EY744506 | Citrus Genome Database

Overview


Name	EY744506
Unique Name	EY744506
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	975

Libraries


Library Name	Type
Sweet orange flower, greenhouse plant	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY744506 vs. ExPASy Swiss-Prot
Match: RH2_ARATH (DEAD-box ATP-dependent RNA helicase 2 OS=Arabidopsis thaliana GN=RH2 PE=2 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 2.015e-51
Identity = 89/106 (83.96%), Postives = 100/106 (94.34%), Query Frame = 1

Query:  121 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSTEVQALILSPTRELATQTEKVILAIG 438
            K+VFETT+G+E ITSF+ MGIK+D+LRG+Y+YGFEKPSAIQQRAVMPI++GRDVIAQAQSGTGKTSMIAL+VCQ VDTSS EVQALILSPTRELATQTEK I AIG
Sbjct:   22 KLVFETTDGIEPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQVVDTSSREVQALILSPTRELATQTEKTIQAIG 127

HSP 2 Score: 36.965 bits (84), Expect = 2.015e-51
Identity = 16/20 (80.00%), Postives = 18/20 (90.00%), Query Frame = 2

Query:  449 NIRAPACVGGKSVGEDIRKL 508
            NI+A AC+GG SVGEDIRKL
Sbjct:  131 NIQAHACIGGNSVGEDIRKL 150

HSP 3 Score: 30.0314 bits (66), Expect = 2.015e-51
Identity = 13/21 (61.90%), Postives = 16/21 (76.19%), Query Frame = 3

Query:  510 EHGLDVVSGTPAAL*DMITRK 572
            EHG+ VVSGTP  + DMI R+
Sbjct:  151 EHGVHVVSGTPGRVCDMIKRR 171

[Close]

BLAST of EY744506 vs. ExPASy Swiss-Prot
Match: IF4A3_NICPL (Eukaryotic initiation factor 4A-3 OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 7.386e-51
Identity = 93/109 (85.32%), Postives = 101/109 (92.66%), Query Frame = 1

Query:  121 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSTEVQALILSPTRELATQTEKVILAIGDFI 447
            ++VFET++GVE I SF  MGIKDDLLRG+YQYGFEKPSAIQQRAV+PII GRDVIAQAQSGTGKTSMIALTVCQ VDT S+EVQALILSPTRELA QTEKVILAIGD+I
Sbjct:    5 RLVFETSKGVEPIASFAEMGIKDDLLRGVYQYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMIALTVCQIVDTKSSEVQALILSPTRELAAQTEKVILAIGDYI 113

HSP 2 Score: 39.2762 bits (90), Expect = 7.386e-51
Identity = 16/21 (76.19%), Postives = 20/21 (95.24%), Query Frame = 2

Query:  446 LNIRAPACVGGKSVGEDIRKL 508
            +N++A AC+GGKSVGEDIRKL
Sbjct:  113 INVQAHACIGGKSVGEDIRKL 133

[Close]

BLAST of EY744506 vs. ExPASy Swiss-Prot
Match: RH2_ORYSJ (DEAD-box ATP-dependent RNA helicase 2 OS=Oryza sativa subsp. japonica GN=Os01g0639100 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 9.450e-48
Identity = 88/108 (81.48%), Postives = 98/108 (90.74%), Query Frame = 1

Query:  124 MVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSTEVQALILSPTRELATQTEKVILAIGDFI 447
            + FET+ GVE I+SFD MGI+DDLLRGIY YGFEKPSAIQQRAV+PII GRDVIAQAQSGTGKTSMI+L+VCQ VDT+  EVQALILSPTRELA QTE+V+LAIGDFI
Sbjct:   19 LTFETSPGVEVISSFDQMGIRDDLLRGIYAYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMISLSVCQIVDTAVREVQALILSPTRELAAQTERVMLAIGDFI 126

HSP 2 Score: 37.7354 bits (86), Expect = 9.450e-48
Identity = 15/21 (71.43%), Postives = 19/21 (90.48%), Query Frame = 2

Query:  446 LNIRAPACVGGKSVGEDIRKL 508
            +NI+  AC+GGKS+GEDIRKL
Sbjct:  126 INIQVHACIGGKSIGEDIRKL 146

[Close]

BLAST of EY744506 vs. ExPASy Swiss-Prot
Match: RH34_ORYSJ (DEAD-box ATP-dependent RNA helicase 34 OS=Oryza sativa subsp. japonica GN=Os03g0566800 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 6.037e-47
Identity = 86/108 (79.63%), Postives = 98/108 (90.74%), Query Frame = 1

