EY744602

Overview
NameEY744602
Unique NameEY744602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length983
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY744602_ssr11 microsatellite EY744602_ssr11:11..20. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY744602 vs. ExPASy Swiss-Prot
Match: R13A4_ARATH (60S ribosomal protein L13a-4 OS=Arabidopsis thaliana GN=RPL13AD PE=2 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 4.132e-90
Identity = 163/200 (81.50%), Postives = 175/200 (87.50%), Query Frame = 3
Query:   33 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLESEVGWNYYDTIRELEKSRQERSQVAYERKKQLHKLRAKAEKGAKKKLVSQLYI 632
            MVSGSGIC+KRVVVDARHHMLGRLASI AKELLNGQKVV VRCEEIC+SGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAP+KIFWRTVRGMIPHKT            YEGVP PYDK+KRMVIPDALKVLRLQ GHKYCLLGRL SEVGWN+YDTI+ELE  R+ER+ V YERKKQL+KLR KAEK A++KL +QL I
Sbjct:    1 MVSGSGICSKRVVVDARHHMLGRLASITAKELLNGQKVVIVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVYEGVPTPYDKIKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELETKRKERAHVVYERKKQLNKLRVKAEKVAEEKLGAQLDI 200          
BLAST of EY744602 vs. ExPASy Swiss-Prot
Match: R13A1_ARATH (60S ribosomal protein L13a-1 OS=Arabidopsis thaliana GN=RPL13AA PE=2 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 5.396e-90
Identity = 160/198 (80.81%), Postives = 174/198 (87.88%), Query Frame = 3
Query:   33 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLESEVGWNYYDTIRELEKSRQERSQVAYERKKQLHKLRAKAEKGAKKKLVSQL 626
            MVSGSGICAKRVVVDARHHMLGRLAS+VAK+LLNGQ +V VRCEEIC+SGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAP+KIFWRTVRGMIPHKT            +EGVP PYDK+KRMV+PDALKVLRLQ GHKYCLLGRL SEVGWN+YDTI+ELE  R+ER+Q  YERKKQL KLRAKAEK A++KL SQL
Sbjct:    1 MVSGSGICAKRVVVDARHHMLGRLASVVAKDLLNGQNIVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGANALARLKVFEGVPTPYDKIKRMVVPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELENKRKERAQAVYERKKQLSKLRAKAEKVAEEKLGSQL 198          
BLAST of EY744602 vs. ExPASy Swiss-Prot
Match: R13A2_ARATH (60S ribosomal protein L13a-2 OS=Arabidopsis thaliana GN=RPL13AB PE=1 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 1.202e-89
Identity = 164/203 (80.79%), Postives = 175/203 (86.21%), Query Frame = 3
Query:   33 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLESEVGWNYYDTIRELEKSRQERSQVAYERKKQLHKLRAKAEKGAKKKLVSQLYIPGS 641
            MVSGSGIC+KRVVVDARHHM GRLASI+AKELLNGQ VV VRCEEIC+SGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAP+KIFWRTVRGMIPHKT            +EGVP PYDKVKRMVIPDALKVLRLQ GHKYCLLGRL SEVGWN+YDTI+ELE  R+ERSQ  YERKKQL KLRAKAEK A++KL SQL +  S
Sbjct:    1 MVSGSGICSKRVVVDARHHMCGRLASIIAKELLNGQSVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGVPPPYDKVKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELEVKRKERSQALYERKKQLTKLRAKAEKVAEEKLGSQLDVLAS 203          
BLAST of EY744602 vs. ExPASy Swiss-Prot
Match: R13A3_ARATH (60S ribosomal protein L13a-3 OS=Arabidopsis thaliana GN=RPL13AC PE=2 SV=1)

