EY744562

Overview
NameEY744562
Unique NameEY744562
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length519
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6055 contig Csv1_Contig6055:1..486. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY744562 vs. ExPASy Swiss-Prot
Match: RL3_ORYSJ (60S ribosomal protein L3 OS=Oryza sativa subsp. japonica GN=RPL3 PE=2 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 3.093e-44
Identity = 82/94 (87.23%), Postives = 89/94 (94.68%), Query Frame = 3
Query:    3 HTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMKA 284
            H   TEFDRTEKDITPMGGFPHYG+VK DYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIK+KFIDTSSKFGHGRFQTT EKQ+++G++KA
Sbjct:  296 HAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLKA 389          
BLAST of EY744562 vs. ExPASy Swiss-Prot
Match: RL31_ARATH (60S ribosomal protein L3-1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=5)

HSP 1 Score: 167.548 bits (423), Expect = 3.201e-41
Identity = 77/92 (83.70%), Postives = 86/92 (93.48%), Query Frame = 3
Query:    3 HTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRM 278
            HT +TE+DRTEKD+TPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLL QTSRLALEEIK+KFIDT+S FGHGRFQT+ EK ++Y R+
Sbjct:  296 HTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLTQTSRLALEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRV 387          
BLAST of EY744562 vs. ExPASy Swiss-Prot
Match: RL32_ARATH (60S ribosomal protein L3-2 OS=Arabidopsis thaliana GN=ARP2 PE=2 SV=4)

HSP 1 Score: 166.392 bits (420), Expect = 7.132e-41
Identity = 76/91 (83.52%), Postives = 86/91 (94.51%), Query Frame = 3
Query:    3 HTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGR 275
            H+ +TE+DRTEKDITPMGGFPHYGIVK+DYLMIKGCCVGPKKRVVTLRQ+LLKQTSRLA+EEIK+KFID +S  GHGRFQT+QEK K+YGR
Sbjct:  296 HSAMTEYDRTEKDITPMGGFPHYGIVKEDYLMIKGCCVGPKKRVVTLRQTLLKQTSRLAMEEIKLKFIDAASNGGHGRFQTSQEKAKFYGR 386          
BLAST of EY744562 vs. ExPASy Swiss-Prot
Match: RL3_DROME (60S ribosomal protein L3 OS=Drosophila melanogaster GN=RpL3 PE=1 SV=3)

HSP 1 Score: 134.035 bits (336), Expect = 3.922e-31
Identity = 60/89 (67.42%), Postives = 74/89 (83.15%), Query Frame = 3
Query:   15 TEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 281
            TE+D T+K ITPMGGFPHYG V +D++MIKGCC+G KKR++TLR+SLLK T R ALE+IK+KFIDTSSK GHGRFQT  +K  + G +K
Sbjct:  305 TEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLK 393          
BLAST of EY744562 vs. ExPASy Swiss-Prot
Match: RL3_TOXCA (60S ribosomal protein L3 OS=Toxocara canis GN=RPL3 PE=2 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 1.262e-29
Identity = 57/91 (62.64%), Postives = 74/91 (81.32%), Query Frame = 3
Query:    9 GITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 281
            G T++D TEK + PMGGFPHYG+V  D++MI+GCCVG KKR +TLR+SL+ QT R A E+I +K+IDTSSKFGHGRFQT  EK+ + G++K
Sbjct:  300 GGTDYDITEKSVNPMGGFPHYGLVNQDFVMIRGCCVGSKKRPITLRKSLIVQTKRFAHEKINLKWIDTSSKFGHGRFQTHAEKRAFMGKLK 390          
BLAST of EY744562 vs. ExPASy Swiss-Prot
Match: RL3_CAEEL (60S ribosomal protein L3 OS=Caenorhabditis elegans GN=rpl-3 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.648e-29
Identity = 58/93 (62.37%), Postives = 76/93 (81.72%), Query Frame = 3
Query:    3 HTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 281
            + G TEFD T+K ITPMGGFP YGIV  DY+M++G  +GPKKR++TLR+SL+ QT R+A E+I +K+IDTSSK GHGRFQTT EK+ + G++K
Sbjct:  298 NNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLK 390          
BLAST of EY744562 vs. ExPASy Swiss-Prot
Match: RL3_DICDI (60S ribosomal protein L3 OS=Dictyostelium discoideum GN=rpl3 PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 2.152e-29
Identity = 59/93 (63.44%), Postives = 73/93 (78.49%), Query Frame = 3
Query:    6 TGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMKA 284
            TG TEFD TEK I PMGGF HYG+VK ++LM+KGC  GP+KR +TLR+S+  QT R ALE+I +KFIDTSSKFGHG  QT ++K KY+G  K+
Sbjct:  301 TGKTEFDLTEKTINPMGGFAHYGMVKHEFLMLKGCVAGPRKRALTLRKSITTQTGRAALEKITLKFIDTSSKFGHGLHQTAEDKTKYFGVKKS 393          
BLAST of EY744562 vs. ExPASy Swiss-Prot
Match: RL3_CAEBR (60S ribosomal protein L3 OS=Caenorhabditis briggsae GN=rpl-3 PE=3 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 1.395e-28
Identity = 56/93 (60.22%), Postives = 75/93 (80.65%), Query Frame = 3
Query:    3 HTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 281
            + G TEFD T+K I PMGGFP YG+V  DY+M++G  +GPKKR++TLR+SL+ QT R+A E+I +K+IDTSSK GHGRFQTT EK+ + G++K
Sbjct:  298 NNGSTEFDLTQKTINPMGGFPRYGLVNQDYVMLRGAILGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLK 390          
BLAST of EY744562 vs. ExPASy Swiss-Prot
Match: RL3L_BOVIN (60S ribosomal protein L3-like OS=Bos taurus GN=RPL3L PE=2 SV=3)