Query:  124 MVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSTEVQALILSPTRELATQTEKVILAIGDFI 447
            + FET+ GVE I+SFD MGI++DLLRGIY YGFEKPSAIQQRAV+PII GRDVIAQAQSGTGKTSMI+L+VCQ VDT+  EVQALILSPTRELA QTE+V+LAIGD+I
Sbjct:   19 LTFETSPGVEVISSFDQMGIREDLLRGIYAYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMISLSVCQIVDTAVREVQALILSPTRELAAQTERVMLAIGDYI 126

HSP 2 Score: 37.7354 bits (86), Expect = 6.037e-47
Identity = 15/21 (71.43%), Postives = 19/21 (90.48%), Query Frame = 2

Query:  446 LNIRAPACVGGKSVGEDIRKL 508
            +NI+  AC+GGKS+GEDIRKL
Sbjct:  126 INIQVHACIGGKSIGEDIRKL 146

[Close]

BLAST of EY744506 vs. ExPASy Swiss-Prot
Match: FAL1_USTMA (ATP-dependent RNA helicase FAL1 OS=Ustilago maydis GN=FAL1 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.333e-41
Identity = 70/109 (64.22%), Postives = 94/109 (86.24%), Query Frame = 1

Query:  121 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSTEVQALILSPTRELATQTEKVILAIGDFI 447
            K+ FE++E V+  T+FDAMG+K+DLLRGIY Y FEKPSAIQQRA++PII+GRDVIAQAQSGTGKT+  ++++ Q++DT+  E QAL+LSPTRELA Q + V+LA+GD++
Sbjct:   11 KLAFESSEHVKVATTFDAMGLKEDLLRGIYAYNFEKPSAIQQRAILPIIRGRDVIAQAQSGTGKTATFSISMLQSIDTTLRETQALVLSPTRELAIQIQSVVLALGDYL 119

HSP 2 Score: 36.1946 bits (82), Expect = 1.333e-41
Identity = 15/21 (71.43%), Postives = 18/21 (85.71%), Query Frame = 2

Query:  446 LNIRAPACVGGKSVGEDIRKL 508
            LN++  AC+GG SVGEDIRKL
Sbjct:  119 LNVQCHACIGGTSVGEDIRKL 139

HSP 3 Score: 25.0238 bits (53), Expect = 1.333e-41
Identity = 10/21 (47.62%), Postives = 15/21 (71.43%), Query Frame = 3

Query:  510 EHGLDVVSGTPAAL*DMITRK 572
            ++G  +VSGTP  + DMI R+
Sbjct:  140 DYGQHIVSGTPGRVYDMIRRR 160

[Close]

BLAST of EY744506 vs. ExPASy Swiss-Prot
Match: RH34_ARATH (DEAD-box ATP-dependent RNA helicase 34 OS=Arabidopsis thaliana GN=RH34 PE=2 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 9.779e-41
Identity = 73/105 (69.52%), Postives = 92/105 (87.62%), Query Frame = 1

Query:  124 MVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSTEVQALILSPTRELATQTEKVILAIG 438
            +VFETT+G++ I SFD MG+ D +LRG+Y YG++KPS IQQRA++PI+KGRDVIAQAQSGTGKTSMIA++VCQ V+ SS +VQ L+LSP+RELA+QTEK I AIG
Sbjct:   10 LVFETTKGIKPIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISVCQIVNISSRKVQVLVLSPSRELASQTEKTIQAIG 114

HSP 2 Score: 37.3502 bits (85), Expect = 9.779e-41
Identity = 15/20 (75.00%), Postives = 19/20 (95.00%), Query Frame = 2

Query:  449 NIRAPACVGGKSVGEDIRKL 508
            NI+A AC+GGKS+GEDI+KL
Sbjct:  118 NIQAHACIGGKSIGEDIKKL 137

[Close]

BLAST of EY744506 vs. ExPASy Swiss-Prot
Match: FAL1_CRYNE (ATP-dependent RNA helicase FAL1 OS=Cryptococcus neoformans GN=FAL1 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 8.882e-40
Identity = 67/109 (61.47%), Postives = 92/109 (84.40%), Query Frame = 1

Query:  121 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSTEVQALILSPTRELATQTEKVILAIGDFI 447
            K+VFE++E V    +F+A+ +K+DLLRGIY Y FEKPSAIQQRA++PII+GRDVIAQAQSGTGKT+  ++++ Q++DT+  E QAL+LSPTRELA Q + V+LA+GD++
Sbjct:   10 KLVFESSEAVTVAPTFEALNLKEDLLRGIYAYNFEKPSAIQQRAIIPIIRGRDVIAQAQSGTGKTATFSISMLQSIDTNLRETQALVLSPTRELAVQIQTVVLALGDYM 118

