EY679190

Overview
NameEY679190
Unique NameEY679190
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length981
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY679190 vs. ExPASy Swiss-Prot
Match: XTH7_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 7 OS=Arabidopsis thaliana GN=XTH7 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 5.311e-13
Identity = 41/100 (41.00%), Postives = 57/100 (57.00%), Query Frame = 2 
Query:   98 AIALFAMLYCLVSCSCVLGRPATFLEDFKVTWTDARLHAI*GGRAIHLVLLPYS*CGYASQSHYLLRPANTKITLFLGHPAAPLPAFYMNFNTSTCNKKI 397
            ++ LFA LY       V+ RPA F +DF++ W+D  +  I GGRAI L L P S CG+AS+  YL    + KI L  G  A  + AFYMN +T +   ++
Sbjct:   16 SLCLFAALY-----QPVMSRPAKFEDDFRIAWSDTHITQIDGGRAIQLKLDPSSGCGFASKKQYLFGRVSMKIKLIPGDSAGTVTAFYMNSDTDSVRDEL 110
[Close]
BLAST of EY679190 vs. ExPASy Swiss-Prot
Match: XTH6_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 6 OS=Arabidopsis thaliana GN=XTH6 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.914e-11
Identity = 35/84 (41.67%), Postives = 51/84 (60.71%), Query Frame = 2 
Query:  146 VLGRPATFLEDFKVTWTDARLHAI*GGRAIHLVLLPYS*CGYASQSHYLLRPANTKITLFLGHPAAPLPAFYMNFNTSTCNKKI 397
            V  RPATF+EDFK  W+++ +  +  G+AI LVL   + CG+AS+  YL    + KI L  G  A  + AFYMN +T+T   ++
Sbjct:   28 VSARPATFVEDFKAAWSESHIRQMEDGKAIQLVLDQSTGCGFASKRKYLFGRVSMKIKLIPGDSAGTVTAFYMNSDTATVRDEL 111
The following BLAST results are available for this feature:
BLAST of EY679190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
XTH7_ARATH5.311e-1341.00Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH6_ARATH2.914e-1141.67Probable xyloglucan endotransglucosylase/hydrolase... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-056-D02-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679190 ID=EY679190; Name=EY679190; organism=Citrus sinensis; type=EST; length=981bp
CATAACCACAACATATAATTCCCCTATTTCTTTCTATTAATAACAGATAA
TATTTTATTGTACCGCTTGTTTTACAGCTATGGCTATCCTAAGACATGCA
ATAGCATTATTTGCGATGCTTTACTGTCTTGTATCCTGCTCTTGCGTTTT
AGGGCGACCGGCTACTTTTCTTGAGGATTTTAAAGTCACATGGACCGACG
CCCGTCTTCATGCAATCTAGGGAGGGAGGGCCATCCATCTAGTTCTACTA
CCATATTCATGATGTGGGTATGCCTCCCAATCGCACTACTTGCTCCGCCC
TGCAAATACCAAGATCACGCTCTTTCTCGGACACCCTGCAGCACCTCTCC
CCGCATTTTATATGAATTTCAACACCTCAACATGTAACAAAAAAATCTTG
ATTCCTTGGTCCTGGGACATCGCACTCATCCCCCTCACATGGCTCATGAC
CTACATCTAGCCCTACCGGACCTGGCTACACACAACGTCGATGCAACCCC
TTTGTTCCGCCTTTCTCGTCCATTAAAATCTTCTCACCTCTCCTCATCAA
CCTTCACTTCTCTCCCTCCTCTTACTACAGAACACCTAAACAATATACAC
ATAATCTCATCACGGGCTCCTTATGCTATAACATCACCCCCTGTTACGTA
TATTCCACCCTCTCATGCCCAGACCTGACTCCTCACGATACCTGACGCCT
CTTCGCCTACCATTATCTCTATCTCCTTCACCCCCTTTGCTGCTCGTCGT
GCGTCTCTCTGGAATCTGCTGCGTTCGCATCGTTCTTGCTACGCTTCGAT
ACTCTCCATGTACCATATGATTTTGTCCGGTGATTTTATCATAAATAGAC
TTCACCCCCCGACTGGTAGATTGGCTCCTCCTTTGACTGCCATATCACTT
ACTCAGTGCTACGTCTCGTTATATCTGACCCTATCTACTGAATATTACCT
CCTCTCCCGGCACGGATAATCTCTCTTTGTT
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