EY679191 | Citrus Genome Database

Overview


Name	EY679191
Unique Name	EY679191
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	990

Libraries


Library Name	Type
Sweet orange leaf, infected with CiLV	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY679191 vs. ExPASy Swiss-Prot
Match: RH8_ARATH (DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis thaliana GN=RH8 PE=2 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 1.534e-72
Identity = 130/143 (90.91%), Postives = 135/143 (94.41%), Query Frame = 3

Query:   30 ITLKGITQYYAPFEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIYIQAVNGVINFDFPKNSETYLHKVGRSERFGHLGLTVNLIT*EDRFKL 458
            +TLKGITQ+YA  EERQK+HCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGI IQAVN VINFDFPKN+ETYLH+VGRS RFGHLGL VNLIT EDRF L
Sbjct:  338 LTLKGITQFYAFVEERQKIHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNL 480

HSP 2 Score: 28.1054 bits (61), Expect = 1.534e-72
Identity = 14/24 (58.33%), Postives = 16/24 (66.67%), Query Frame = 1

Query:  454 NLKRIEQEIGKESNKKPQLIDQRI 525
            NL RIEQE+G E  + P  IDQ I
Sbjct:  479 NLYRIEQELGTEIKQIPPHIDQAI 502

[Close]

BLAST of EY679191 vs. ExPASy Swiss-Prot
Match: RH8_ORYSJ (DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sativa subsp. japonica GN=Os02g0641800 PE=2 SV=2)

HSP 1 Score: 265.388 bits (677), Expect = 7.547e-72
Identity = 130/143 (90.91%), Postives = 134/143 (93.71%), Query Frame = 3

Query:   30 ITLKGITQYYAPFEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIYIQAVNGVINFDFPKNSETYLHKVGRSERFGHLGLTVNLIT*EDRFKL 458
            +TLKGITQ+YA  EERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGI IQAVN VINFDFPK +ETYLH+VGRS RFGHLGL VNLIT EDRF L
Sbjct:  341 LTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKTAETYLHRVGRSGRFGHLGLAVNLITYEDRFNL 483

HSP 2 Score: 27.7202 bits (60), Expect = 7.547e-72
Identity = 14/24 (58.33%), Postives = 15/24 (62.50%), Query Frame = 1

Query:  454 NLKRIEQEIGKESNKKPQLIDQRI 525
            NL RIEQE+G E    P  IDQ I
Sbjct:  482 NLYRIEQELGTEIKPIPPQIDQAI 505

[Close]

BLAST of EY679191 vs. ExPASy Swiss-Prot
Match: RH12_ORYSJ (DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sativa subsp. japonica GN=Os10g0503700 PE=2 SV=2)

HSP 1 Score: 268.085 bits (684), Expect = 9.841e-72
Identity = 132/143 (92.31%), Postives = 134/143 (93.71%), Query Frame = 3

Query:   30 ITLKGITQYYAPFEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIYIQAVNGVINFDFPKNSETYLHKVGRSERFGHLGLTVNLIT*EDRFKL 458
            +TLKGITQYYA  EERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGI IQAVN VINFDFPK SETYLH+VGRS RFGHLGL VNLIT EDRF L
Sbjct:  354 LTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKTSETYLHRVGRSGRFGHLGLAVNLITYEDRFNL 496

HSP 2 Score: 24.6386 bits (52), Expect = 9.841e-72
Identity = 12/21 (57.14%), Postives = 13/21 (61.90%), Query Frame = 1

Query:  454 NLKRIEQEIGKESNKKPQLID 516
            NL RIEQE+G E    P  ID
Sbjct:  495 NLYRIEQELGTEIKTIPPQID 515

[Close]

BLAST of EY679191 vs. ExPASy Swiss-Prot
Match: RH6_ORYSJ (DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sativa subsp. japonica GN=Os04g0533000 PE=2 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 1.674e-71
Identity = 130/143 (90.91%), Postives = 135/143 (94.41%), Query Frame = 3

Query:   30 ITLKGITQYYAPFEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIYIQAVNGVINFDFPKNSETYLHKVGRSERFGHLGLTVNLIT*EDRFKL 458
            +TLKGITQ+YA  EERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGI IQAVN VINFDFPK++ETYLH+VGRS RFGHLGL VNLIT EDRF L
Sbjct:  331 LTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKSAETYLHRVGRSGRFGHLGLAVNLITYEDRFNL 473

HSP 2 Score: 26.1794 bits (56), Expect = 1.674e-71
Identity = 13/24 (54.17%), Postives = 15/24 (62.50%), Query Frame = 1

Query:  454 NLKRIEQEIGKESNKKPQLIDQRI 525
            NL RIEQE+G E    P  ID+ I
Sbjct:  472 NLYRIEQELGTEIKPIPPQIDRAI 495

[Close]

BLAST of EY679191 vs. ExPASy Swiss-Prot
Match: RH6_ARATH (DEAD-box ATP-dependent RNA helicase 6 OS=Arabidopsis thaliana GN=RH6 PE=2 SV=2)

HSP 1 Score: 262.307 bits (669), Expect = 2.598e-69
Identity = 126/143 (88.11%), Postives = 134/143 (93.71%), Query Frame = 3

Query:   30 ITLKGITQYYAPFEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIYIQAVNGVINFDFPKNSETYLHKVGRSERFGHLGLTVNLIT*EDRFKL 458
            +TL G+TQYYA  EERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKM+QDHRNRVFHDFRNGACRNLVCTDLFTRGI IQAVN VINFDFP+ SE+YLH+VGRS RFGHLGL VNL+T EDRFK+
Sbjct:  361 LTLMGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKM 503

HSP 2 Score: 22.3274 bits (46), Expect = 2.598e-69
Identity = 10/19 (52.63%), Postives = 12/19 (63.16%), Query Frame = 1

Query:  469 EQEIGKESNKKPQLIDQRI 525
            EQE+G E    P LID+ I
Sbjct:  507 EQELGTEIKPIPSLIDKAI 525

[Close]

BLAST of EY679191 vs. ExPASy Swiss-Prot
Match: RH12_ARATH (DEAD-box ATP-dependent RNA helicase 12 OS=Arabidopsis thaliana GN=RH12 PE=2 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 9.042e-69
Identity = 125/143 (87.41%), Postives = 134/143 (93.71%), Query Frame = 3

Query:   30 ITLKGITQYYAPFEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIYIQAVNGVINFDFPKNSETYLHKVGRSERFGHLGLTVNLIT*EDRFKL 458
            +TL G+TQYYA  EERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKM+QDHRNRVFH+FRNGACRNLVCTDLFTRGI IQAVN VINFDFP+ SE+YLH+VGRS RFGHLGL VNL+T EDRFK+
Sbjct:  331 LTLMGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKM 473

[Close]

BLAST of EY679191 vs. ExPASy Swiss-Prot
Match: DHH1_ASPNC (ATP-dependent RNA helicase dhh1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dhh1 PE=3 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 6.286e-68
Identity = 121/145 (83.45%), Postives = 130/145 (89.66%), Query Frame = 3

Query:   30 ITLKGITQYYAPFEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIYIQAVNGVINFDFPKNSETYLHKVGRSERFGHLGLTVNLIT*EDRFKLEK 464
            +TL+GITQYYA  EE+QKVHCLNTLFSKLQINQSIIFCNS NRVELLAKKITELGYSCFY HA+MLQ HRNRVFHDFRNG CRNLVC+DL TRGI IQAVN VINFDFPKN+ETYLH++GRS RFGHLGL +NLI  EDRF L K
Sbjct:  254 LTLRGITQYYAFVEEKQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRFNLYK 398

HSP 2 Score: 27.335 bits (59), Expect = 6.286e-68
Identity = 12/24 (50.00%), Postives = 17/24 (70.83%), Query Frame = 1

