EY744470

Overview
NameEY744470
Unique NameEY744470
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1035
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY744470_ssr750 microsatellite EY744470_ssr750:750..759. BLAST: Citrus ESTs to Prunus persica proteins V1
EY744470_ssr858 microsatellite EY744470_ssr858:858..869. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY744470 vs. ExPASy Swiss-Prot
Match: SR542_SOLLC (Signal recognition particle 54 kDa protein 2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 8.701e-62
Identity = 119/142 (83.80%), Postives = 124/142 (87.32%), Query Frame = 2
Query:   14 TKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXSVSAGAVIVTKTDGNGWGGEAL 439
            TKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPV+IAV+GVETFKKENCDLIIVDTSGRHKQEAALFEEMRQV+EAT PDLVIFVMDSSIG            SV+ GAVIVTK DG+  GG AL
Sbjct:  119 TKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVDGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIVTKMDGHAKGGGAL 260          
BLAST of EY744470 vs. ExPASy Swiss-Prot
Match: SR543_ARATH (Signal recognition particle 54 kDa protein 3 OS=Arabidopsis thaliana GN=SRP-54C PE=2 SV=2)

HSP 1 Score: 232.646 bits (592), Expect = 2.799e-60
Identity = 116/142 (81.69%), Postives = 124/142 (87.32%), Query Frame = 2
Query:   14 TKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXSVSAGAVIVTKTDGNGWGGEAL 439
            TKYAYYHQKKG+KPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPV+IAVEGV+TFKKENCDLIIVDTSGRHKQEA+LFEEMRQV+EAT PDLVIFVMDSSIG            SV+ GAVI+TK DG+  GG AL
Sbjct:  119 TKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDTFKKENCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHAKGGGAL 260          
BLAST of EY744470 vs. ExPASy Swiss-Prot
Match: SR541_SOLLC (Signal recognition particle 54 kDa protein 1 OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 4.042e-59
Identity = 117/143 (81.82%), Postives = 123/143 (86.01%), Query Frame = 2
Query:   14 TKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGS-YTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXSVSAGAVIVTKTDGNGWGGEAL 439
            TKYAY+HQK+GWKPALVCADTFRAGAFDQLKQNATKAKIPFYGS YTESDPV+IAV+GVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEA  PDLVIFVMDSSIG            SV+ GAVIVTK DG+  GG AL
Sbjct:  119 TKYAYHHQKRGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSSYTESDPVKIAVDGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEAQKPDLVIFVMDSSIGQAAFDQAQAFRQSVAVGAVIVTKMDGHAKGGGAL 261          
BLAST of EY744470 vs. ExPASy Swiss-Prot
Match: SR541_ARATH (Signal recognition particle 54 kDa protein 1 OS=Arabidopsis thaliana GN=SRP-54A PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.897e-57
Identity = 112/142 (78.87%), Postives = 120/142 (84.51%), Query Frame = 2
Query:   14 TKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXSVSAGAVIVTKTDGNGWGGEAL 439
            TKYAYYHQKKG+K ALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPV+IAVEGV+ FKKE CDLIIVDTSGRHKQ A+LFEEMRQV+EAT PDLVIFVMDSSIG            +VS GAVI+TK DG+  GG AL
Sbjct:  119 TKYAYYHQKKGYKAALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDRFKKEKCDLIIVDTSGRHKQAASLFEEMRQVAEATEPDLVIFVMDSSIGQAAFEQAEAFKETVSVGAVIITKMDGHAKGGGAL 260          