HSP 2 Score: 36.1946 bits (82), Expect = 8.882e-40
Identity = 15/23 (65.22%), Postives = 18/23 (78.26%), Query Frame = 2

Query:  446 LNIRAPACVGGKSVGEDIRKLRA 514
            +N+   AC+GG SVGEDIRKL A
Sbjct:  118 MNVSCHACIGGTSVGEDIRKLEA 140

HSP 3 Score: 25.409 bits (54), Expect = 8.882e-40
Identity = 12/21 (57.14%), Postives = 14/21 (66.67%), Query Frame = 3

Query:  510 EHGLDVVSGTPAAL*DMITRK 572
            E G  VVSGTP  + DMI R+
Sbjct:  139 EAGQQVVSGTPGRVFDMIRRR 159

[Close]

BLAST of EY744506 vs. ExPASy Swiss-Prot
Match: IF4A3_XENTR (Eukaryotic initiation factor 4A-III OS=Xenopus tropicalis GN=eif4a3 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 7.665e-38
Identity = 69/109 (63.30%), Postives = 88/109 (80.73%), Query Frame = 1

Query:  121 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSTEVQALILSPTRELATQTEKVILAIGDFI 447
            K+ FET+E V+   +FD MG+++DLLRGIY YGFEKPSAIQQRA+  IIKGRDVIAQ+QSGTGKT+   ++V Q +D    E QALIL+PTRELA Q +KV+LA+GD++
Sbjct:   29 KVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKVLLALGDYM 137

HSP 2 Score: 34.2686 bits (77), Expect = 7.665e-38
Identity = 13/21 (61.90%), Postives = 18/21 (85.71%), Query Frame = 2

Query:  446 LNIRAPACVGGKSVGEDIRKL 508
            +N++  AC+GG +VGEDIRKL
Sbjct:  137 MNVQCHACIGGTNVGEDIRKL 157

HSP 3 Score: 24.2534 bits (51), Expect = 7.665e-38
Identity = 10/21 (47.62%), Postives = 15/21 (71.43%), Query Frame = 3

Query:  510 EHGLDVVSGTPAAL*DMITRK 572
            ++G  VV+GTP  + DMI R+
Sbjct:  158 DYGQHVVAGTPGRVFDMIRRR 178

[Close]

BLAST of EY744506 vs. ExPASy Swiss-Prot
Match: I4A3A_XENLA (Eukaryotic initiation factor 4A-III-A OS=Xenopus laevis GN=eif4a3-A PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 7.665e-38
Identity = 69/109 (63.30%), Postives = 88/109 (80.73%), Query Frame = 1

Query:  121 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSTEVQALILSPTRELATQTEKVILAIGDFI 447
            K+ FET+E V+   +FD MG+++DLLRGIY YGFEKPSAIQQRA+  IIKGRDVIAQ+QSGTGKT+   ++V Q +D    E QALIL+PTRELA Q +KV+LA+GD++
Sbjct:   29 KVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKVLLALGDYM 137

HSP 2 Score: 34.2686 bits (77), Expect = 7.665e-38
Identity = 13/21 (61.90%), Postives = 18/21 (85.71%), Query Frame = 2

Query:  446 LNIRAPACVGGKSVGEDIRKL 508
            +N++  AC+GG +VGEDIRKL
Sbjct:  137 MNVQCHACIGGTNVGEDIRKL 157

HSP 3 Score: 24.2534 bits (51), Expect = 7.665e-38
Identity = 10/21 (47.62%), Postives = 15/21 (71.43%), Query Frame = 3

Query:  510 EHGLDVVSGTPAAL*DMITRK 572
            ++G  VV+GTP  + DMI R+
Sbjct:  158 DYGQHVVAGTPGRVFDMIRRR 178

[Close]

BLAST of EY744506 vs. ExPASy Swiss-Prot
Match: IF4A3_DANRE (Eukaryotic initiation factor 4A-III OS=Danio rerio GN=eif4a3 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 7.670e-38
Identity = 69/109 (63.30%), Postives = 88/109 (80.73%), Query Frame = 1

Query:  121 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSTEVQALILSPTRELATQTEKVILAIGDFI 447
            K+ FET+E V+   +FD MG+++DLLRGIY YGFEKPSAIQQRA+  IIKGRDVIAQ+QSGTGKT+   ++V Q +D    E QALIL+PTRELA Q +KV+LA+GD++
Sbjct:   20 KIEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKVLLALGDYM 128

