDCRDYFLDTSR 223
            G    I  LA   LQ TLA+ LHAPNQ LR+ ++PSA  YPL+ +++DCRDY L T R
Sbjct:  193 GVPRQIAWLAQQDLQVTLAVSLHAPNQDLRQRLIPSASHYPLDTLIQDCRDYMLRTGR 250

HSP 2 Score: 28.1054 bits (61), Expect = 5.617e-15
Identity = 14/30 (46.67%), Postives = 18/30 (60.00%), Query Frame = 1 
Query:  289 LLSYLHDRGNGLQVNLIPFHPIE*SDSRRP 378
            LL      G  L VNLIP++PI  +D +RP
Sbjct:  275 LLQQASRSGVQLHVNLIPYNPISEADYQRP 304

HSP 3 Score: 26.9498 bits (58), Expect = 5.617e-15
Identity = 12/25 (48.00%), Postives = 17/25 (68.00%), Query Frame = 3 
Query:  225 RASFEHALIAAITDTI*HAVELAQL 299
            R SFE+ L++ + D   HA +LAQL
Sbjct:  251 RVSFEYTLLSGVNDLPIHARQLAQL 275
[Close]
BLAST of EY679222 vs. ExPASy Swiss-Prot
Match: RLMN_GLOVI (Ribosomal RNA large subunit methyltransferase N OS=Gloeobacter violaceus GN=rlmN PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 7.275e-15
Identity = 37/74 (50.00%), Postives = 48/74 (64.86%), Query Frame = 2 
Query:    2 GNRQVRVRNPGSTTRPGGSEPIPLLASYKLQSTLAIPLHAPNQKLRESIVPSAKSYPLEAILKDCRDYFLDTSR 223
            G RQ+ V   G    PG    I  L +YKLQ TLA+ LHAPNQ LR  ++P+A+ YP+E +L+DCRDY   T+R
Sbjct:  180 GQRQITVSTVGV---PG---QIRRLGTYKLQITLAVSLHAPNQDLRLKLIPTAQHYPIEELLEDCRDYVETTNR 247

HSP 2 Score: 26.5646 bits (57), Expect = 7.275e-15
Identity = 13/25 (52.00%), Postives = 16/25 (64.00%), Query Frame = 3 
Query:  225 RASFEHALIAAITDTI*HAVELAQL 299
            R SFE+ L+A I D   HA ELA +
Sbjct:  248 RVSFEYTLLAGINDEPHHARELAAI 272

HSP 3 Score: 25.7942 bits (55), Expect = 7.275e-15
Identity = 12/23 (52.17%), Postives = 15/23 (65.22%), Query Frame = 1 
Query:  310 RGNGLQVNLIPFHPIE*SDSRRP 378
            RG    VNLIP++PIE  +  RP
Sbjct:  274 RGFQSHVNLIPYNPIEGVEYERP 296
[Close]
BLAST of EY679222 vs. ExPASy Swiss-Prot
Match: RLMN_SYNJA (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. (strain JA-3-3Ab) GN=rlmN PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.741e-14
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 2 
Query:   50 GGSEPIPLLASYKLQSTLAIPLHAPNQKLRESIVPSAKSYPLEAILKDCRDYFLDTSR 223
            G    IP LA   LQ TLA+ LHAPNQ+LR+ ++PSA  YPL+A+++DCRDY L + R
Sbjct:  193 GVPRQIPWLAQQDLQITLAVSLHAPNQELRQQLIPSAAHYPLDALIQDCRDYMLCSGR 250

HSP 2 Score: 28.8758 bits (63), Expect = 4.741e-14
Identity = 14/31 (45.16%), Postives = 19/31 (61.29%), Query Frame = 1 
Query:  286 NLLSYLHDRGNGLQVNLIPFHPIE*SDSRRP 378
            +LL      G  L VNLIP++PI  +D +RP
Sbjct:  274 HLLRQASQAGARLHVNLIPYNPIAEADYQRP 304
[Close]
BLAST of EY679222 vs. ExPASy Swiss-Prot
Match: RLMN_THEEB (Ribosomal RNA large subunit methyltransferase N OS=Thermosynechococcus elongatus (strain BP-1) GN=rlmN PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 1.236e-13
Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 2 
Query:   50 GGSEPIPLLASYKLQSTLAIPLHAPNQKLRESIVPSAKSYPLEAILKDCRDYFLDTSR 223
            G  + I  LA ++LQ+TLA+ LHAPNQ LRE ++PSAK YPL  ++ DCR Y   T R
Sbjct:  188 GIPQQIQRLAQHQLQTTLAVSLHAPNQALREQLIPSAKHYPLSQLIADCRAYVQQTGR 245

