EY744518

Overview
NameEY744518
Unique NameEY744518
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1023
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY744518 vs. ExPASy Swiss-Prot
Match: ATG4_MEDTR (Cysteine protease ATG4 OS=Medicago truncatula GN=ATG4 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.132e-13
Identity = 44/131 (33.59%), Postives = 67/131 (51.15%), Query Frame = 2 
Query:  170 VMKGFRERAGAS*CFSKSTPDTPNRSLASVXXXXXXXXXXXXXXXXXXXXXXXAFSFFETYNESSATEKKAVPNKSIGWTAPVKRLLTAGSMRRITERVIRRNKTGFSNTTRDIWLTGECIKSHKEEDLGD 562
            V+K   +R  A+ C SKS+ +  + +                            FS  ETY+ESS++EKK V +++ GW A V+++++ GSMRR  ERV+   +T  S++  DIWL G C K  + E  GD
Sbjct:    2 VLKDLCDRIVAAKCSSKSSTEIVDNTQVPASSKAGSSDSKFPKASLWSTFFTSGFSVDETYSESSSSEKKTVHSRNSGWAAAVRKVVSGGSMRRFQERVLGSCRTDVSSSDGDIWLLGVCHKISQHESTGD 132
The following BLAST results are available for this feature:
BLAST of EY744518 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ATG4_MEDTR1.132e-1333.59Cysteine protease ATG4 OS=Medicago truncatula GN=A... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C5-003-009-E04-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744518 ID=EY744518; Name=EY744518; organism=Citrus sinensis; type=EST; length=1023bp
CCACGCGTCCGCGATATTTTGCCTTGTACCATAAAAAAAGGATTTCAATT
TTCAAGTTCAAAATTCGAGGAGAAGTTGAAACCAATCATTGATTCGTTTC
GATAAATTTTTGTAAATTGGGTTGCTTTCGTGAGCCCAATTTCGTGGCCT
CATGTCGATGCATGACTAGGTAATGAAGGGATTTCGTGAAAGGGCTGGTG
CTTCATAATGTTTTTCTAAAAGTACACCTGATACACCAAACAGATCTTTG
GCATCTGTTGGTTCAGAGCCGGGATCTAATGAGAGTAAGTCATCCAAGGG
TTCCTTGTTGTCAAGCTTGATTAATTCTGCTTTCTCATTCTTTGAAACGT
ATAATGAGTCGTCTGCTACTGAAAAGAAGGCAGTTCCTAATAAAAGTATT
GGGTGGACAGCACCTGTGAAGAGACTACTGACTGCTGGCTCAATGAGGAG
AATAACTGAACGTGTAATAAGACGCAACAAGACTGGATTTTCCAACACAA
CCAGAGACATATGGCTTACTGGGGAGTGCATAAAATCGCACAAGGAGGAA
GACTTGGGGGATACCATTGGTAACAATGGGATTATACGACATACATCAAA
CATTTTGCAAAACCAAATCTGAATTCATAGCCGACGAGGCTGCAGCCCTA
ATGCGGAAACGCTCCATTCACAGCAGACGAAACCTAGGGCATGACGCACC
CCGCAGAAAGGCACGGCCTCATAACAACAAATCACACATTCCCATGAACA
CGCGAGGGAACACCACAAATTACCCCCCCACAGCACTTCCATCAACGCGG
ACGACCCGAGCCCCCCTCCGACCCTTTTAACCGCAGTACAAGACCACGCC
TCTATTACCACCCCAACCAAGCCAAAGCTGCGAAACACGCAAAAACATAA
GGAATACAGCCTCACGCCCCCAGAACGCCAACAAACCCACCCCACACACA
CGCTAACAGCGGCCCGTCCACGCCTAAACGCCCCACCCACAAACACCCAC
ACCCCGCCCGAACCAGGCCACGT
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