EY663600

Overview
NameEY663600
Unique NameEY663600
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY663600 vs. ExPASy Swiss-Prot
Match: CIGR2_ORYSJ (Chitin-inducible gibberellin-responsive protein 2 OS=Oryza sativa subsp. japonica GN=CIGR2 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.761e-14
Identity = 56/178 (31.46%), Postives = 89/178 (50.00%), Query Frame = 3 
Query:  306 PIQEIEPYCLPQ-FQTVDHHLQYNDGGKGAHLSLQNSYEQYCTLESSSANGSYTIYNSPSTVTFSP-NGSPMSQQESQSYPPDLHHSPDNAYGSPMSASCITNDASDLKHKLRELESVMLGPXXXXXXXXXXTYQSGTTKAHQRWTAGDQFMGLLPRRXEHVLIACAKQIRDEXCWQI 833
            P     PY  P     V HH         A    Q +  +Y TL+SS   G    ++SPS+ +F+  +GSP+SQ++S S         D+  GSP+ ASC+T D +DLK KL++LE+VMLGP          +  +  +   ++W    + MG+     + +LIACA+ + ++  + I
Sbjct:   30 PQHPCHPYRAPSDTHVVPHHYGLKSHSPDAGYESQATPNKY-TLDSSEGAGCMR-HDSPSSQSFTTRSGSPLSQEDSHS---------DSTDGSPVGASCVTEDPNDLKQKLKDLEAVMLGPDSEIVNSLENSVANQLSLEPEKWV---RMMGIPRGNLKELLIACARAVEEKNSFAI 193
The following BLAST results are available for this feature:
BLAST of EY663600 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CIGR2_ORYSJ1.761e-1431.46Chitin-inducible gibberellin-responsive protein 2 ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-056-H09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY663600 ID=EY663600; Name=EY663600; organism=Citrus sinensis; type=EST; length=860bp
CCACGCGTCCGAGCTCTGCTTCCCAGTTCCTGATTCCTATCTATCTATCT
ATCTATGCTTCGCTCTCTTCCCCACTCTCTCTCTCTCTTCCTATTTCAAC
TTACAAAGGCTTTTGCTTTGGTCTTTTGGAGTGAACTTAACGAAAATTGA
GATTCCTTAAACAAGTCTTGATTGTTGGTTATCGTTGTGCTGTGGAAATC
CTCCAGAAGTTTCCTGCAGAGGATAGTAGAGATCATGACTTCTGTGTAAT
GCAAGAATCATAGCAACATATAAATTCGAGCATGTCAGGCAGATTGTACT
ATCAACCAATACAAGAAATCGAGCCATACTGCTTGCCACAGTTCCAAACT
GTGGATCATCATCTGCAGTACAATGACGGTGGCAAAGGAGCCCATCTCTC
TCTTCAGAATTCTTATGAACAGTACTGTACTCTGGAATCGTCTTCAGCAA
ATGGTAGCTACACCATATATAATTCTCCGTCAACTGTCACTTTCTCTCCC
AATGGAAGCCCAATGTCACAGCAGGAGTCTCAGTCATACCCTCCTGATCT
GCACCATTCCCCTGACAATGCCTATGGCTCTCCTATGAGCGCCTCCTGCA
TAACCAATGATGCAAGTGACCTGAAGCACAAGCTGAGAGAACTGGAATCT
GTAATGTTGGGACCAGATTCTGATATTATCGATGGAATTGATAGTACCTA
TCAGAGTGGGACAACAAAGGCTCACCAGAGATGGACAGCGGGAGACCAAT
TTATGGGGCTATTGCCAAGGAGATTNGAACATGTGCTCATTGCCTGTGCA
AAGCAGATCAGAGATGAGTTNTGCTGGCAAATTGGTGATGATGAATACGC
CAATGTGTCA
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