BLAST of EY744470 vs. ExPASy Swiss-Prot
Match: SR542_ARATH (Signal recognition particle 54 kDa protein 2 OS=Arabidopsis thaliana GN=SRP-54B PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 3.783e-57
Identity = 109/142 (76.76%), Postives = 121/142 (85.21%), Query Frame = 2
Query:   14 TKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXSVSAGAVIVTKTDGNGWGGEAL 439
            TKYAYYHQKKG+KPALVCADTFRAGAFDQLKQNATK+KIP+YGSYT SDPV+IAVEGV+ FKKENCDLIIVDTSGRHKQ+A+LFEEMRQ+SEAT PDLVIFVMDSSIG            +V+ GAVI+TK DG+  GG  L
Sbjct:  119 TKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKSKIPYYGSYTGSDPVKIAVEGVDRFKKENCDLIIVDTSGRHKQQASLFEEMRQISEATKPDLVIFVMDSSIGQTAFEQARAFKQTVAVGAVIITKMDGHAKGGGTL 260          
BLAST of EY744470 vs. ExPASy Swiss-Prot
Match: SR542_HORVU (Signal recognition particle 54 kDa protein 2 OS=Hordeum vulgare GN=SRP54-2 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 3.203e-56
Identity = 109/142 (76.76%), Postives = 119/142 (83.80%), Query Frame = 2
Query:   14 TKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXSVSAGAVIVTKTDGNGWGGEAL 439
            TKYAYYHQ+KG+KP+LVCADTFRAGAFDQLKQNATKAKIPFYGSY ESDPV+IAVEG+E F+KEN DLII+DTSGRHKQEAALFEEMRQV+EAT PDLVIFVMD SIG            S S GAVI+TK DG+  GG AL
Sbjct:  119 TKYAYYHQRKGFKPSLVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGLERFRKENSDLIIIDTSGRHKQEAALFEEMRQVAEATKPDLVIFVMDGSIGQAAFDQAQAFKQSASVGAVIITKLDGHAKGGGAL 260          
BLAST of EY744470 vs. ExPASy Swiss-Prot
Match: SR541_HORVU (Signal recognition particle 54 kDa protein 1 OS=Hordeum vulgare GN=SRP54-1 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 3.203e-56
Identity = 109/142 (76.76%), Postives = 119/142 (83.80%), Query Frame = 2
Query:   14 TKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXSVSAGAVIVTKTDGNGWGGEAL 439
            TKYAYYHQ+KG+KP+LVCADTFRAGAFDQLKQNATKAKIPFYGSY ESDPV+IAVEG+E F+KEN DLII+DTSGRHKQEAALFEEMRQV+EAT PDLVIFVMD SIG            S S GAVI+TK DG+  GG AL
Sbjct:  119 TKYAYYHQRKGFKPSLVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGLERFRKENSDLIIIDTSGRHKQEAALFEEMRQVAEATKPDLVIFVMDGSIGQAAFDQAQAFKQSASVGAVIITKLDGHAKGGGAL 260          
BLAST of EY744470 vs. ExPASy Swiss-Prot
Match: SR543_HORVU (Signal recognition particle 54 kDa protein 3 OS=Hordeum vulgare GN=SRP54-3 PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 6.678e-54
Identity = 106/142 (74.65%), Postives = 117/142 (82.39%), Query Frame = 2
Query:   14 TKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXSVSAGAVIVTKTDGNGWGGEAL 439
            TKYA+YHQ+KG+KP+LVCADTFRAGAFDQLKQNATKAKIPFYGSY ESDPV+IAVEG+E F++E  DLII+DTSGRH QEAALFEEMRQV+EAT PDLVIFVMD SIG            S S GAVIVTK DG+  GG AL
Sbjct:  118 TKYAHYHQRKGFKPSLVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGLEKFRQEKSDLIIIDTSGRHMQEAALFEEMRQVAEATKPDLVIFVMDGSIGQAAFDQAQAFKQSASVGAVIVTKLDGHAKGGGAL 259          
BLAST of EY744470 vs. ExPASy Swiss-Prot
Match: SRP54_MOUSE (Signal recognition particle 54 kDa protein OS=Mus musculus GN=Srp54 PE=1 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 1.349e-46
Identity = 93/142 (65.49%), Postives = 107/142 (75.35%), Query Frame = 2
Query:   14 TKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXSVSAGAVIVTKTDGNGWGGEAL 439