Query:  454 NLKRIEQEIGKESNKKPQLIDQRI 525
            NL +IEQE+G E    PQ ID+++
Sbjct:  395 NLYKIEQELGTEIQPIPQNIDKKL 418

[Close]

BLAST of EY679191 vs. ExPASy Swiss-Prot
Match: DHH1_ASPCL (ATP-dependent RNA helicase dhh1 OS=Aspergillus clavatus GN=dhh1 PE=3 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 6.287e-68
Identity = 121/145 (83.45%), Postives = 130/145 (89.66%), Query Frame = 3

Query:   30 ITLKGITQYYAPFEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIYIQAVNGVINFDFPKNSETYLHKVGRSERFGHLGLTVNLIT*EDRFKLEK 464
            +TL+GITQYYA  EE+QKVHCLNTLFSKLQINQSIIFCNS NRVELLAKKITELGYSCFY HA+MLQ HRNRVFHDFRNG CRNLVC+DL TRGI IQAVN VINFDFPKN+ETYLH++GRS RFGHLGL +NLI  EDRF L K
Sbjct:  254 LTLRGITQYYAFVEEKQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRFNLYK 398

HSP 2 Score: 27.335 bits (59), Expect = 6.287e-68
Identity = 12/24 (50.00%), Postives = 17/24 (70.83%), Query Frame = 1

Query:  454 NLKRIEQEIGKESNKKPQLIDQRI 525
            NL +IEQE+G E    PQ ID+++
Sbjct:  395 NLYKIEQELGTEIQPIPQNIDKKL 418

[Close]

BLAST of EY679191 vs. ExPASy Swiss-Prot
Match: DHH1_ASPOR (ATP-dependent RNA helicase dhh1 OS=Aspergillus oryzae GN=dhh1 PE=3 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 1.394e-67
Identity = 120/145 (82.76%), Postives = 130/145 (89.66%), Query Frame = 3

Query:   30 ITLKGITQYYAPFEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIYIQAVNGVINFDFPKNSETYLHKVGRSERFGHLGLTVNLIT*EDRFKLEK 464
            +TL+GITQYYA  EE+QKVHCLNTLFSKLQINQSIIFCNS NRVELLAKKITELGYSCFY HA+MLQ HRNRVFHDFRNG CRNLVC+DL TRGI IQAVN VINFDFPKN+ETYLH++GRS RFGHLGL +NLI  +DRF L K
Sbjct:  254 LTLRGITQYYAFVEEKQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRFNLYK 398

HSP 2 Score: 27.335 bits (59), Expect = 1.394e-67
Identity = 12/24 (50.00%), Postives = 17/24 (70.83%), Query Frame = 1

Query:  454 NLKRIEQEIGKESNKKPQLIDQRI 525
            NL +IEQE+G E    PQ ID+++
Sbjct:  395 NLYKIEQELGTEIQPIPQNIDKKL 418

[Close]

BLAST of EY679191 vs. ExPASy Swiss-Prot
Match: DHH1_NEOFI (ATP-dependent RNA helicase dhh1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dhh1 PE=3 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 1.394e-67
Identity = 120/145 (82.76%), Postives = 130/145 (89.66%), Query Frame = 3

Query:   30 ITLKGITQYYAPFEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIYIQAVNGVINFDFPKNSETYLHKVGRSERFGHLGLTVNLIT*EDRFKLEK 464
            +TL+GITQYYA  EE+QKVHCLNTLFSKLQINQSIIFCNS NRVELLAKKITELGYSCFY HA+MLQ HRNRVFHDFRNG CRNLVC+DL TRGI IQAVN VINFDFPKN+ETYLH++GRS RFGHLGL +NLI  +DRF L K
Sbjct:  254 LTLRGITQYYAFVEEKQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRFNLYK 398

HSP 2 Score: 27.335 bits (59), Expect = 1.394e-67
Identity = 12/24 (50.00%), Postives = 17/24 (70.83%), Query Frame = 1