HSP 2 Score: 26.9498 bits (58), Expect = 1.236e-13
Identity = 12/25 (48.00%), Postives = 17/25 (68.00%), Query Frame = 3 
Query:  225 RASFEHALIAAITDTI*HAVELAQL 299
            R +FE+ ++A + D   HA ELAQL
Sbjct:  246 RITFEYTVLAGVNDRPQHAEELAQL 270

HSP 3 Score: 23.483 bits (49), Expect = 1.236e-13
Identity = 11/23 (47.83%), Postives = 15/23 (65.22%), Query Frame = 1 
Query:  310 RGNGLQVNLIPFHPIE*SDSRRP 378
            RG    VNLIP++PI  +  +RP
Sbjct:  272 RGFQSHVNLIPYNPIAEAAYQRP 294
[Close]
BLAST of EY679222 vs. ExPASy Swiss-Prot
Match: RLMN_ACAM1 (Ribosomal RNA large subunit methyltransferase N OS=Acaryochloris marina (strain MBIC 11017) GN=rlmN PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 1.596e-13
Identity = 30/50 (60.00%), Postives = 37/50 (74.00%), Query Frame = 2 
Query:   74 LASYKLQSTLAIPLHAPNQKLRESIVPSAKSYPLEAILKDCRDYFLDTSR 223
            LA ++LQ TLA+ LHA NQ++R  +VPSAK YPLE +LKDCR Y   T R
Sbjct:  206 LAQHQLQITLAVSLHASNQRIRTQLVPSAKHYPLEKLLKDCRAYVTQTGR 255

HSP 2 Score: 27.335 bits (59), Expect = 1.596e-13
Identity = 13/25 (52.00%), Postives = 16/25 (64.00%), Query Frame = 1 
Query:  304 HDRGNGLQVNLIPFHPIE*SDSRRP 378
            H RG    VNLIP++PI   D +RP
Sbjct:  280 HLRGFQSHVNLIPYNPISEVDYQRP 304

HSP 3 Score: 24.2534 bits (51), Expect = 1.596e-13
Identity = 9/23 (39.13%), Postives = 16/23 (69.57%), Query Frame = 3 
Query:  225 RASFEHALIAAITDTI*HAVELA 293
            R +FE+ +++ + D   HA+ELA
Sbjct:  256 RVTFEYIVLSGVNDQTEHALELA 278
[Close]
BLAST of EY679222 vs. ExPASy Swiss-Prot
Match: RLMN_ANAVT (Ribosomal RNA large subunit methyltransferase N OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rlmN PE=3 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 3.447e-13
Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = 2 
Query:   50 GGSEPIPLLASYKLQSTLAIPLHAPNQKLRESIVPSAKSYPLEAILKDCRDYFLDTSR 223
            G  + I  LA + LQ TLA+ LHAPNQ LRE ++PSA+SY +E +L +CR+Y   T R
Sbjct:  207 GIRDRISQLAEHHLQVTLAVSLHAPNQALREQLIPSARSYHIEDLLAECREYVAITGR 264

HSP 2 Score: 27.335 bits (59), Expect = 3.447e-13
Identity = 13/25 (52.00%), Postives = 16/25 (64.00%), Query Frame = 1 
Query:  304 HDRGNGLQVNLIPFHPIE*SDSRRP 378
            H RG    VNLIP++PI   D +RP
Sbjct:  289 HLRGFQNHVNLIPYNPISEVDYKRP 313

HSP 3 Score: 25.7942 bits (55), Expect = 3.447e-13
Identity = 11/24 (45.83%), Postives = 17/24 (70.83%), Query Frame = 3 
Query:  225 RASFEHALIAAITDTI*HAVELAQ 296
            R SFE+ L+A + D   HA+EL++
Sbjct:  265 RISFEYILLAGVNDLPEHALELSK 288
[Close]
BLAST of EY679222 vs. ExPASy Swiss-Prot
Match: RLMN_NOSP7 (Ribosomal RNA large subunit methyltransferase N OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rlmN PE=3 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 5.754e-13
Identity = 34/74 (45.95%), Postives = 43/74 (58.11%), Query Frame = 2 
Query:    2 GNRQVRVRNPGSTTRPGGSEPIPLLASYKLQSTLAIPLHAPNQKLRESIVPSAKSYPLEAILKDCRDYFLDTSR 223
            G R + V   G   R      I   A   LQ TLA+ LHAPNQ LRE ++PSA++YPLE +L +CR+Y   T R
Sbjct:  207 GQRSLTVSTVGIRDR------IRQFAQNNLQITLAVSLHAPNQALREKLIPSARAYPLEELLAECREYVEITGR 274

