EY744599

Overview
NameEY744599
Unique NameEY744599
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length964
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744599 vs. ExPASy Swiss-Prot
Match: LIGA_RAT (Ligatin OS=Rattus norvegicus GN=Lgtn PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.315e-24
Identity = 77/231 (33.33%), Postives = 111/231 (48.05%), Query Frame = 2
Query:   29 AVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYRDLLWGSVEGHSVPNAGFLEDVVVEDPAFLSTSQVSDSCEGAAD--------SSNDQKNGEEGIIDADNANSEPNSTSATQDDFDGNIVEQVAADVGDLKLTENVDAGETNEEHHVLTTEDVDAYLDKCLLQALHTTVKDKDLPMPGSTLWSNHILPCRPSGITLDIKKSSHKRLSKWLQAKSSAGLISVKK 697
            A+ + GN AP+AVG   MS+ + L +GL+GK + + H Y+D LW S +  S P    L      DP        +DSCE  AD        S + +   E G +    A+ +PNS + +QD  DG  ++                             E +D  L++C L AL + VK  DLP+  STL  +H+  C P G  LDIKKSS+K+LSK+LQ      ++ VK+
Sbjct:  134 AIALVGNRAPVAVGVAAMSTAQMLASGLKGKGISVLHTYQDHLWRSGDKSSPPAIAPL------DP--------TDSCEEKADLGLHGNLRSLSLEGEEENGQVPNPEASDDPNSRALSQDSVDGKPLQ-----------------------------EQMDELLEQCFLHALKSRVKKADLPLLTSTLLGSHMFSCCPEGQQLDIKKSSYKKLSKFLQHMQQEQIVQVKE 321          
BLAST of EY744599 vs. ExPASy Swiss-Prot
Match: LIGA_MOUSE (Ligatin OS=Mus musculus GN=Lgtn PE=2 SV=3)

HSP 1 Score: 105.916 bits (263), Expect = 3.582e-22
Identity = 70/223 (31.39%), Postives = 104/223 (46.64%), Query Frame = 2
Query:   29 AVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYRDLLWGSVEGHSVPNAGFLEDVVVEDPAFLSTSQVSDSCEGAADSSNDQKNGEEGIIDADNANSEPNSTSATQDDFDGNIVEQVAADVGDLKLTENVDAGETNEEHHVLTTEDVDAYLDKCLLQALHTTVKDKDLPMPGSTLWSNHILPCRPSGITLDIKKSSHKRLSKWLQAKSSAGLISVKK 697
            A+ + GN AP+A+G   MS+ + L +GL+GK + + H Y+D LW S +  S P    L      DP      +V    +G   S       E G +    A+ + +S + +QD  DG  ++                             E +D  L +C L AL + VK  DLP+  STL  +H+  C P G  LDIKKSS+K+LSK+LQ      ++ VK+
Sbjct:  134 AIALVGNRAPVAIGVAAMSTAQMLASGLKGKGVSVLHTYQDHLWRSGDKSSPPAIAPL------DPTDSCEEKVHLGLQGNLKSLTLDGEEENGQVPLREASEDTSSRAPSQDSLDGKPLQ-----------------------------EQMDDLLLRCFLHALKSRVKKADLPLLTSTLLGSHMFSCCPEGQQLDIKKSSYKKLSKFLQHMQQEQIVQVKE 321          
BLAST of EY744599 vs. ExPASy Swiss-Prot
Match: LIGA_PONAB (Ligatin OS=Pongo abelii GN=LGTN PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 5.172e-21
Identity = 68/225 (30.22%), Postives = 103/225 (45.78%), Query Frame = 2
Query:   29 AVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYRDLLWGSVEGHSVPNAGFLEDVVVEDPAFLSTSQVSDSCEGAADSSNDQKNGEEGIIDADNANSEPNSTSATQDDFDGNIVEQVAADVGDLKLTENVDAGETNEEHHVLTT--EDVDAYLDKCLLQALHTTVKDKDLPMPGSTLWSNHILPCRPSGITLDIKKSSHKRLSKWLQAKSSAGLISVKK 697
            A+ + GN AP+A+G   MS+ E L +GL+G+   + H Y+D LW S    S P+           P  L ++ +S+               E+G +  D+           + + +   V Q   D    +  E+      N++     T  E +D  L +C L AL   VK  DLP+  ST   +H+  C P G  LDIKKSS+K+LSK+LQ      +I VK+
Sbjct:  134 AISLVGNRAPVAIGVAAMSTAEMLTSGLKGRGFSVLHTYQDHLWRSGNKSSPPSIA---------PLALDSADLSE---------------EKGSVQMDSTLQGDMRHMTLEGEEENGEVHQAREDKSLSEAPEDTSTRGLNQDSTDSKTLQEQMDELLQQCFLHALKCRVKKADLPLLASTFLGSHMFSCCPEGRQLDIKKSSYKKLSKFLQQMQQEQIIQVKE 334          
BLAST of EY744599 vs. ExPASy Swiss-Prot
Match: LIGA_HUMAN (Ligatin OS=Homo sapiens GN=LGTN PE=1 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 8.823e-21
Identity = 68/225 (30.22%), Postives = 103/225 (45.78%), Query Frame = 2
