EY744439

Overview
NameEY744439
Unique NameEY744439
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length909
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1300 contig Csv1_Contig1300:90..996. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY744439 vs. ExPASy Swiss-Prot
Match: SERA_ARATH (D-3-phosphoglycerate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At1g17745 PE=1 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 3.488e-40
Identity = 95/167 (56.89%), Postives = 117/167 (70.06%), Query Frame = 3
Query:  201 KPTVLIAEKLGQAGLDLLQEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTRCGC*AWDRAFGCHG*KCRPG*CLC*GLERGK--GTNMGGSPFVGKTLMNLGFGKVETKLAPLAKGLGM 695
            KP +L+ EKLG+AG++LL+EF +VDC+Y+LSPE+L  K++  DALIVRSGTKV R+VFE++ GRLKVVGRAGVGIDNVDL AATE GCLVVNAPTANT     A +          R        ++ GK   +   G   VGKTL  +GFGKV T++A  AKGLGM
Sbjct:   82 KPRILVTEKLGEAGVNLLREFGDVDCSYDLSPEDLKKKVAESDALIVRSGTKVTREVFEAAKGRLKVVGRAGVGIDNVDLQAATEHGCLVVNAPTANTVA---AAEHGIALLASMARNVAQADASIKAGKWERSKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGM 245          
BLAST of EY744439 vs. ExPASy Swiss-Prot
Match: SERA_METJA (D-3-phosphoglycerate dehydrogenase OS=Methanocaldococcus jannaschii GN=serA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.009e-20
Identity = 65/165 (39.39%), Postives = 92/165 (55.76%), Query Frame = 3
Query:  210 VLIAEKLGQAGLDLLQEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTRCGC*AWDRAFGCHG*KCRPG*CLC*GLERGK--GTNMGGSPFVGKTLMNLGFGKVETKLAPLAKGLGMD 698
            +L+ + L +  + +L+E   V+ A  L+ EEL  KI   D L+VRSGTKV RDV E  A +LKV+GRAGVG+DN+D+ AATE G +VVNAP A++       +   G      R        L+RG+       G    GKTL  +G G++  ++   AK  GM+
Sbjct:    4 ILVTDPLHEDAIKILEEVGEVEVATGLTKEELLEKIKDADVLVVRSGTKVTRDVIEK-AEKLKVIGRAGVGVDNIDVEAATEKGIIVVNAPDASSIS---VAELTMGLMLAAARNIPQATASLKRGEWDRKRFKGIELYGKTLGVIGLGRIGQQVVKRAKAFGMN 164          
BLAST of EY744439 vs. ExPASy Swiss-Prot
Match: SERA_ARCFU (D-3-phosphoglycerate dehydrogenase OS=Archaeoglobus fulgidus GN=serA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 8.258e-19
Identity = 41/96 (42.71%), Postives = 66/96 (68.75%), Query Frame = 3
Query:  210 VLIAEKLGQAGLDLLQEFA-NVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANT 494
            VL+AE + +  +D +++    V+    +S EEL  ++   +A++VRS TKV+ +V ++ A  LK++GRAGVG+DN+D+ AAT+ G +VVNAP  NT
Sbjct:    3 VLVAEPISEEAIDYMRKNGLEVEVKTGMSREELIREVPKYEAIVVRSQTKVDAEVIQA-AKNLKIIGRAGVGVDNIDINAATQRGIVVVNAPGGNT 97          

HSP 2 Score: 36.5798 bits (83), Expect = 8.258e-19
Identity = 17/37 (45.95%), Postives = 25/37 (67.57%), Query Frame = 1
Query:  496 VAAAEHGIALLGAMAKNVAQADASVKAWKGEKEQIWG 606
            ++ AEH IAL+ A A+ + QAD SVK  K E+++  G
Sbjct:   98 ISTAEHAIALMLAAARKIPQADRSVKEGKWERKKFMG 134          
BLAST of EY744439 vs. ExPASy Swiss-Prot
Match: SERA_METTH (D-3-phosphoglycerate dehydrogenase OS=Methanobacterium thermoautotrophicum GN=serA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.360e-18
Identity = 61/165 (36.97%), Postives = 91/165 (55.15%), Query Frame = 3
Query:  210 VLIAEKLGQAGLDLLQEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTRCGC*AWDRAFGCHG*KCRPG*CLC*GLERGK--GTNMGGSPFVGKTLMNLGFGKVETKLAPLAKGLGMD 698
            VLIA+ + + G+  L+E A V     ++PEEL   I   DA++VRS TKV R+V E+ A RLK++ RAGVG+DNVD+ AAT+ G +V+NAP + +       + + G      R        ++ GK       G    GKTL  +G G++ +++    K  GMD
Sbjct:    6 VLIADSINEKGISELEEVAEVVVNTTITPEELLDAIKDFDAIVVRSRTKVTREVIEA-APRLKIIARAGVGVDNVDVKAATDRGIMVINAPESTSIT---VAEHSIGLMLALARKIAIADRSVKEGKWEKNRFMGIELNGKTLGIIGMGRIGSQVVVRTKAFGMD 166          
BLAST of EY744439 vs. ExPASy Swiss-Prot
Match: SERA_MYCLE (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium leprae GN=serA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.257e-17
Identity = 45/96 (46.88%), Postives = 61/96 (63.54%), Query Frame = 3
Query:  204 PTVLIAEKLGQAGLDLLQEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTAN 491
            P VLIA+KL Q+ +  L +   V         +L   +   DAL+VRS T V+ +V  ++A +LK+V RAGVG+DNVD+ AAT  G LVVNAPT+N
Sbjct:    4 PVVLIADKLAQSTVAALGDQVEVRWVDGPDRTKLLAAVPEADALLVRSATTVDAEVL-AAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSN 98          

