EY744548

Overview
NameEY744548
Unique NameEY744548
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length957
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY744548_ssr48 microsatellite EY744548_ssr48:48..59. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY744548 vs. ExPASy Swiss-Prot
Match: TPIS_LACSA (Triosephosphate isomerase, cytosolic (Fragment) OS=Lactuca sativa PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.252e-27
Identity = 64/93 (68.82%), Postives = 73/93 (78.49%), Query Frame = 3
Query:  222 SKVSSRKKSNWDNVLLAYEPVWAIGIGKVANHAQVQE*QVHTKLRKWLKDNVNAGVTASTRIILGGSVNGANCKELAAQLDNDGFLGGGASLK 500
            +K  + K S+WDNV+LAYEPVWAIG GKVA+ AQ QE  VH  LRKW  DNV+A V+ASTRII GGSV+G+NCKEL  Q D DGFL GGASLK
Sbjct:   89 TKAIADKISSWDNVVLAYEPVWAIGTGKVASPAQAQE--VHAGLRKWFCDNVSAEVSASTRIIYGGSVSGSNCKELGGQTDVDGFLVGGASLK 179          
BLAST of EY744548 vs. ExPASy Swiss-Prot
Match: TPIS_ARATH (Triosephosphate isomerase, cytosolic OS=Arabidopsis thaliana GN=CTIMC PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 6.215e-27
Identity = 61/93 (65.59%), Postives = 71/93 (76.34%), Query Frame = 3
Query:  222 SKVSSRKKSNWDNVLLAYEPVWAIGIGKVANHAQVQE*QVHTKLRKWLKDNVNAGVTASTRIILGGSVNGANCKELAAQLDNDGFLGGGASLK 500
            +K  + + +NW NV++AYEPVWAIG GKVA+ AQ QE  VH +LRKWL  NV+A V A+TRII GGSVNG NCKEL  Q D DGFL GGASLK
Sbjct:  148 TKAIADRVTNWSNVVIAYEPVWAIGTGKVASPAQAQE--VHDELRKWLAKNVSADVAATTRIIYGGSVNGGNCKELGGQADVDGFLVGGASLK 238          
BLAST of EY744548 vs. ExPASy Swiss-Prot
Match: TPIS_COPJA (Triosephosphate isomerase, cytosolic OS=Coptis japonica PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.362e-26
Identity = 61/93 (65.59%), Postives = 71/93 (76.34%), Query Frame = 3
Query:  222 SKVSSRKKSNWDNVLLAYEPVWAIGIGKVANHAQVQE*QVHTKLRKWLKDNVNAGVTASTRIILGGSVNGANCKELAAQLDNDGFLGGGASLK 500
            +K  + K S+W N+++AYEPVWAIG GKVA+ AQ QE  VH +LRKW+K+NV A V  S RII GGSVNGAN KELA Q D DGFL GGASLK
Sbjct:  148 TKAIAEKVSDWTNIVVAYEPVWAIGTGKVASPAQAQE--VHFELRKWIKENVGADVAGSVRIIYGGSVNGANSKELAGQPDIDGFLVGGASLK 238          
BLAST of EY744548 vs. ExPASy Swiss-Prot
Match: TPIS_PETHY (Triosephosphate isomerase, cytosolic OS=Petunia hybrida GN=TPIP1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.872e-26
Identity = 61/93 (65.59%), Postives = 70/93 (75.27%), Query Frame = 3
Query:  222 SKVSSRKKSNWDNVLLAYEPVWAIGIGKVANHAQVQE*QVHTKLRKWLKDNVNAGVTASTRIILGGSVNGANCKELAAQLDNDGFLGGGASLK 500
            +K  + +  +W NV++AYEPVWAIG GKVA+ AQ QE  VH +LRKWL  NV+  V ASTRII GGSVNGANCKEL  Q D DGFL GGASLK
Sbjct:  148 TKAIADRVKDWTNVVVAYEPVWAIGTGKVASPAQAQE--VHAELRKWLAANVSPEVAASTRIIYGGSVNGANCKELGGQPDVDGFLVGGASLK 238          
BLAST of EY744548 vs. ExPASy Swiss-Prot
Match: TPIS_SECCE (Triosephosphate isomerase, cytosolic OS=Secale cereale PE=2 SV=3)

HSP 1 Score: 115.931 bits (289), Expect = 3.411e-25
