EY679176

Overview
NameEY679176
Unique NameEY679176
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length976
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY679176 vs. ExPASy Swiss-Prot
Match: Y5162_ARATH (Uncharacterized protein At5g41620 OS=Arabidopsis thaliana GN=At5g41620 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.600e-18
Identity = 51/141 (36.17%), Postives = 85/141 (60.28%), Query Frame = 3 
Query:   60 ESNGGVLDSVSNASL---MEVETRSRAQTPSGSTVGVKTRLKDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKTAWKNKEREVVGAAIESIAGELEVNRE 473
            + N   L  VS AS    +EV T ++A TPS S        ++    L TS ELLK++NR+W  E++  S++SL+ AL  E+  +R+++ +L++ Q++D+ E+  ++K  AEEK   KNKE E + +A++S+   LE  R+
Sbjct:   66 DRNNHALQPVSPASYGSSLEVTTYNKAVTPSSSLEFRGRPSREPHYNLKTSTELLKVLNRIWSLEEQHVSNISLIKALKTEVAHSRVRIKELLRYQQADRHELDSVVKQLAEEKLLSKNKEVERMSSAVQSVRKALEDERK 206

HSP 2 Score: 26.5646 bits (57), Expect = 2.600e-18
Identity = 13/23 (56.52%), Postives = 17/23 (73.91%), Query Frame = 2 
Query:  479 RKRFESLY*KLGKELTETKHSPS 547
            RKR ESL+ K+ +EL+E K S S
Sbjct:  208 RKRSESLHRKMARELSEVKSSLS 230
The following BLAST results are available for this feature:
BLAST of EY679176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5162_ARATH2.600e-1836.17Uncharacterized protein At5g41620 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-056-B09-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679176 ID=EY679176; Name=EY679176; organism=Citrus sinensis; type=EST; length=976bp
CAGGCACAGGGAGTCACCATACAAGATCATCATCCATTTCTCAGAGGCTT
AGGCTAACAGAAAGCAATGGGGGAGTTTTGGATTCTGTTAGTAATGCTAG
CTTAATGGAGGTAGAGACCAGATCCCGAGCACAGACTCCTAGTGGATCAA
CTGTCGGAGTTAAGACTCGTTTGAAGGATGTTAGTAATGCATTGACTACA
TCTAAAGAGCTTCTCAAGATCATTAATCGCATGTGGGGTCAAGAAGATCG
GCCTTCTTCGAGCATGTCTCTTGTCTCAGCCTTACATGCTGAGCTTGAGA
GGGCTCGCCTGCAAGTGAACCAACTTATCCAAGAACAGCGCTCAGACCAA
AGTGAGATCAGCTATCTAATGAAGTGTTTTGCTGAAGAAAAGACCGCATG
GAAAAACAAGGAGCGGGAAGTGGTTGGGGCTGCTATTGAATCTATTGCAG
GAGAACTTGAGGTAAATAGGGAAACTGAAGGAAAAGGTTTGAAAGCTTAT
ACTAGAAGCTCGGGAAAGAACTAACTGAGACTAAGCATTCCCCTTCTGAA
GGGGGGGAAGGATCTTGATACTGGAAAAAAAGCCTGAGTATTATTTGAAC
AAGTATGTGGATGGAGTTTAGCCCGGGGATATCATGGGAGATAAATTCTG
AAGGGGGAAAACCTATAAAAAGAGCCTGGCCTAATCTCTGTAAAAAGGTT
TAAAAAAGGAAAGGGAAATGTTCCCGGTATCTCGATTGTATTTTGGAGTG
AAAATAAATTTTCAAATTTAAACCCTCCGAAAGGCTAATTTACAATCTTG
GATAAAAAAAAAGGCTGGCCGTTTGATAATATTGAATAAACCCATGTTTT
GATTTTTTTCCCAAGTACTCCACTATTGCGTAAAAAAATAAAGGGTGCAC
CATTTCCTTGTTAACATTTCCCCCCTTCTCACCGTGGGGGTGACATTACT
GGTGGCTATTTTTATTATATGATATA
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