HSP 2 Score: 26.9498 bits (58), Expect = 5.754e-13
Identity = 12/23 (52.17%), Postives = 16/23 (69.57%), Query Frame = 1 
Query:  310 RGNGLQVNLIPFHPIE*SDSRRP 378
            RG    VNLIP++PI+  D +RP
Sbjct:  301 RGFQSHVNLIPYNPIQEVDYKRP 323

HSP 3 Score: 25.409 bits (54), Expect = 5.754e-13
Identity = 10/24 (41.67%), Postives = 17/24 (70.83%), Query Frame = 3 
Query:  225 RASFEHALIAAITDTI*HAVELAQ 296
            R +FE+ L+A + D   HA+EL++
Sbjct:  275 RVTFEYVLLAGVNDLPEHALELSK 298
[Close]
BLAST of EY679222 vs. ExPASy Swiss-Prot
Match: RLMN_SYNY3 (Ribosomal RNA large subunit methyltransferase N OS=Synechocystis sp. (strain PCC 6803) GN=rlmN PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 5.767e-13
Identity = 29/50 (58.00%), Postives = 35/50 (70.00%), Query Frame = 2 
Query:   74 LASYKLQSTLAIPLHAPNQKLRESIVPSAKSYPLEAILKDCRDYFLDTSR 223
            LA   LQ T A+ LHAPNQ LR+S++PSA+ YPLE +L DCR Y   T R
Sbjct:  201 LADRHLQVTFAVSLHAPNQTLRQSLIPSARHYPLEQLLADCRAYVETTGR 250

HSP 2 Score: 26.9498 bits (58), Expect = 5.767e-13
Identity = 12/24 (50.00%), Postives = 16/24 (66.67%), Query Frame = 3 
Query:  225 RASFEHALIAAITDTI*HAVELAQ 296
            R +FE+ L+A + D   HA ELAQ
Sbjct:  251 RVTFEYVLLAGVNDQPVHAEELAQ 274

HSP 3 Score: 26.1794 bits (56), Expect = 5.767e-13
Identity = 12/23 (52.17%), Postives = 15/23 (65.22%), Query Frame = 1 
Query:  310 RGNGLQVNLIPFHPIE*SDSRRP 378
            RG    VNLIP++PI   D +RP
Sbjct:  277 RGFQTHVNLIPYNPISEVDYQRP 299
[Close]
BLAST of EY679222 vs. ExPASy Swiss-Prot
Match: RLMN_PROM4 (Ribosomal RNA large subunit methyltransferase N OS=Prochlorococcus marinus (strain MIT 9211) GN=rlmN PE=3 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 9.629e-13
Identity = 32/74 (43.24%), Postives = 42/74 (56.76%), Query Frame = 2 
Query:    2 GNRQVRVRNPGSTTRPGGSEPIPLLASYKLQSTLAIPLHAPNQKLRESIVPSAKSYPLEAILKDCRDYFLDTSR 223
            G R++ V   G          + L    ++Q TLA+ LHAPNQ LRE +VPSAK YP++ +L DCR Y   T R
Sbjct:  190 GQRRITVSTVGVVNTLPQLAELALAKLGRVQFTLALSLHAPNQHLREMLVPSAKVYPIQDLLSDCRHYLDITGR 263

HSP 2 Score: 29.6462 bits (65), Expect = 9.629e-13
Identity = 14/27 (51.85%), Postives = 18/27 (66.67%), Query Frame = 3 
Query:  225 RASFEHALIAAITDTI*HAVELAQLPS 305
            R SFE+ L+A + D + HA ELA L S
Sbjct:  264 RISFEYILLATVNDKVEHAEELADLIS 290