Identity = 61/93 (65.59%), Postives = 69/93 (74.19%), Query Frame = 3
Query:  222 SKVSSRKKSNWDNVLLAYEPVWAIGIGKVANHAQVQE*QVHTKLRKWLKDNVNAGVTASTRIILGGSVNGANCKELAAQLDNDGFLGGGASLK 500
            +K  + K  +W NV++AYEPVWAIG GKVA+ AQ QE  VH  LR WLK NV+  V  STRII GGSV GA+CKELAAQ D DGFL GGASLK
Sbjct:  148 TKAIADKIKDWTNVVVAYEPVWAIGTGKVASPAQAQE--VHANLRDWLKTNVSPEVAESTRIIYGGSVTGASCKELAAQPDVDGFLVGGASLK 238          
BLAST of EY744548 vs. ExPASy Swiss-Prot
Match: TPIS_MOUSE (Triosephosphate isomerase OS=Mus musculus GN=Tpi1 PE=1 SV=3)

HSP 1 Score: 115.931 bits (289), Expect = 3.411e-25
Identity = 61/93 (65.59%), Postives = 66/93 (70.97%), Query Frame = 3
Query:  222 SKVSSRKKSNWDNVLLAYEPVWAIGIGKVANHAQVQE*QVHTKLRKWLKDNVNAGVTASTRIILGGSVNGANCKELAAQLDNDGFLGGGASLK 500
            +KV +    +W  V+LAYEPVWAIG GK A   Q QE  VH KLR WLK NVN GV  STRII GGSV GA CKELA+Q D DGFL GGASLK
Sbjct:  148 TKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQE--VHEKLRGWLKSNVNDGVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLK 238          
BLAST of EY744548 vs. ExPASy Swiss-Prot
Match: TPIS_ORYSJ (Triosephosphate isomerase, cytosolic OS=Oryza sativa subsp. japonica GN=TPI PE=1 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 7.598e-25
Identity = 61/93 (65.59%), Postives = 68/93 (73.12%), Query Frame = 3
Query:  222 SKVSSRKKSNWDNVLLAYEPVWAIGIGKVANHAQVQE*QVHTKLRKWLKDNVNAGVTASTRIILGGSVNGANCKELAAQLDNDGFLGGGASLK 500
            +K  S +  +W NV++AYEPVWAIG GKVA   Q QE  VH  LRKWL  NV+A V  STRII GGSV GANCKELAA+ D DGFL GGASLK
Sbjct:  148 TKAISERIKDWTNVVVAYEPVWAIGTGKVATPDQAQE--VHDGLRKWLAANVSAEVAESTRIIYGGSVTGANCKELAAKPDVDGFLVGGASLK 238          
BLAST of EY744548 vs. ExPASy Swiss-Prot
Match: TPIS_MAIZE (Triosephosphate isomerase, cytosolic OS=Zea mays PE=3 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 7.598e-25
Identity = 60/93 (64.52%), Postives = 66/93 (70.97%), Query Frame = 3
Query:  222 SKVSSRKKSNWDNVLLAYEPVWAIGIGKVANHAQVQE*QVHTKLRKWLKDNVNAGVTASTRIILGGSVNGANCKELAAQLDNDGFLGGGASLK 500
            +K  + K  +W NV++AYEPVWAIG GKVA  AQ QE  VH  LR WLK N +  V  STRII GGSV  ANCKELAAQ D DGFL GGASLK
Sbjct:  148 TKAIAEKIKDWSNVVVAYEPVWAIGTGKVATPAQAQE--VHASLRDWLKTNASPEVAESTRIIYGGSVTAANCKELAAQPDVDGFLVGGASLK 238          
BLAST of EY744548 vs. ExPASy Swiss-Prot
Match: TPIS_HORVU (Triosephosphate isomerase, cytosolic OS=Hordeum vulgare PE=1 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 1.296e-24
Identity = 60/93 (64.52%), Postives = 67/93 (72.04%), Query Frame = 3
Query:  222 SKVSSRKKSNWDNVLLAYEPVWAIGIGKVANHAQVQE*QVHTKLRKWLKDNVNAGVTASTRIILGGSVNGANCKELAAQLDNDGFLGGGASLK 500
            +K  + K  +W N ++AYEPVWAIG GKVA  AQ QE  VH  LR WLK NV+  V  STRII GGSV GA+CKELAAQ D DGFL GGASLK
Sbjct:  148 TKAIAGKIKDWSNGVVAYEPVWAIGTGKVATPAQAQE--VHANLRDWLKTNVSPEVAESTRIIYGGSVTGASCKELAAQADVDGFLVGGASLK 238          
