EY679165

Overview
NameEY679165
Unique NameEY679165
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679165 vs. ExPASy Swiss-Prot
Match: RB11A_LOTJA (Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.211e-34
Identity = 72/78 (92.31%), Postives = 74/78 (94.87%), Query Frame = 2
Query:  236 MASGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGPER 469
            MASGGGYGD N KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSK+TIGVEFQTRTLVI HK+VKAQIWDTAG ER
Sbjct:    1 MASGGGYGDANAKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHKTVKAQIWDTAGQER 78          
BLAST of EY679165 vs. ExPASy Swiss-Prot
Match: RB11C_TOBAC (Ras-related protein Rab11C OS=Nicotiana tabacum GN=RAB11C PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.301e-32
Identity = 69/73 (94.52%), Postives = 71/73 (97.26%), Query Frame = 2
Query:  251 GYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGPER 469
            GYGD +QKIDYVFKVVLIGDSAVGK+QILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAG ER
Sbjct:    4 GYGDASQKIDYVFKVVLIGDSAVGKTQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQER 76          
BLAST of EY679165 vs. ExPASy Swiss-Prot
Match: RB11D_TOBAC (Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.006e-32
Identity = 69/73 (94.52%), Postives = 70/73 (95.89%), Query Frame = 2
Query:  251 GYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGPER 469
            GYGD +QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTL IQHKSVKAQIWDTAG ER
Sbjct:    4 GYGDASQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLAIQHKSVKAQIWDTAGQER 76          
BLAST of EY679165 vs. ExPASy Swiss-Prot
Match: RGP1_ORYSJ (Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 6.929e-29
Identity = 63/75 (84.00%), Postives = 68/75 (90.67%), Query Frame = 2
Query:  245 GGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGPER 469
            GG YG+  QKIDYVFKVVLIGDSAVGKSQ+LARFARNEF+LDSKATIGVEFQTRTL I  ++VKAQIWDTAG ER
Sbjct:    5 GGSYGEVGQKIDYVFKVVLIGDSAVGKSQLLARFARNEFNLDSKATIGVEFQTRTLHIDARTVKAQIWDTAGQER 79          
BLAST of EY679165 vs. ExPASy Swiss-Prot
Match: RAA2A_ARATH (Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 8.204e-22
Identity = 48/69 (69.57%), Postives = 60/69 (86.96%), Query Frame = 2
Query:  263 PNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGPER 469
            P+++ DY+FKVVLIGDS VGKS +L+RF RNEF L+SK+TIGVEF TRTL ++ ++VKAQIWDTAG ER
Sbjct:    5 PDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTVKAQIWDTAGQER 73          
BLAST of EY679165 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.118e-21
Identity = 47/69 (68.12%), Postives = 58/69 (84.06%), Query Frame = 2
Query:  263 PNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGPER 469
            P+   DY+FKVVLIGDS VGKS +L+RF RNEFSL+SK+TIGVEF TR++ +  K++KAQIWDTAG ER
Sbjct:    5 PDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 73          
BLAST of EY679165 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.118e-21
Identity = 48/68 (70.59%), Postives = 58/68 (85.29%), Query Frame = 2
Query:  266 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGPER 469
            + + DY+FK+VLIGDS VGKS IL+RF RNEF L+SK+TIGVEF TRTL ++ K+VKAQIWDTAG ER
Sbjct:    6 DHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73          
BLAST of EY679165 vs. ExPASy Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.118e-21
Identity = 48/68 (70.59%), Postives = 58/68 (85.29%), Query Frame = 2
Query:  266 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGPER 469
            + + DY+FK+VLIGDS VGKS IL+RF RNEF L+SK+TIGVEF TRTL ++ K+VKAQIWDTAG ER
Sbjct:    6 DHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73          
BLAST of EY679165 vs. ExPASy Swiss-Prot
Match: RAA2C_ARATH (Ras-related protein RABA2c OS=Arabidopsis thaliana GN=RABA2C PE=2 SV=4)

HSP 1 Score: 100.908 bits (250), Expect = 4.072e-21
Identity = 47/68 (69.12%), Postives = 58/68 (85.29%), Query Frame = 2
Query:  266 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGPER 469
            +Q+ DY+FK+VLIGDS VGKS IL+RF RNEF L+SK+TIGVEF TRT  ++ K++KAQIWDTAG ER
Sbjct:    6 DQEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTTQVEGKTIKAQIWDTAGQER 73          
BLAST of EY679165 vs. ExPASy Swiss-Prot
Match: RB11A_TOBAC (Ras-related protein Rab11A OS=Nicotiana tabacum GN=RAB11A PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.318e-21
Identity = 48/68 (70.59%), Postives = 58/68 (85.29%), Query Frame = 2
Query:  266 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGPER 469
            + + DY+FK+VLIGDS VGKS IL+RF RNEF L+SK+TIGVEF TRTL ++ K+VKAQIWDTAG ER
Sbjct:    6 DHEYDYLFKMVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73          
The following BLAST results are available for this feature:
BLAST of EY679165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 189
Match NameE-valueIdentityDescription
RB11A_LOTJA3.211e-3492.31Ras-related protein Rab11A OS=Lotus japonicus GN=R... [more]
RB11C_TOBAC2.301e-3294.52Ras-related protein Rab11C OS=Nicotiana tabacum GN... [more]
RB11D_TOBAC3.006e-3294.52Ras-related protein Rab11D OS=Nicotiana tabacum GN... [more]
RGP1_ORYSJ6.929e-2984.00Ras-related protein RGP1 OS=Oryza sativa subsp. ja... [more]
RAA2A_ARATH8.204e-2269.57Ras-related protein RABA2a OS=Arabidopsis thaliana... [more]
YPTC6_CHLRE3.118e-2168.12Ras-related protein YPTC6 OS=Chlamydomonas reinhar... [more]
RB2BV_BETVU3.118e-2170.59Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]
RB11C_LOTJA3.118e-2170.59Ras-related protein Rab11C OS=Lotus japonicus GN=R... [more]
RAA2C_ARATH4.072e-2169.12Ras-related protein RABA2c OS=Arabidopsis thaliana... [more]
RB11A_TOBAC5.318e-2170.59Ras-related protein Rab11A OS=Nicotiana tabacum GN... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-056-A07-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679165 ID=EY679165; Name=EY679165; organism=Citrus sinensis; type=EST; length=541bp
AGCTCACCCGAGACATACGCTCTTTTAAAGCCATCATCCTTACAGACACC
GCAACTTTACGCCATTAGTTTATGATTTCGTTTCTGCAACTGGTGGAACC
CACCCTTTTCACTGTTACCCATCAGTCATACTTCATATTTTCATCCCACC
CAACAAATTAAACTTGTTCAAATATTGTGATTTGTGAAGTTGGTCGGTCT
TGGTAAGCTCGATCTCTTACTAACTCTCAGTAGAAATGGCCAGCGGAGGA
GGCTATGGAGATCCCAATCAGAAAATTGATTACGTATTCAAAGTTGTTTT
AATCGGAGACTCCGCCGTCGGCAAGTCTCAGATACTGGCAAGGTTTGCTC
GAAACGAGTTCAGTTTGGACTCTAAAGCCACCATTGGAGTTGAGTTTCAA
ACTAGGACTTTAGTTATTCAACATAAAAGCGTCAAGGCACAGATCTGGGA
CACTGCTGGCCCAGAACGGTGCCTTTTTTTTTTTTCACTTCTCAATTCTT
CTTCTTTTACGTGTGTAAAAACTTCTGATCTGATTGTTTTC
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