HSP 3 Score: 23.8682 bits (50), Expect = 9.629e-13
Identity = 14/30 (46.67%), Postives = 19/30 (63.33%), Query Frame = 1 
Query:  301 LHDRGNGLQ--VNLIPFHPIE*SDSRRPLL 384
            L D  +G Q  VNLI ++PI+  D +RP L
Sbjct:  285 LADLISGFQSHVNLIAYNPIDEEDYQRPSL 314
[Close]
BLAST of EY679222 vs. ExPASy Swiss-Prot
Match: RLMN_SYNP2 (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rlmN PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 1.247e-12
Identity = 32/58 (55.17%), Postives = 40/58 (68.97%), Query Frame = 2 
Query:   50 GGSEPIPLLASYKLQSTLAIPLHAPNQKLRESIVPSAKSYPLEAILKDCRDYFLDTSR 223
            G  + I  LA   LQ TLA+ LHAPNQ LRESI+P+A  YP+EA+L +CR+Y   T R
Sbjct:  191 GVPDQIRALAQQNLQITLAVSLHAPNQALRESIIPTAVHYPIEALLDECREYVAITRR 248

HSP 2 Score: 26.5646 bits (57), Expect = 1.247e-12
Identity = 12/24 (50.00%), Postives = 16/24 (66.67%), Query Frame = 3 
Query:  225 RASFEHALIAAITDTI*HAVELAQ 296
            R SFE+ L+A + D   HA ELA+
Sbjct:  249 RLSFEYILLAGVNDLPDHAAELAK 272

HSP 3 Score: 21.557 bits (44), Expect = 1.247e-12
Identity = 10/23 (43.48%), Postives = 14/23 (60.87%), Query Frame = 1 
Query:  310 RGNGLQVNLIPFHPIE*SDSRRP 378
            +G    VNLIP++PI     +RP
Sbjct:  275 KGFQSHVNLIPYNPITEVPFQRP 297
The following BLAST results are available for this feature:
BLAST of EY679222 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RLMN_SYNJB5.617e-1553.45Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_GLOVI7.275e-1550.00Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_SYNJA4.741e-1455.17Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_THEEB1.236e-1353.45Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_ACAM11.596e-1360.00Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_ANAVT3.447e-1351.72Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_NOSP75.754e-1345.95Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_SYNY35.767e-1358.00Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_PROM49.629e-1343.24Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_SYNP21.247e-1255.17Ribosomal RNA large subunit methyltransferase N OS... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-056-G02-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679222 ID=EY679222; Name=EY679222; organism=Citrus sinensis; type=EST; length=1018bp
GGGCAACCGGCAGGTACGGGTCCGGAATCCCGGGTCAACCACCCGTCCGG
GGGGTTCCGAACCCATCCCCCTTTTGGCCTCTTACAAACTTCAGTCTACA
TTGGCTATCCCCTTACATGCTCCAAACCAGAAACTGAGGGAATCAATTGT
GCCAAGTGCAAAGTCCTATCCTCTTGAAGCAATCCTGAAGGATTGCAGGG
ATTACTTCCTAGATACGAGTCGACCGGGCGTCCTTTGAGCATGCACTAAT
AGCTGCGATCACTGATACAATATAACATGCAGTAGAACTTGCTCAGCTAC
CTTCATGACCGAGGAAATGGTCTTCAAGTGAACCTCATACCCTTCCATCC
AATAGAATGATCTGATTCCCGACGTCCCTTACTCCAAGGCGGTGTAAACA
ATTGCAGGTGCTTTGGTATCCTATAAACTTACAACATTCCTTCCTCAGAT
CAGGTGAATGGGAGGCAACTGCCAACTCACGCCCACCTATCTTCCTGCTC
TCTAAACAACTCACTTGCCAAACTCAATCTCTTACAACATCTAGCTCTTG
AATCAAAAAAATGTTAGAACCATACTCAATGATACATGATCTATATCATT
CCTACGAATAAGTTTCCTATATCATCTCTTCCCTACCAGACTATCCAACT
TACTCTCTCCACCTCCTCATACAACTGTTAATGGCTGCATCCTATTTGAG
TCCACCGCAAATACTTCATACCATCCCAAAATACTTTGCTCTACTCACAC
AAACAATACGAATATCAATTCCATCACCCATTCATCCATGAGCCCATCAA
ACAAATTCCTATGGATATTTAAATCCGCCACCTCACACCGATTGAATAGT
CCTGTATCGACCATCTACTAGTCTTATCCTACCTCTCTTACGCACCTCTG
TTACTGGATTTCGGACTCACCTCCCTACTCACCGTCATCAGTACTGACTC
TTATTTATGTTTAAACTCCACATCACGATTCTCCGGTACCTTCACCCTCC
GCTCCCACTCATCCTCAT
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