EY744452

Overview
NameEY744452
Unique NameEY744452
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length901
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY744452 vs. ExPASy Swiss-Prot
Match: DHX37_HUMAN (Probable ATP-dependent RNA helicase DHX37 OS=Homo sapiens GN=DHX37 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 4.856e-12
Identity = 30/57 (52.63%), Postives = 40/57 (70.18%), Query Frame = 3 
Query:  105 QFPVTVYFSQRTEIGDYIGQAYKKVVSIRERLPQGGLRVFVTGEREGEYLCSMLRKA 275
            QFPVTV+F++RT + DY G+ ++KV  I   LP GG+ VF+TG+ E   LC  LRKA
Sbjct:  436 QFPVTVHFNKRTPLEDYSGECFRKVCKIHRMLPAGGILVFLTGQAEVHALCRRLRKA 492

HSP 2 Score: 26.5646 bits (57), Expect = 4.856e-12
Identity = 13/24 (54.17%), Postives = 17/24 (70.83%), Query Frame = 2 
Query:   26 ATLQAEDFISGGRLF-RNPPIIEV 94
            ATL+ EDF    RLF + PP+I+V
Sbjct:  409 ATLRVEDFTQNPRLFAKPPPVIKV 432
The following BLAST results are available for this feature:
BLAST of EY744452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DHX37_HUMAN4.856e-1252.63Probable ATP-dependent RNA helicase DHX37 OS=Homo ... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C5-003-008-G06-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744452 ID=EY744452; Name=EY744452; organism=Citrus sinensis; type=EST; length=901bp
CCACGCGTCCGCGGACGCGTGGGGCGCTACCTTGCAAGCAGAGGACTTTA
TTTCTGGAGGAAGATTATTCCGTAATCCTCCTATTATAGAAGTCCCTACC
ACCACAGTTTCCAGTGACTGTATATTTTTCCCAGAGAACGGAGATTGGTG
ATTATATTGGCCAAGCCTACAAAAAAGTCGTGTCCATTCGCGAGAGGCTG
CCACAAGGTGGCCTACGTGTATTTGTCACTGGGGAGAGGGAGGGAGAATA
CTTATGCTCTATGTTACGTAAAGCTTCCAAACAGCTGCTGGTATATTCTT
CTAAAGAGAATAAAGGGAATCAGGCAGTTGCTGACTCTGAACCCAATGCC
ACCAAGGACATTATTATGAGTAGAGATCAATGAAGCATTTGAGATTCAAG
GATATTCAACTGAGCAGCATACTGACAGGATTAGTTCTTATGATGAAGAT
CGGTCTGATATTGAGGACAATGAGTTGGATGCTTCGTCTGATTCCAAAAC
TGAAAACGAAACAGAAATACTTGGGGAGGATGAAAAATGGATGGAACATG
ATGCCCAGTGGATGGGGATGATCCGGAAAACCCGTTAAAAGAAAACTGGA
AGACGTGGGTCTCCATACCGTGGCTATTGAGGCTTCCCGCCGAAAATGGC
ACACCCGCCCTAGCTGTCCAATTGGAGCCGGGCACTCCTGGGTAGGCCAA
CACATGGCGCGCACACTGCTCCCACTCCCCCCCTCCCTCCAATCCAATGG
TGAAAAACCATTCCTTCCCTCGCTCGTGCCCAAAACACTCACACACCCCA
ACCTCCCCCCCGCTCCCTCTACCTGCACCCCGCGCACACCTCCACCCGCC
AGCGAGAAGACCCGCCAAACCCAACCCGACCCACCACTATTAACCCACAT
C
back to top