BLAST of EY744548 vs. ExPASy Swiss-Prot
Match: TPIS_MACMU (Triosephosphate isomerase OS=Macaca mulatta GN=TPI1 PE=3 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 4.925e-24
Identity = 59/93 (63.44%), Postives = 65/93 (69.89%), Query Frame = 3
Query:  222 SKVSSRKKSNWDNVLLAYEPVWAIGIGKVANHAQVQE*QVHTKLRKWLKDNVNAGVTASTRIILGGSVNGANCKELAAQLDNDGFLGGGASLK 500
            +KV +    +W  V+LAYEPVWAIG GK A   Q QE  VH KLR WLK NV+  V  STRII GGSV GA CKELA+Q D DGFL GGASLK
Sbjct:  148 TKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQE--VHEKLRGWLKSNVSEAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLK 238          
The following BLAST results are available for this feature:
BLAST of EY744548 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
TPIS_LACSA1.252e-2768.82Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIS_ARATH6.215e-2765.59Triosephosphate isomerase, cytosolic OS=Arabidopsi... [more]
TPIS_COPJA2.362e-2665.59Triosephosphate isomerase, cytosolic OS=Coptis jap... [more]
TPIS_PETHY6.872e-2665.59Triosephosphate isomerase, cytosolic OS=Petunia hy... [more]
TPIS_SECCE3.411e-2565.59Triosephosphate isomerase, cytosolic OS=Secale cer... [more]
TPIS_MOUSE3.411e-2565.59Triosephosphate isomerase OS=Mus musculus GN=Tpi1 ... [more]
TPIS_ORYSJ7.598e-2565.59Triosephosphate isomerase, cytosolic OS=Oryza sati... [more]
TPIS_MAIZE7.598e-2564.52Triosephosphate isomerase, cytosolic OS=Zea mays P... [more]
TPIS_HORVU1.296e-2464.52Triosephosphate isomerase, cytosolic OS=Hordeum vu... [more]
TPIS_MACMU4.925e-2463.44Triosephosphate isomerase OS=Macaca mulatta GN=TPI... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-009-G10-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744548 ID=EY744548; Name=EY744548; organism=Citrus sinensis; type=EST; length=957bp
CCACGCGTCCGCCCACGCGTCCGCTAGCCTAAATACTCATCGTCACTATC
AATCAATCAACCACTACGTACACTACCTAAACTCTAGATGGCGGACCGTT
CCCCACCTGTGTTCAAACTCCCAGCGTTGAAGCCATTGTTTGAACTGCTA
ACTAAATCCTAGAAACCAAGATTTGTCCCTACTGTATCTAGTCTCTCGCT
GTGGAAGATTTTAGTCCTTTCAGCAAAGTATCTTCAAGAAAAAAATCCAA
CTGGGACAATGTTTTGTTGGCTTATGAGCCAGTTTGGGCCATTGGTATTG
GGAAGGTTGCAAACCATGCTCAGGTTCAGGAATGACAGGTCCATACTAAA
CTGAGGAAATGGCTTAAAGATAATGTCAATGCTGGAGTTACAGCATCAAC
TAGAATCATCTTGGGAGGTTCTGTAAATGGAGCAAATTGTAAAGAATTGG
CAGCACAATTGGATAATGATGGATTTTTGGGTGGTGGAGCTTCTCTAAAG
GTTTTGTGTTACCCCATCCCTGGACAAATACCCGACATTTCTCGCCCCAG
GGAAGTAGAAGGTGGTTCGCATTGCGGGTTGAAAAAAAATGCTAAGACTT
CGGAAATTATTCATACACCGCTATGAACATTGTTCTGCGCAGACAGATTG
CAAGAAACAATGGAACTTCGGCCTCCAAAACGAAATTTTGGAACGGGTCC
ATAGAAATCAACACAGCCAACATTGACCATCTCATCGCGAAACTTCCGAA
AACAGACTCACGTGTAACTGAAGACTATCAAGAACTTATGGCACGAAGCA
CCCCCCATCGTCCTTGAGGCTGCTACCCACAAAACAGCCAAGAAACGTAC
ACGACACCCAGAGCCAACAGCGACGCACACACTCACTGACCCACCCACGC
CTCCCAAACACTGAAACCCCACCGGTAAACACAGAACCCTCACTCCCCAG
CCCCACA
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