EY744510

Overview
NameEY744510
Unique NameEY744510
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1049
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY744510_ssr874 microsatellite EY744510_ssr874:874..883. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY744510 vs. ExPASy Swiss-Prot
Match: TOM1_CHICK (Target of Myb protein 1 OS=Gallus gallus GN=TOM1 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 5.471e-11
Identity = 33/70 (47.14%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:  268 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRI-GSRNSKVQLLALTLLETIINNCG 474
            V   ++RAT   L G DW++N+EICD++N      KD  + IKKRI G++N    +LALT+LET + NCG
Sbjct:   13 VGQRIERATDGSLRGEDWSLNMEICDIINETEEGPKDAFRAIKKRIVGNKNFHEVMLALTVLETCVKNCG 82
The following BLAST results are available for this feature:
BLAST of EY744510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TOM1_CHICK5.471e-1147.14Target of Myb protein 1 OS=Gallus gallus GN=TOM1 P... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C5-003-009-D08-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744510 ID=EY744510; Name=EY744510; organism=Citrus sinensis; type=EST; length=1049bp
CAAATAAAAAAATTTAAAAACAAAAAGAGATTGAAAGGGAGAGAGAGTGG
GAGTTTTAGAGAGAGAAAGTGGGAGAAAAAGAGAGATAATATCAATACTG
TTCGATTTAATTGATCGAGAAAGAGATAAATCTTTTCGTTACCGGAATAT
CCGGTGGCATAACGGTAATTAGTTGCGATCTCGGAGCCGGAATCGGAGTG
ATCTTCTTGGAGAGGTGTTTGATTTGATTCGTTTGTTTGGTTGGGAGAGA
GTGAGAGAGCAGAGATGGTGAATTCAATGGTGGATAGAGCCACGAGCGAC
ATGTTGATCGGCCCTGATTGGGCCATGAACATCGAGATCTGTGACATGCT
CAATCACGACCCTGGGCAAGCAAAGGATGTTGTTAAAGGTATTAAAAAGC
GTATTGGAAGTAGGAATTCAAAAGTTCAACTTCTTGCTTTAACACTGTTG
GAGACAATTATAAACAATTGTGGGGGATTTGGTCCATATGCATGTTGCAA
AGAAAAAATGTTCTTCCTGAAATGGGGGAAAATACCCCCGAACAAGCCCG
ACACCTCCGCCCAACAGAAAGAAATTAATTTCCAATAGATACCTTGCACG
ACAACTTTTCGCAGCGACCTACGGCCCGAATATCCCCAAAACTTCGGGCG
AACCCCGAACAGCTATTGCGCCCCCGGGCAACGATCCCCACACAAAGACC
CGAAAGAGCCGGACCCGAATTTACCACCCCCCAACCACCAACATCACCAT
GACACGCTCTCTCGCCACAACATGTCGCCAAACCCGGAACACTTAACAAA
AAACCAAGAACCGAGCGATCGTTGGGAGAGCAAGAAAGTCCAACGCCCCT
TGGAAATTCTACAGTACATTTCGCACACACACAGCCGCCGGAACAAGGAC
CAGCGTAACCGGCAAGACGACGACCGCAACCAGCAGCCCACCGACACGCG
ACCAACCCGCGCGAGACGGCCCCAACGATCCGGACGGGGGAACGCGACTC
AACAACGAGGCGCACCGCGCACTAAAGCTAGCCGCCGCACAACCCCACC
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