EY679177

Overview
NameEY679177
Unique NameEY679177
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1067
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY679177 vs. ExPASy Swiss-Prot
Match: FECI_ECOLI (Probable RNA polymerase sigma factor fecI OS=Escherichia coli (strain K12) GN=fecI PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 4.298e-11
Identity = 36/114 (31.58%), Postives = 59/114 (51.75%), Query Frame = 3 
Query:  240 LYHAHHSWLRGWLSRRTGCREHAADLAQETFVRLLNARKQQALLQPRAYLSSIARSLMIDQXXXXXXXXXXXXXXXHFPEVKVPSE*TRLLILDSRERIDRLVDQLKPRVREAF 581
            LY  HH WL+ WL+R+      A D+AQ+TF+R++ +     +  PR++L +IA+ +M+D                  PE   PS   R   L++ + +D ++D L  + REAF
Sbjct:   16 LYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAF 129
The following BLAST results are available for this feature:
BLAST of EY679177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FECI_ECOLI4.298e-1131.58Probable RNA polymerase sigma factor fecI OS=Esche... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-056-B10-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679177 ID=EY679177; Name=EY679177; organism=Citrus sinensis; type=EST; length=1067bp
AACCGCAGTACGGTCGGGATTCCCGGGTCGACCGCTCGATTGAGTGTTTG
CACCTGCGCAAGGCCTTTTCGCAACCCCGTCAAGCCTGTGTGGGTTTGTG
CATCCCGCCAAATCCACACGGCAACGATTGCCCAATCCTCTGGCCAGCGC
ATAGAATGCGAACCGTTATCAATTAAGACGCCCGCGCCAGGATGCCCATG
TCGAGCGACCACCCACTGGACCATGCCGCCATCGGCCAGCTCTACCATGC
CCATCATTCCTGGCTGCGCGGCTGGTTGAGCCGGCGTACGGGCTGCCGTG
AGCACGCCGCCGACCTGGCGCAGGAAACCTTCGTGCGCCTGCTCAATGCG
CGCAAGCAGCAAGCCTTGCTGCAACCCCGCGCCTACCTGAGCAGCATCGC
CCGCAGCCTGATGATCGACCAGTATCGCCGCCGCGAACTGGAGCGTGCCT
ATCTGGAGAGTCTCGCGCATTTCCCGGAAGTCAAGGTGCCGTCGGAATAA
ACCCGCCTGCTGATCCTCGACAGCCGGGAGCGGATCGACCGCCTGGTGGA
CCAACTCAAGCCCCGGGTGCGCGAAGCGTTTTTTGCTGGCGCAACTGGAA
GGCCTGAACCTGCCAACAAATCGCCCCTGCGCCGGGGGGTGGCCAAGGCC
CCCTTGGAAACGCGAACTGGTCCAAAGGCCTTGTCCGTCCTGTTATCGGT
TGCGTTTATGCCCAAAGGGTACTCCGCCCATTGGGGGAACCGGGAGAATC
AAGGTGGAATGAAATAAGCTGCGGTTTCCAATATTGCTTAAAAAACACCC
ACCCTATGGCTCGCCTTTCTAAAAGCCTGGCTTTGTAAACCTATGGGAGA
TAACCCAAACACGGGCTTGTGACAACCTGGCCCTCGTACCAAAAAAAGAA
AAATAAATTTTATAAAAACTTTTCACGTTACAAATAAGTTCACCCTCCCC
AAATAATTTTATTAAGAGGGGCGACATCTCCACTAAATCAAACTATATGT
ACCCTCCTACGTGAAAAAAAGGGCAATATAAGAAATGAATAATTATCTCG
TGGGGGGGGGTGTCATT
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