EY744585

Overview
NameEY744585
Unique NameEY744585
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length992
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY744585_ssr15 microsatellite EY744585_ssr15:15..26. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1976 contig Csv1_Contig1976:48..1039. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY744585 vs. ExPASy Swiss-Prot
Match: FTSHA_ARATH (Cell division protease ftsH homolog 10, mitochondrial OS=Arabidopsis thaliana GN=FTSH10 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 7.053e-21
Identity = 68/180 (37.78%), Postives = 87/180 (48.33%), Query Frame = 3
Query:   99 MIFSKLGRCFARSSSRSNSLLYXXXXXXXXXXXXXPRLPR---ITXXXXXXXXXXXXXXXAAIGAKNESNLWDLNHVLANPGIYRFFSSESPKNKKNFENFYPXXXXXXXXXXXXXXXXXXXXNTDDHGNFQDTFMKQFQNLITPLLVIALFLSSFSLSPREQQQINFSEFKNKLLEPRL 629
            MIFSKLG   ARSS RS   +Y              R P+                    A+  A+      DL+   ANP + RFFSS++PK KKN+EN+YP                      ++  N  D F  ++QN++ PL+ IAL LS+FSL  REQQQI+F EFKNKLLE  L
Sbjct:    1 MIFSKLGSSLARSS-RSKGFVYGGGVRSAVFNQGRLRAPQNLEAAVNQVDGGLGFLRRHFASFAARKGLEAGDLSRAFANPRLRRFFSSQTPK-KKNYENYYPKDSKKAPKNEQKSESRDGSKKNENE-NAGDAFSNEYQNMLIPLMAIALILSTFSLGSREQQQISFQEFKNKLLEAGL 177          
BLAST of EY744585 vs. ExPASy Swiss-Prot
Match: FTSH3_ARATH (Cell division protease ftsH homolog 3, mitochondrial OS=Arabidopsis thaliana GN=FTSH3 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 7.798e-20
Identity = 66/178 (37.08%), Postives = 86/178 (48.31%), Query Frame = 3
Query:   96 IMIFSKLGRCFARSSSRSNSLLYXXXXXXXXXXXXXPRLPRITXXXXXXXXXXXXXXXAAIGAKNESNLWDLNHVLANPGIYRFFSSESPKNKKNFENFYPXXXXXXXXXXXXXXXXXXXXNTDDHGNFQDTFMKQFQNLITPLLVIALFLSSFSLSPREQQQINFSEFKNKLLEPRL 629
            ++ FSKL R    S SRS   LY             P L   +               A++ ++      DL  V ANP + RFFS E+PK KKN+EN++P                    N ++  N  D FM +FQNL+ PLL +A+F S+FS    EQQQI+F EFKNKLLEP L
Sbjct:    3 MIFFSKLNR----SISRSKGFLYGGGVRSAARLLTSPGLEAASVNEVEGGLGFIRRHFASLASRKGLVNNDLIGVFANPRLRRFFSDEAPK-KKNYENYFPKDKQEPKSDQKSEHKEGSEKNENE--NVGDMFMNRFQNLLIPLLALAVFFSTFSFGSGEQQQISFQEFKNKLLEPGL 173          
BLAST of EY744585 vs. ExPASy Swiss-Prot
Match: FTSH8_ORYSJ (Cell division protease ftsH homolog 8, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH8 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.165e-15
Identity = 49/109 (44.95%), Postives = 60/109 (55.05%), Query Frame = 3
Query:  306 DLNHVLANPGIYRFFSSESPKNKKNFENFYPXXXXXXXXXXXXXXXXXXXXN-TDDHGNFQDTFMKQFQNLITPLLVIALFLSSFSLSPREQQQINFSEFKNKLLEPRL 629
            D   +LANP   R FS  S   KKN+EN+YP                    + TDD  NFQ+T  KQ QN + PLL + L LSS S S  +Q++I+F EFKNKLLEP L
Sbjct:   79 DWRSILANPQFRRLFSDGS---KKNYENYYPKGKKEAPKGDGSNKSDSKQDSSTDDQWNFQETASKQLQNFLAPLLFLGLMLSSLSSSSSDQKEISFQEFKNKLLEPGL 184          
The following BLAST results are available for this feature:
BLAST of EY744585 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
FTSHA_ARATH7.053e-2137.78Cell division protease ftsH homolog 10, mitochondr... [more]
FTSH3_ARATH7.798e-2037.08Cell division protease ftsH homolog 3, mitochondri... [more]
FTSH8_ORYSJ1.165e-1544.95Cell division protease ftsH homolog 8, mitochondri... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C5-003-002-C04-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744585 ID=EY744585; Name=EY744585; organism=Citrus sinensis; type=EST; length=992bp
CCACGCGTCCGCGTCAACAACAACAAAAAAATACAAAACCTCTGTCACCA
AATCGGTTTTCCAGGATTACTTTCATTTTGTTTTCCAGGATATAAATTAT
GATCTTTTCTAAGCTCGGGCGTTGCTTCGCGCGATCATCTTCTCGTTCTA
ATAGTTTGTTGTACGGTGGCGGAGTGAGATCGGCGATTGTTGGCGGAGGG
ATTCCGCGGCTGCCACGTATTACGGATGGATTAGTGGACGGAAGATTAGG
GGTTTTGAGAGGATACTTAGCTGCAATAGGAGCTAAAAACGAGTCGAATT
TATGGGATTTGAATCATGTTCTTGCAAACCCTGGGATTTACAGATTTTTC
TCCAGTGAATCACCCAAGAATAAGAAAAATTTTGAGAATTTCTACCCCAA
AGAGAAGAAGGAAATACCAAAAGAGGATGAGCAGAAATCCGAGTCTAAAG
AAGATTCAAATACAGATGATCATGGGAATTTTCAGGATACTTTCATGAAG
CAGTTTCAAAATTTAATCACCCCTCTACTAGTGATTGCACTGTTTCTTTC
TTCCTTTTCTTTGAGTCCTCGTGAACAGCAACAAATTAATTTTTCAGAGT
TCAAAAACAAGCTTCTGGAACCCAGGCTTAGTGGACCATATTGTTGTTTT
CTATAAATCAGTTGGCAAGGGAATTTTGAAAAACCTCCCCCCCCAAATCC
AACAATTTGAGGATGAATTTCCATGGTCCCGGTTAGCGGGTACCCCTTCA
AAAAGGACGGGGGGGGCCAAAAAAAAAAAAACTAATTTCAATTTTGGGGA
GGGGTTAAAACCTTTTGGAGGGAAAAATTTGGGAAGGAAAACCACAAAAA
AACCCACCTTAGGGGAATTTGTTCCCCTCCCCAATTTTTTGTTTTCCCCG
GGTCCCTTTTTTGTGTTCCCCAAAAAAAAGGGGTTTTGGGGGGAACAAAA
TGAAAAAACTGGGGAAAGGAGGGGGGTTGGGCGCCCCCCCAC
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