HSP 1 Score: 327.791 bits (839), Expect = 5.966e-89
Identity = 160/198 (80.81%), Postives = 173/198 (87.37%), Query Frame = 3
Query:   33 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLESEVGWNYYDTIRELEKSRQERSQVAYERKKQLHKLRAKAEKGAKKKLVSQL 626
            MVSGSGICAKRVVVD RHHMLGRLAS  AKELLNGQ+VV VRCEEIC+SGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAP+KIFWRTVRGMIPHKT            +EG+P PYDK+KRMVIPDALKVLRLQ GHKYCLLGRL SEVGWN+YDTI+ELE  R+ERSQV YERKKQL+KLR KAEK A+++L SQL
Sbjct:    1 MVSGSGICAKRVVVDGRHHMLGRLASNTAKELLNGQEVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGIPPPYDKIKRMVIPDALKVLRLQSGHKYCLLGRLSSEVGWNHYDTIKELETKRKERSQVMYERKKQLNKLRTKAEKVAEERLGSQL 198          
BLAST of EY744602 vs. ExPASy Swiss-Prot
Match: RL13A_LUPLU (60S ribosomal protein L13a OS=Lupinus luteus GN=RPL13A PE=2 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 6.174e-86
Identity = 160/200 (80.00%), Postives = 174/200 (87.00%), Query Frame = 3
Query:   33 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLESEVGWNYYDTIRELEKSRQERSQVAYERKKQLHKLRAKAEKGAKKKLVSQLYI 632
            MVSGSGI AKRVVVDARHHMLGRLASIVAKELLNGQKVV VR EEIC+SGGLVRQKMKY+RFLRKRMNTKPSHGPIH  AP+KIFWRTVRGMIPHKT            YEG+P P+DK KR+V+PDALKVLRLQKGHKYCLLG+L SEVGWNYYDTI+ELEK R+ERSQV YERKKQL+KLR KAE+ A++KL SQL I
Sbjct:    1 MVSGSGIAAKRVVVDARHHMLGRLASIVAKELLNGQKVVIVRSEEICISGGLVRQKMKYLRFLRKRMNTKPSHGPIHC-APSKIFWRTVRGMIPHKTKRGEHALARLKVYEGIPPPFDKQKRLVVPDALKVLRLQKGHKYCLLGQLSSEVGWNYYDTIKELEKKRKERSQVVYERKKQLNKLRVKAEQVAQEKLGSQLDI 199          
BLAST of EY744602 vs. ExPASy Swiss-Prot
Match: RL13A_PICMA (60S ribosomal protein L13a OS=Picea mariana GN=RPL13A PE=2 SV=1)

HSP 1 Score: 305.064 bits (780), Expect = 4.141e-82
Identity = 147/203 (72.41%), Postives = 172/203 (84.73%), Query Frame = 3
Query:   33 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLESEVGWNYYDTIRELEKSRQERSQVAYERKKQLHKLRAKAEKGAKKKLVSQLYIPGS 641
            MVSGSGICAK VVVDARHHMLGRLASI+AKELL+GQ+VV VRCEEICMSGGLVRQKMKY+RFLRKRMNTKPSHGPIHFRAP++I WRT+RGMIPHKT            +EGVP PYD+ KRMVIPDALKVLRLQ GHKYCLLGRL  EVGW+++DTI ELE+ R+ ++QV+YER+KQL KLR+KA + A+K+L  ++ +  S
Sbjct:    1 MVSGSGICAKEVVVDARHHMLGRLASILAKELLHGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAPSRILWRTIRGMIPHKTKRGAAALATLRAFEGVPPPYDRKKRMVIPDALKVLRLQPGHKYCLLGRLSKEVGWHHFDTITELEEKRKAKAQVSYERRKQLAKLRSKAVELAEKQLAPEMELLAS 203          
BLAST of EY744602 vs. ExPASy Swiss-Prot
Match: RL13A_CYAPA (60S ribosomal protein L13a OS=Cyanophora paradoxa PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 3.903e-56
Identity = 108/184 (58.70%), Postives = 131/184 (71.20%), Query Frame = 3
Query:   60 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLESEVGWNYYDTIRELEKSRQERSQVAYERKKQLHKLRAKAEKGAKKK 611
            K VVVD R H+LGRLA+ +AKELLNGQ+VVAVR EEI +SG L R K+K+  FL+KRMNT P  GP HFR+PA+I WRT+RGMIPHKT            +EGVP PYDK+KRMVIP AL+VLRL+ G K+C+LGRL +EVGW + D +  LE+ R+ +S   Y RKK L  LRAKA      K
Sbjct:    4 KVVVVDCRGHLLGRLAATLAKELLNGQRVVAVRTEEINISGSLFRNKLKFHAFLKKRMNTNPRRGPFHFRSPARILWRTIRGMIPHKTPRGAAALERLKAFEGVPPPYDKMKRMVIPQALRVLRLKPGRKFCVLGRLATEVGWRHSDLVTRLEEKRKTKSAAFYARKKTLVNLRAKAAVAVASK 187          
BLAST of EY744602 vs. ExPASy Swiss-Prot
Match: RL13A_MACFA (60S ribosomal protein L13a OS=Macaca fascicularis GN=RPL13A PE=2 SV=3)

HSP 1 Score: 214.927 bits (546), Expect = 5.636e-55
Identity = 102/183 (55.74%), Postives = 133/183 (72.68%), Query Frame = 3
Query:   66 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLESEVGWNYYDTIRELEKSRQERSQVAYERKKQLHKLRAKAEKGAKKKL 614
            +V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG   R K+KY+ FLRKRMNT PS GP HFRAP++IFWRTVRGM+PHKT            ++G+P PYDK KRMV+P ALKV+RL+   K+  LGRL  EVGW Y      LE+ R+E++++ Y +KKQL +LR +AEK  +KK+
Sbjct:    7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTTTLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKI 189          
BLAST of EY744602 vs. ExPASy Swiss-Prot
Match: RL13A_HUMAN (60S ribosomal protein L13a OS=Homo sapiens GN=RPL13A PE=1 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 5.636e-55
Identity = 102/183 (55.74%), Postives = 133/183 (72.68%), Query Frame = 3
Query:   66 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLESEVGWNYYDTIRELEKSRQERSQVAYERKKQLHKLRAKAEKGAKKKL 614
            +V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG   R K+KY+ FLRKRMNT PS GP HFRAP++IFWRTVRGM+PHKT            ++G+P PYDK KRMV+P ALKV+RL+   K+  LGRL  EVGW Y      LE+ R+E++++ Y +KKQL +LR +AEK  +KK+
Sbjct:    7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKI 189          
BLAST of EY744602 vs. ExPASy Swiss-Prot
Match: RL13A_PONAB (60S ribosomal protein L13a OS=Pongo abelii GN=RPL13A PE=2 SV=3)