HSP 1 Score: 124.405 bits (311), Expect = 3.108e-28
Identity = 57/89 (64.04%), Postives = 71/89 (79.78%), Query Frame = 3
Query:   15 TEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 281
            T +D T+K ITP+GGFPHYG V +D++M+KGC  G KKRV+TLR+SLL   SR ALE I++KFIDT+SKFGHGRFQT QEK+ + G  K
Sbjct:  305 TSYDVTDKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQALENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQK 393          
BLAST of EY744562 vs. ExPASy Swiss-Prot
Match: RL3_YEAST (60S ribosomal protein L3 OS=Saccharomyces cerevisiae GN=RPL3 PE=1 SV=4)

HSP 1 Score: 122.479 bits (306), Expect = 1.181e-27
Identity = 56/91 (61.54%), Postives = 71/91 (78.02%), Query Frame = 3
Query:    9 GITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 281
            G T FDRT+K ITPMGGF HYG +K+D++M+KGC  G +KR+VTLR+SL   TSR ALEE+ +K+IDT+SKFG GRFQT  EK  + G +K
Sbjct:  294 GATSFDRTKKTITPMGGFVHYGEIKNDFIMVKGCIPGNRKRIVTLRKSLYTNTSRKALEEVSLKWIDTASKFGKGRFQTPAEKHAFMGTLK 384          
The following BLAST results are available for this feature:
BLAST of EY744562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL3_ORYSJ3.093e-4487.2360S ribosomal protein L3 OS=Oryza sativa subsp. ja... [more]
RL31_ARATH3.201e-4183.7060S ribosomal protein L3-1 OS=Arabidopsis thaliana... [more]
RL32_ARATH7.132e-4183.5260S ribosomal protein L3-2 OS=Arabidopsis thaliana... [more]
RL3_DROME3.922e-3167.4260S ribosomal protein L3 OS=Drosophila melanogaste... [more]
RL3_TOXCA1.262e-2962.6460S ribosomal protein L3 OS=Toxocara canis GN=RPL3... [more]
RL3_CAEEL1.648e-2962.3760S ribosomal protein L3 OS=Caenorhabditis elegans... [more]
RL3_DICDI2.152e-2963.4460S ribosomal protein L3 OS=Dictyostelium discoide... [more]
RL3_CAEBR1.395e-2860.2260S ribosomal protein L3 OS=Caenorhabditis briggsa... [more]
RL3L_BOVIN3.108e-2864.0460S ribosomal protein L3-like OS=Bos taurus GN=RPL... [more]
RL3_YEAST1.181e-2761.5460S ribosomal protein L3 OS=Saccharomyces cerevisi... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-002-A03-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744562 ID=EY744562; Name=EY744562; organism=Citrus sinensis; type=EST; length=519bp
CTCACACTGGCATAACTGAATTTGACAGGACTGAGAAGGACATTACCCCA
ATGGGTGGCTTTCCTCACTATGGTATTGTGAAAGATGATTATTTGATGAT
CAAGGGATGCTGTGTTGGACCTAAGAAGAGGGTGGTCACGCTTCGTCAGT
CGCTTCTCAAACAGACATCTCGTTTAGCTCTTGAGGAAATCAAAATCAAG
TTCATTGATACCTCTTCCAAGTTTGGGCATGGCCGCTTCCAGACTACACA
GGAGAAACAGAAGTACTATGGACGCATGAAAGCATAATTATGCTAAAAAG
ACAAGAGTTTTGCACCGTTATAGTTAATTCAGGCAGTCTAAATTTTATCC
AGTTTGACTATCTTGGAACAGTTTTTGAGCCTGGCATCAGCTGTGTTTCT
TTTTCCTTTTTTTATTTTATTTTTTAAGAGATGGTCGTGCTTTATTCTAT
TGAATATTTTTAAATTTAAAAAAATTCCTCAGCTCCTATCTTGAAAAAAA
AAAAAAAAAAAAAAAAAAA
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