EY744457

Overview
NameEY744457
Unique NameEY744457
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length939
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY744457_ssr806 microsatellite EY744457_ssr806:806..817. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY744457 vs. ExPASy Swiss-Prot
Match: POP3_ARATH (Probable protein Pop3 OS=Arabidopsis thaliana GN=At3g17210 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.472e-13
Identity = 34/60 (56.67%), Postives = 46/60 (76.67%), Query Frame = 3 
Query:  303 GKDVTIDNPHHGFTHIFESTFESTEGVAENVYPPALVEYEYLFLTNLENALMFDYQPTTI 482
            GKDV+I+N H G+THIFESTFES E VAE +  PA VE+  +FL +L+  L+ DY+PT++
Sbjct:   48 GKDVSIENLHQGYTHIFESTFESKEAVAEYIAHPAHVEFATIFLGSLDKVLVIDYKPTSV 107
The following BLAST results are available for this feature:
BLAST of EY744457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
POP3_ARATH6.472e-1356.67Probable protein Pop3 OS=Arabidopsis thaliana GN=A... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C5-003-008-G11-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744457 ID=EY744457; Name=EY744457; organism=Citrus sinensis; type=EST; length=939bp
CCACGCGTCCGCGGACGCGTGGGCGGACCATGTGACGGACGCGTGGGCGG
ACGCGTGGGTGAATGTCCCTGATTTTAAGGGGATGATTGCGGAGTTAATC
CGCAGCTGCTGCGGATTGGAATTACTGGCTGTTAAGTATAAGTGGGTGTT
TACCATGTGCTTTACTTGTTGTGCTTTCAGAATTAAGCACAATCACAACA
GTTAGAAATATATAGGCCGAAACAAATAGTCAAGGGTGTATCCACTTGTG
ATCAAATTTTTTTTTTTTTGGTTTTTTAATTTATTTTATGTGCTGCAACC
GGGGCAAGGATGTGACCATTGACAATCCTCATCATGGTTTCACTCATATT
TTTGAATCTACCTTTGAGAGCACAGAGGGTGTTGCAGAGAATGTATATCC
TCCAGCACTTGTTGAATACGAATACTTGTTCCTGACCAACTTGGAAAATG
CTCTCATGTTTGACTACCAACCGACCACAATACGTGTCTAATCTGCACTA
GTAGGGAACTGATCCCACTCCCAGCGCCTGATTATTCTATATTGTGCGCG
CTTGTTTGAGCCAACATTGGGCGGCCTCCTCCTGGAAGTCGAAATCTGCG
GCAGGCACACCCAAGAATTTACTGACACCAGCAACACGATCCGCCCCGAA
CCGTCAACAGCAATCCCCCCATACTCCAACATGCGCCAACGGGACGTCCA
ACAAAAGTCCCGACACTCAATCACGCGGCCGCAAAAAATAAACCAATGCC
ACAAATGAGAGCTCACCACGGTGCCCCGGCCAGACCAACCATCGCTCCGC
GAACCACAACAACAACAAGTCTACCAGTCCTCACCGACACCACCACAAGC
TACACCTAAACAGACATGCTGCCAGCCACAGCCCCCTCCACCTCGACAGA
CCTACCCCCAGCCCCGCCCACCCCCTGCCCCAACACCAC
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