Query:  454 NLKRIEQEIGKESNKKPQLIDQRI 525
            NL +IEQE+G E    PQ ID+++
Sbjct:  395 NLYKIEQELGTEIQPIPQNIDKKL 418

The following BLAST results are available for this feature:

BLAST of EY679191 vs. ExPASy Swiss-Prot

BLAST of EY679191 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
RH8_ARATH	1.534e-72	90.91	DEAD-box ATP-dependent RNA helicase 8 OS=Arabidops...	[more]
RH8_ORYSJ	7.547e-72	90.91	DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sat...	[more]
RH12_ORYSJ	9.841e-72	92.31	DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sa...	[more]
RH6_ORYSJ	1.674e-71	90.91	DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sat...	[more]
RH6_ARATH	2.598e-69	88.11	DEAD-box ATP-dependent RNA helicase 6 OS=Arabidops...	[more]
RH12_ARATH	9.042e-69	87.41	DEAD-box ATP-dependent RNA helicase 12 OS=Arabidop...	[more]
DHH1_ASPNC	6.286e-68	83.45	ATP-dependent RNA helicase dhh1 OS=Aspergillus nig...	[more]
DHH1_ASPCL	6.287e-68	83.45	ATP-dependent RNA helicase dhh1 OS=Aspergillus cla...	[more]
DHH1_ASPOR	1.394e-67	82.76	ATP-dependent RNA helicase dhh1 OS=Aspergillus ory...	[more]
DHH1_NEOFI	1.394e-67	82.76	ATP-dependent RNA helicase dhh1 OS=Neosartorya fis...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C1-401-056-D03-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY679191 ID=EY679191; Name=EY679191; organism=Citrus sinensis; type=EST; length=990bp
ACCATATGTTATTAATCTGACCCTTTTAGATTACTCTCAAGGGAATTACC
CAATACTATGCTCCTTTTGAAGAAAGGCAGAAAGTCCACTGCCTCAACAC
ACTTTTCTCTAAGTTGCAAATTAATCAATCTATCATTTTCTGCAATTCGG
TGAATCGGGTTGAACTCCTTGCCAAGAAAATTACAGAACTTGGGTACTCT
TGTTTTTATATCCATGCAAAGATGCTGCAAGACCATCGCAACAGAGTATT
TCATGACTTCCGCAATGGTGCATGCAGGAATCTTGTTTGTACTGACCTAT
TTACGAGGGGTATATACATTCAAGCAGTGAATGGAGTCATTAACTTTGAT
TTTCCTAAGAACTCTGAGACATATCTGCACAAAGTTGGGCGATCTGAAAG
GTTTGGACACCTTGGATTAACTGTAAATTTGATTACTTAAGAAGACCGCT
TCAAACTTGAAAAGGATTGAACAAGAAATCGGGAAAGAATCTAACAAAAA
ACCTCAGCTAATTGATCAGAGAATTAACAGAAGGAGATTAATGGGCCGGT
AGCTCGCTAGATATACCATGGTAGGTAGCTAGAGGATTCCTGAAAGCAGG
TGAATATAAGGCTCTGGTTCCAACAGCTAAAGGATAAATTTATTTAATAT
GTCTTATGTAGGTTATGAGGAAAAATATGCAACTTGGAGTTGCTCATATT
TAACCTTTTTAAACTATTATCCTTCCATGGGTTTCGGGTAATTTCTAAAG
TACATAAACTATAATTAAGAGCAAAGTCATAGAAGATTATTAAACACAAT
ATCGAAAAATCCCCCACAATCTAACAACGAGGGAAAGCCAATACCTACAA
CTTAAACGCTTTATATGTCACAGATGAAATTCAACTAGTGTTTCTATTGA
AAAATATTACAACCACCATACTATATTTTAATTAAATTAATAATATTATT
CAATTAGCACGATCAAATATTTATGAAAAGGATGTATTAG