Query:   29 AVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYRDLLWGSVEGHSVPNAGFLEDVVVEDPAFLSTSQVSDSCEGAADSSNDQKNGEEGIIDADNANSEPNSTSATQDDFDGNIVEQVAADVGDLKLTENVDAGETNEEHHVLTT--EDVDAYLDKCLLQALHTTVKDKDLPMPGSTLWSNHILPCRPSGITLDIKKSSHKRLSKWLQAKSSAGLISVKK 697
            A+ + GN AP+A+G   MS+ E L +GL+G+   + H Y+D LW S    S P+           P  L ++ +S+               E+G +  D+           + + +   V Q   D    +  E+      N++     T  E +D  L +C L AL   VK  DLP+  ST   +H+  C P G  LDIKKSS+K+LSK+LQ      +I VK+
Sbjct:  134 AISLVGNRAPVAIGVAAMSTAEMLTSGLKGRGFSVLHTYQDHLWRSGNKSSPPSIA---------PLALDSADLSE---------------EKGSVQMDSTLQGDMRHMTLEGEEENGEVHQAREDKSLSEAPEDTSTRGLNQDSTDSKTLQEQMDELLQQCFLHALKCRVKKADLPLLTSTFLGSHMFSCCPEGRQLDIKKSSYKKLSKFLQQMQQEQIIQVKE 334          
BLAST of EY744599 vs. ExPASy Swiss-Prot
Match: LIGA_BOVIN (Ligatin OS=Bos taurus GN=LGTN PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.379e-20
Identity = 73/223 (32.74%), Postives = 105/223 (47.09%), Query Frame = 2
Query:   29 AVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYRDLLWGSVEGHSVPNAGFLEDVVVEDPAFLSTSQVSDSCEGAADSSNDQKNGEEGIIDADNANSEPNSTSATQDDFDGNIVEQVAADVGDLKLTENVDAGETNEEHHVLTTEDVDAYLDKCLLQALHTTVKDKDLPMPGSTLWSNHILPCRPSGITLDIKKSSHKRLSKWLQAKSSAGLISVKK 697
            AV + GN AP+AVG   MS+ E L +GL+G+   + H Y+D LW S +  S P+   L      +P  LS  +     + A   +  Q   EE   +      E + + AT+D   G +      D  D K  +                E +D  L  C L AL  +V+  DLP+  STL  +H+  C P G  LDIKKSS+K+LSK+LQ      +I V++
Sbjct:  134 AVALVGNRAPVAVGVAAMSTAEMLASGLKGRGFCVLHSYQDHLWRSGDKSSPPSIAPL----ALNPPDLSEGKGCVKADTALQGAMRQLTLEE---EVQQRCEEKSPSEATEDPGPGGL----HVDPMDSKTLQ----------------EQMDELLQTCFLHALKCSVRKADLPLLTSTLLGSHMFSCCPEGRQLDIKKSSYKKLSKFLQHMQQEQIIQVQE 329          
The following BLAST results are available for this feature:
BLAST of EY744599 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
LIGA_RAT1.315e-2433.33Ligatin OS=Rattus norvegicus GN=Lgtn PE=2 SV=1[more]
LIGA_MOUSE3.582e-2231.39Ligatin OS=Mus musculus GN=Lgtn PE=2 SV=3[more]
LIGA_PONAB5.172e-2130.22Ligatin OS=Pongo abelii GN=LGTN PE=2 SV=1[more]
LIGA_HUMAN8.823e-2130.22Ligatin OS=Homo sapiens GN=LGTN PE=1 SV=3[more]
LIGA_BOVIN4.379e-2032.74Ligatin OS=Bos taurus GN=LGTN PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionCS00-C5-003-002-D06-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744599 ID=EY744599; Name=EY744599; organism=Citrus sinensis; type=EST; length=964bp
CCACGCGTCCGCGGACGCGTGGGCGTGGGCGGTGAAAGTTCCTGGCAATC
CAGCACCTATAGCTGTTGGTTCTACTACTATGAGCAGCACTGAAGCTTTG
AAAGCTGGTTTACGTGGCAAGGCTCTAAGGATAACTCACTATTATCGTGA
CTTATTATGGGGATCAGTTGAGGGTCATTCCGTGCCAAATGCAGGATTTT
TAGAAGATGTGGTAGTTGAGGATCCTGCTTTTTTGTCAACATCCCAAGTT
TCTGATTCGTGCGAAGGTGCTGCTGACAGTTCAAATGATCAAAAGAATGG
CGAAGAAGGCATTATTGATGCAGACAATGCCAATTCTGAACCTAATTCTA
CTTCAGCAACACAAGATGATTTTGATGGTAATATAGTCGAACAAGTAGCT
GCAGATGTGGGTGATTTGAAATTAACAGAAAATGTTGATGCTGGTGAAAC
GAATGAGGAGCACCATGTTCTAACCACCGAGGATGTGGATGCTTATTTGG
ACAAATGCCTTCTGCAAGCCTTGCATACGACGGTAAAGGATAAAGACCTT
CCTATGCCTGGAAGCACATTGTGGTCAAATCATATATTACCTTGTAGGCC
TTCTGGTATCACGCTGGATATTAAGAAATCGTCTCACAAAAGATTATCTA
AATGGTTACAGGCTAAATCATCTGCAGGACTGATTTCAGTGAAAAAAAAA
TAATACAAAAAGGAATCAATGTTATTTTCGGTTAATCCTGGGTCTTCCGA
AACAATTATCCTTCCAGCCCGAAAAACGACCCACGGGAAAAAGCCCATCA
AAGCTGTGGTTATTGCCGGCTAGGGTAAAAAATTCCCCCCACAAAAAATC
CCTTGAAATCCCACAAGGGTTTTTAAAACCCAAAGGGGGGCTTGTCAAAC
CCCCTTTTTTTTCCCCCCGGGTGTGGGGGCGGATAAGAGGGGGAAAAAAT
TTTTACCCCTTTTT
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