            +K AYY+Q+KGWK  L+CADTFRAGAFDQLKQNATKA+IPFYGSYTE DPV IA EGVE FK EN ++IIVDTSGRHKQE +LFEEM QVS A  PD +++VMD+SIG             V   +VIVTK DG+  GG AL
Sbjct:  119 SKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVSNAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGAL 260          
BLAST of EY744470 vs. ExPASy Swiss-Prot
Match: SRP54_GEOCY (Signal recognition particle 54 kDa protein OS=Geodia cydonium GN=SRP54 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 2.300e-46
Identity = 93/142 (65.49%), Postives = 109/142 (76.76%), Query Frame = 2
Query:   14 TKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXSVSAGAVIVTKTDGNGWGGEAL 439
            TK AY++QKKGWK  LVCADTFRAGAFDQLKQNATKA++PFYGSYTE DPV IA EGVE FK+++ ++IIVDTSGRHKQE +LFEEM QVS+A +PD +IFVMD +IG             V   +VIVTK DG+  GG AL
Sbjct:  118 TKLAYHYQKKGWKTCLVCADTFRAGAFDQLKQNATKARVPFYGSYTEMDPVVIAQEGVEKFKEDSFEVIIVDTSGRHKQEESLFEEMLQVSQAIDPDNIIFVMDGTIGQACESQARAFKEKVDVASVIVTKLDGHAKGGGAL 259          
The following BLAST results are available for this feature:
BLAST of EY744470 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
SR542_SOLLC8.701e-6283.80Signal recognition particle 54 kDa protein 2 OS=So... [more]
SR543_ARATH2.799e-6081.69Signal recognition particle 54 kDa protein 3 OS=Ar... [more]
SR541_SOLLC4.042e-5981.82Signal recognition particle 54 kDa protein 1 OS=So... [more]
SR541_ARATH2.897e-5778.87Signal recognition particle 54 kDa protein 1 OS=Ar... [more]
SR542_ARATH3.783e-5776.76Signal recognition particle 54 kDa protein 2 OS=Ar... [more]
SR542_HORVU3.203e-5676.76Signal recognition particle 54 kDa protein 2 OS=Ho... [more]
SR541_HORVU3.203e-5676.76Signal recognition particle 54 kDa protein 1 OS=Ho... [more]
SR543_HORVU6.678e-5474.65Signal recognition particle 54 kDa protein 3 OS=Ho... [more]
SRP54_MOUSE1.349e-4665.49Signal recognition particle 54 kDa protein OS=Mus ... [more]
SRP54_GEOCY2.300e-4665.49Signal recognition particle 54 kDa protein OS=Geod... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-008-H12-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744470 ID=EY744470; Name=EY744470; organism=Citrus sinensis; type=EST; length=1035bp
CCACGCGTCCGGTACAAAATATGCTTATTATCATCAAAAGAAAGGTTGGA
AACCGGCTTTAGTCTGTGCTGATACATTCAGAGCTGGTGCTTTTGATCAG
TTGAAGCAGAATGCCACCAAAGCTAAGATTCCATTTTATGGAAGCTACAC
AGAGTCTGATCCTGTGAGAATTGCAGTGGAAGGTGTGGAAACATTTAAAA
AGGAAAACTGTGATCTCATAATTGTTGATACCAGTGGTCGCCATAAACAG
GAAGCTGCTCTTTTTGAAGAGATGCGTCAAGTTTCTGAAGCAACGAATCC
AGATCTTGTTATATTTGTTATGGATAGCAGTATTGGTCAAGCCGCATTTG
ATCAAGCTCAAGCATTCAAGCAAAGTGTTTCTGCTGGAGCTGTGATTGTT
ACTAAAACGGATGGCAATGGGTGGGGTGGGGAAGCTCTTCGCGCCCACGC
CGCCCCCGCGCACTCCCCAGACCACCCCCAGCCGAGCGCAGACGTCTCAG
GGCCTGGTGCTCGCGCCGGCCAAAGGCCCCCCACCGATCACCTAAGCACG
AGAAGCTCGTCAAAGCGCTCCTCACAAAACAAAGGCCCCCACCCGAACCA
CGCCCCACACCCGCCGGGCCGCAACGGCGTACACTGCTCCCCACCAACCC
ACGGTCGGTCGTAACCCACGAAGACAGAACACCACAAAGACCACGGACAG
GCGACCGCAGCGACCGAAACCCTCGGTCCGCACGCGCCCGGCGCGCGACC
GCGCGCGCGCCGCGCACCCCCCAGCGGGCCTGCAGACCGACAGCGCCCAC
ACAGACGCGGCGGCGCGCACCGCAGCACGACAGCGCAAGGCGCCACACCC
CAGCTGAGCCGCCGCCGCCCGCAGGACGGGCCGCCCAACGCCTCGCGCCC
CTCCCCCCCGTCACGACACCTCCGCGGCGCCACCGATCCACCCTGCACCC
GCGGCCACGAGCCCCCGCCGCCCACCTCGGTGCAGCCGCTCGCCCCCGCC
CANCGACCCCCACCCCGGCTGCCGCCGCTGTGCCC
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