EY744520

Overview
NameEY744520
Unique NameEY744520
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1081
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY744520_ssr13 microsatellite EY744520_ssr13:13..22. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY744520 vs. ExPASy Swiss-Prot
Match: RB1BV_BETVU (Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 2.134e-66
Identity = 130/149 (87.25%), Postives = 131/149 (87.92%), Query Frame = 3
Query:  102 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN 548
            LIKLLLIGDSGVGKSCLLLR                  KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPT+KGQALADEYGIKFFETSAKTN
Sbjct:   15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTN 163          
BLAST of EY744520 vs. ExPASy Swiss-Prot
Match: ARA3_ARATH (Ras-related protein ARA-3 OS=Arabidopsis thaliana GN=ARA-3 PE=2 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 2.134e-66
Identity = 130/149 (87.25%), Postives = 131/149 (87.92%), Query Frame = 3
Query:  102 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN 548
            LIKLLLIGDSGVGKSCLLLR                  KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPT+KGQALADEYGIKFFETSAKTN
Sbjct:   15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTN 163          
BLAST of EY744520 vs. ExPASy Swiss-Prot
Match: RAB8A_DICDI (Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 2.891e-55
Identity = 111/149 (74.50%), Postives = 122/149 (81.88%), Query Frame = 3
Query:  102 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN 548
            LIKLLLIGDSGVGKSCLLLR                  KIRTIEL+GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE SF NIRNWIRNIEQHA+D+VNK+L+GNK DM E K+ V +S+G++LADEYGIKF ETSAK +
Sbjct:   15 LIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATDSVNKMLIGNKCDMAE-KKVVDSSRGKSLADEYGIKFLETSAKNS 162          
BLAST of EY744520 vs. ExPASy Swiss-Prot
Match: RAB8B_DICDI (Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 3.776e-55
Identity = 111/157 (70.70%), Postives = 124/157 (78.98%), Query Frame = 3
Query:  102 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNPKCGGGFL 572
            L+KLLLIGDSGVGKSCLLLR                  KIRTIEL+GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE SF +IRNWIRNIEQHASD+VNK+L+GNK DM E K+ V +S+G++LADEYGIKF ETSAK +      F+
Sbjct:   15 LVKLLLIGDSGVGKSCLLLRFSDGSFTPSFIATIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGSIRNWIRNIEQHASDSVNKMLIGNKCDMTE-KKVVDSSRGKSLADEYGIKFLETSAKNSVNVEEAFI 170          
BLAST of EY744520 vs. ExPASy Swiss-Prot
Match: YPTV2_VOLCA (GTP-binding protein yptV2 OS=Volvox carteri GN=YPTV2 PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 3.196e-54
Identity = 102/149 (68.46%), Postives = 120/149 (80.54%), Query Frame = 3
Query:  102 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN 548
            LIKLLL+GDSGVGKSCLLLR                  KI+ +++DGK +KLQIWDTAGQERFRTIT+AYYRGA GI+LVYD+TDE+SFNN+RNW+RNIEQHASDNVNKILVGNK D+ E KR V  ++GQALADE+G +F+ETSAK N
Sbjct:   13 LIKLLLVGDSGVGKSCLLLRFTDDMFTSSFITTIGIDFKIKKVDVDGKLVKLQIWDTAGQERFRTITSAYYRGAQGIILVYDITDEASFNNVRNWMRNIEQHASDNVNKILVGNKLDLAEDKRVVSIARGQALADEFGFRFYETSAKDN 161          
BLAST of EY744520 vs. ExPASy Swiss-Prot
Match: YPT2_SCHPO (GTP-binding protein ypt2 OS=Schizosaccharomyces pombe GN=ypt2 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.485e-51
Identity = 105/149 (70.47%), Postives = 115/149 (77.18%), Query Frame = 3
Query:  102 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN 548
            LIKLLLIGDSGVGKSCLLLR                  KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL+YDVTD+ SF+N+R W  N+EQHAS+NV KIL+GNK D  E +R V   +GQALADE G+KF E SAKTN
Sbjct:    9 LIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDC-EDQRQVSFEQGQALADELGVKFLEASAKTN 156          
BLAST of EY744520 vs. ExPASy Swiss-Prot
Match: RAB8A_RAT (Ras-related protein Rab-8A OS=Rattus norvegicus GN=Rab8a PE=2 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 3.096e-49
Identity = 99/149 (66.44%), Postives = 116/149 (77.85%), Query Frame = 3
Query:  102 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN 548