HSP 1 Score: 214.542 bits (545), Expect = 7.361e-55
Identity = 102/183 (55.74%), Postives = 133/183 (72.68%), Query Frame = 3
Query:   66 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLESEVGWNYYDTIRELEKSRQERSQVAYERKKQLHKLRAKAEKGAKKKL 614
            +V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG   R K+KY+ FLRKRMNT PS GP HFRAP++IFWRTVRGM+PHKT            ++G+P PYDK KRMV+P ALKV+RL+   K+  LGRL  EVGW Y      LE+ R+E++++ Y +KKQL +LR +AEK  +KK+
Sbjct:    7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTSPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLVRLRKQAEKNVEKKI 189          
The following BLAST results are available for this feature:
BLAST of EY744602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
R13A4_ARATH4.132e-9081.5060S ribosomal protein L13a-4 OS=Arabidopsis thalia... [more]
R13A1_ARATH5.396e-9080.8160S ribosomal protein L13a-1 OS=Arabidopsis thalia... [more]
R13A2_ARATH1.202e-8980.7960S ribosomal protein L13a-2 OS=Arabidopsis thalia... [more]
R13A3_ARATH5.966e-8980.8160S ribosomal protein L13a-3 OS=Arabidopsis thalia... [more]
RL13A_LUPLU6.174e-8680.0060S ribosomal protein L13a OS=Lupinus luteus GN=RP... [more]
RL13A_PICMA4.141e-8272.4160S ribosomal protein L13a OS=Picea mariana GN=RPL... [more]
RL13A_CYAPA3.903e-5658.7060S ribosomal protein L13a OS=Cyanophora paradoxa ... [more]
RL13A_MACFA5.636e-5555.7460S ribosomal protein L13a OS=Macaca fascicularis ... [more]
RL13A_HUMAN5.636e-5555.7460S ribosomal protein L13a OS=Homo sapiens GN=RPL1... [more]
RL13A_PONAB7.361e-5555.7460S ribosomal protein L13a OS=Pongo abelii GN=RPL1... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-002-D10-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744602 ID=EY744602; Name=EY744602; organism=Citrus sinensis; type=EST; length=983bp
CCACGCGTCCGAGAGAGAGAGGAACCCTAATAATGGTGTCGGGATCGGGA
ATCTGCGCGAAGCGAGTGGTGGTGGACGCACGCCACCACATGCTGGGGCG
GCTGGCGTCGATCGTGGCCAAGGAGCTCCTCAACGGACAGAAAGTCGTCG
CGGTCCGCTGCGAAGAGATTTGCATGTCCGGCGGCCTCGTCCGCCAGAAA
ATGAAGTACATGCGGTTCCTTCGCAAGCGCATGAACACCAAGCCTTCTCA
CGGTCCCATCCACTTCCGCGCCCCTGCCAAGATCTTCTGGCGCACCGTCC
GCGGGATGATACCGCATAAGACCAAGCGTGGAGCTGCAGCACTTGCTCGA
TTGAAGGCATATGAAGGGGTCCCTGCACCTTATGACAAGGTGAAGAGAAT
GGTTATCCCCGACGCTCTCAAGGTTTTGAGGCTTCAGAAGGGTCACAAGT
ACTGCTTGTTAGGTCGCCTGGAATCTGAGGTTGGATGGAATTATTATGAC
ACCATCAGGGAGCTTGAGAAGAGTAGACAGGAGAGGTCACAGGTGGCTTA
TGAGAGGAAGAAGCAGCTCCACAAACTTAGGGCTAAGGCTGAAAAGGGTG
CAAAAAAAAAACTGGTCTCGCAATTGTACATCCCTGGCTCCCGGCCAAAT
ATTGATCAATTTGCCTCGTGAAAAAAATTTTTGGTTGGGGATTGTCTTGA
ATTTTCCTTGGGGTTTTCCAACTTGGTTCAAGAAATTTTTAGAAGCAAAA
AATTTGGAGACAACTTGGAATGGAATAGCTTTTTTTTTTCGCCCACTTAA
ATGCGGTGGGTTCGTAAAAGGATTTTCCCTTTTAGTTCCAAAAAAAGATC
GGGGGGGGGGGGTTGTTTTTGCGCTAGGGGCCACGATTAATACGACAGAC
GGGAAACACAGAGGTCGCGCGCAACGGAGGAGCAGCGAACGACGCAACCA
GCTCGAACCGGCTGCCGAACGGACACCCGCTGA
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