HSP 2 Score: 34.2686 bits (77), Expect = 7.670e-38
Identity = 13/21 (61.90%), Postives = 18/21 (85.71%), Query Frame = 2

Query:  446 LNIRAPACVGGKSVGEDIRKL 508
            +N++  AC+GG +VGEDIRKL
Sbjct:  128 MNVQCHACIGGTNVGEDIRKL 148

HSP 3 Score: 24.2534 bits (51), Expect = 7.670e-38
Identity = 10/21 (47.62%), Postives = 15/21 (71.43%), Query Frame = 3

Query:  510 EHGLDVVSGTPAAL*DMITRK 572
            ++G  VV+GTP  + DMI R+
Sbjct:  149 DYGQHVVAGTPGRVFDMIRRR 169

The following BLAST results are available for this feature:

BLAST of EY744506 vs. ExPASy Swiss-Prot

BLAST of EY744506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 287


Match Name	E-value	Identity	Description
RH2_ARATH	2.015e-51	83.96	DEAD-box ATP-dependent RNA helicase 2 OS=Arabidops...	[more]
IF4A3_NICPL	7.386e-51	85.32	Eukaryotic initiation factor 4A-3 OS=Nicotiana plu...	[more]
RH2_ORYSJ	9.450e-48	81.48	DEAD-box ATP-dependent RNA helicase 2 OS=Oryza sat...	[more]
RH34_ORYSJ	6.037e-47	79.63	DEAD-box ATP-dependent RNA helicase 34 OS=Oryza sa...	[more]
FAL1_USTMA	1.333e-41	64.22	ATP-dependent RNA helicase FAL1 OS=Ustilago maydis...	[more]
RH34_ARATH	9.779e-41	69.52	DEAD-box ATP-dependent RNA helicase 34 OS=Arabidop...	[more]
FAL1_CRYNE	8.882e-40	61.47	ATP-dependent RNA helicase FAL1 OS=Cryptococcus ne...	[more]
IF4A3_XENTR	7.665e-38	63.30	Eukaryotic initiation factor 4A-III OS=Xenopus tro...	[more]
I4A3A_XENLA	7.665e-38	63.30	Eukaryotic initiation factor 4A-III-A OS=Xenopus l...	[more]
IF4A3_DANRE	7.670e-38	63.30	Eukaryotic initiation factor 4A-III OS=Danio rerio...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C5-003-009-D04-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY744506 ID=EY744506; Name=EY744506; organism=Citrus sinensis; type=EST; length=975bp
CCACGCGTCCGCTCTCATTGATTCTTTGATTTCGAAGAGTAATTGTTGCG
AATTTCGTGCGAGATGGCGGCGGCGACGGCTATGCGGAGGAGAGGAGGGG
GCGGCGGAATGGATGACGACAAGATGGTGTTCGAAACAACGGAAGGAGTG
GAGGCAATCACGAGCTTCGACGCAATGGGAATAAAAGACGATCTGTTGCG
TGGAATTTATCAGTACGGATTCGAGAAGCCATCGGCCATACAACAGAGGG
CCGTTATGCCAATAATAAAGGGCCGTGATGTAATTGCACAGGCCCAGTCT
GGTACTGGCAAGACCTCTATGATTGCCCTAACTGTTTGCCAGACGGTCGA
TACTTCTAGCACAGAGGTGCAGGCGTTGATTTTGTCACCTACGAGGGAGT
TGGCGACGCAGACAGAGAAAGTGATTTTGGCAATTGGTGATTTTATTAAA
CATACGAGCACCTGCGTGTGTTGGAGGCAAAAGTGTCGGGGAAGATATTA
GGAAGTTAAGAGCATGGACTTGATGTGGTGTCTGGAACTCCTGCTGCACT
CTGAGATATGATAACCAGGAAACCTTTTGCCGTACCTACACTTATTAATT
TATTTGGAGCCTCCCTACAACCCCCATCATGTGCTGACGCAACAGGTCCC
TGGAGAAACCTCTTCATAGGTGCCTGCCAAATTTCACCCAAATCTTTCCG
GGCAGTATCACCACAACCACGGCCCTTCTTCTTCATCCCATTGGCACACG
ACCTACCACCTCCAAAAAACCACCATCGCTCAAAAAAATCTCGGGCCAAA
ACCCGCTACGTGTACCTTTTTTAATGCGCCCCACCACCCTACTCTTCTAG
TCCTGGTCTGGGCGAGCTAGAATCAGCACGCCCGGTCCATCTATTAACTC
CCCCGATACTACATTCTATTCTATTTCCGCTACACACCACAGCAACGCAA
ACAACCAGCAACTCTACTGACTCCG