            L KLLLIGDSGVGK+C+L R                  KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NIRNWIRNIE+HAS +V K+++GNK D+++ KR V   +G+ LA +YGIKF ETSAK N
Sbjct:    8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKAN 155          
BLAST of EY744520 vs. ExPASy Swiss-Prot
Match: RAB8A_MOUSE (Ras-related protein Rab-8A OS=Mus musculus GN=Rab8a PE=1 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 3.096e-49
Identity = 99/149 (66.44%), Postives = 116/149 (77.85%), Query Frame = 3
Query:  102 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN 548
            L KLLLIGDSGVGK+C+L R                  KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NIRNWIRNIE+HAS +V K+++GNK D+++ KR V   +G+ LA +YGIKF ETSAK N
Sbjct:    8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKAN 155          
BLAST of EY744520 vs. ExPASy Swiss-Prot
Match: RAB8A_MACFA (Ras-related protein Rab-8A OS=Macaca fascicularis GN=RAB8A PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 3.096e-49
Identity = 99/149 (66.44%), Postives = 116/149 (77.85%), Query Frame = 3
Query:  102 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN 548
            L KLLLIGDSGVGK+C+L R                  KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NIRNWIRNIE+HAS +V K+++GNK D+++ KR V   +G+ LA +YGIKF ETSAK N
Sbjct:    8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKAN 155          
BLAST of EY744520 vs. ExPASy Swiss-Prot
Match: RAB8A_HUMAN (Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8A PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 3.096e-49
Identity = 99/149 (66.44%), Postives = 116/149 (77.85%), Query Frame = 3
Query:  102 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN 548
            L KLLLIGDSGVGK+C+L R                  KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NIRNWIRNIE+HAS +V K+++GNK D+++ KR V   +G+ LA +YGIKF ETSAK N
Sbjct:    8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKAN 155          
The following BLAST results are available for this feature:
BLAST of EY744520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB1BV_BETVU2.134e-6687.25Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB... [more]
ARA3_ARATH2.134e-6687.25Ras-related protein ARA-3 OS=Arabidopsis thaliana ... [more]
RAB8A_DICDI2.891e-5574.50Ras-related protein Rab-8A OS=Dictyostelium discoi... [more]
RAB8B_DICDI3.776e-5570.70Ras-related protein Rab-8B OS=Dictyostelium discoi... [more]
YPTV2_VOLCA3.196e-5468.46GTP-binding protein yptV2 OS=Volvox carteri GN=YPT... [more]
YPT2_SCHPO1.485e-5170.47GTP-binding protein ypt2 OS=Schizosaccharomyces po... [more]
RAB8A_RAT3.096e-4966.44Ras-related protein Rab-8A OS=Rattus norvegicus GN... [more]
RAB8A_MOUSE3.096e-4966.44Ras-related protein Rab-8A OS=Mus musculus GN=Rab8... [more]
RAB8A_MACFA3.096e-4966.44Ras-related protein Rab-8A OS=Macaca fascicularis ... [more]
RAB8A_HUMAN3.096e-4966.44Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C5-003-009-E06-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744520 ID=EY744520; Name=EY744520; organism=Citrus sinensis; type=EST; length=1081bp
CCCACGCGTCCGCTCTCTCTCTTGATCTGCTTGTGAGATATAAATTTTGG
TTAATTGCTATGGCTGCTCCACCTGCAAGAGCCCGGGCTGATTACGATTA
CCTCATAAAGCTGCTCCTGATCGGCGACAGCGGTGTTGGTAAGAGTTGTC
TCCTTCTGCGATTCTCTGATGGTTCCTTTACTACCAGTTTTATTACAACC
ATTGGTATTGACTTCAAGATTAGGACCATAGAGCTTGATGGAAAACGAAT
TAAACTTCAAATATGGGATACTGCAGGTCAAGAGAGGTTTCGAACAATTA
CAACCGCATACTACCGAGGAGCCATGGGAATATTGCTCGTATATGATGTC
ACCGACGAGTCATCTTTCAACAACATTAGGAATTGGATCCGTAATATCGA
ACAGCATGCATCTGACAATGTAAACAAGATTCTGGTGGGTAACAAGGCCG
ACATGGACGAAAGCAAAAGGGCTGTCCCCACTTCAAAGGGCCAAGCTCTT
GCTGATGAATATGGCATCAAGTTCTTTGAAACTAGTGCCAAGACCAACCC
TAAATGTGGAGGAGGGTTTCTTTTCAATTGCCAGGGACCTCACGCAAGGG
CTTGCGCATCAGGAATTCTAGGGGCTGAGCCTCCAACTATTCCAATTTAA
CCCACCTCGACAGCACACGGGGGGGGCTGCCCAAGTTCGCCCAAAAATTC
CACTGGCCTGGGGCTTTTAACACAAACATTTAAGGGGAGAGAAATACAGG
GGCGCATTGTCACCGCGGCCGCCTTTTATGGTTCAGCAACCGATATATAT
GCTGAAAATAAAAAGCTTGCGCGGGTTTGGCTGGGAACCCTAGCCTCAAC
TTCCACCCACCCCCCCACCCGCCCTGCTCCTCGCGAAAGCCGCACCAAAC
TCGCCGCGGGACTCAGAGCCATCTCCCATGACAACACCTTGACCGGCCAC
CCGTCTTGTGACGCCTCCACTCACATCTCAGCCGGTCAGGTCGCGCGAAC
AAGAGAGGCCCGGACGTGCGGAGGACGAGCGAGACCGAAGAGAAGCATTG
TGCCTATCCTGCGACGTTCGCATGACGANAA
back to top