HSP 2 Score: 33.4982 bits (75), Expect = 3.257e-17
Identity = 16/30 (53.33%), Postives = 24/30 (80.00%), Query Frame = 1
Query:  499 AAAEHGIALLGAMAKNVAQADASVKA--WK 582
            +AAEH +ALL A ++ +A+ADAS++A  WK
Sbjct:  101 SAAEHALALLLAASRQIAEADASLRAHIWK 130          
BLAST of EY744439 vs. ExPASy Swiss-Prot
Match: SERA_SYNY3 (D-3-phosphoglycerate dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=serA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.059e-16
Identity = 56/164 (34.15%), Postives = 91/164 (55.49%), Query Frame = 3
Query:  210 VLIAEKLGQAGLDLLQEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTRCGC*AWDRAFGCHG*KCR--PG*CLC*GLERGKGTNMGGSPFVGKTLMNLGFGKVETKLAPLAKGLGM 695
            VL+++ + Q G+D+L++ A VD    LS  E+   +   DA+++RS TKV   + ++ + +LK++GRAGVG+DN+D+ AAT  G +VVN+P  NT     A + A        R  P         + +     G+    KTL  +G GK+ + +A +AK +GM
Sbjct:   32 VLVSDSIDQVGIDILKQVAQVDVKTGLSEAEIIDIVPEYDAIMLRSATKVTEKIIQAGS-QLKIIGRAGVGVDNIDVPAATRQGIVVVNSPEGNTIA---AAEHALAMMMALARHIPDANKSVKESKWERKQFIGTEVYKKTLGVVGLGKIGSHVAGVAKAMGM 191          
BLAST of EY744439 vs. ExPASy Swiss-Prot
Match: SERA_MYCTU (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium tuberculosis GN=serA PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.663e-15
Identity = 44/96 (45.83%), Postives = 61/96 (63.54%), Query Frame = 3
Query:  204 PTVLIAEKLGQAGLDLLQEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTAN 491
            P VLIA+KL  + +  L +   V        ++L   +   DAL+VRS T V+ +V  ++A +LK+V RAGVG+DNVD+ AAT  G LVVNAPT+N
Sbjct:    4 PVVLIADKLAPSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVL-AAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSN 98          

HSP 2 Score: 28.8758 bits (63), Expect = 1.663e-15
Identity = 14/30 (46.67%), Postives = 21/30 (70.00%), Query Frame = 1
Query:  499 AAAEHGIALLGAMAKNVAQADASVK--AWK 582
            +AAEH +ALL A ++ +  ADAS++   WK
Sbjct:  101 SAAEHALALLLAASRQIPAADASLREHTWK 130          
BLAST of EY744439 vs. ExPASy Swiss-Prot
Match: SERA_MYCBO (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium bovis GN=serA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.663e-15
Identity = 44/96 (45.83%), Postives = 61/96 (63.54%), Query Frame = 3
Query:  204 PTVLIAEKLGQAGLDLLQEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTAN 491
            P VLIA+KL  + +  L +   V        ++L   +   DAL+VRS T V+ +V  ++A +LK+V RAGVG+DNVD+ AAT  G LVVNAPT+N
Sbjct:    4 PVVLIADKLAPSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVL-AAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSN 98          

HSP 2 Score: 28.8758 bits (63), Expect = 1.663e-15
Identity = 14/30 (46.67%), Postives = 21/30 (70.00%), Query Frame = 1
Query:  499 AAAEHGIALLGAMAKNVAQADASVK--AWK 582
            +AAEH +ALL A ++ +  ADAS++   WK
Sbjct:  101 SAAEHALALLLAASRQIPAADASLREHTWK 130          
BLAST of EY744439 vs. ExPASy Swiss-Prot
Match: SERA_PONAB (D-3-phosphoglycerate dehydrogenase OS=Pongo abelii GN=PHGDH PE=2 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 1.927e-14
Identity = 64/165 (38.79%), Postives = 87/165 (52.73%), Query Frame = 3
Query:  210 VLIAEKLGQAGLDLLQEFA-NVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTRCGC*AWDRAFGCHG*KCRPG*CLC*GLERGK--GTNMGGSPFVGKTLMNLGFGKVETKLAPLAKGLGM 695
            VLI++ L      +LQ+    V    NLS EEL  ++  C+ LIVRS TKV  DV  ++A +L+VVGRAG G+DNVDL AAT  G LV+N P  N+     A +   G      R        ++ GK       G+   GKTL  LG G++  ++A   + LGM
Sbjct:    9 VLISDSLDPCCRKILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTADVI-NAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLS---AAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGREVAIRMQSLGM 169          
BLAST of EY744439 vs. ExPASy Swiss-Prot
Match: SERA_PANTR (D-3-phosphoglycerate dehydrogenase OS=Pan troglodytes GN=PHGDH PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.287e-14
Identity = 63/165 (38.18%), Postives = 86/165 (52.12%), Query Frame = 3
Query:  210 VLIAEKLGQAGLDLLQEFA-NVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTRCGC*AWDRAFGCHG*KCRPG*CLC*GLERGK--GTNMGGSPFVGKTLMNLGFGKVETKLAPLAKGLGM 695
            VLI++ L      +LQ+    V    NLS EEL  ++  C+ LIVRS TKV  DV  ++A +L+VVGRAG G+DNVDL AAT  G LV+N P  N+     A +   G      R        ++ GK       G+   GKTL  LG G++  ++A   +  GM
Sbjct:    9 VLISDSLDPCCRKILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTADVI-NAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLS---AAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGREVATRMQSFGM 169          
The following BLAST results are available for this feature:
BLAST of EY744439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
SERA_ARATH3.488e-4056.89D-3-phosphoglycerate dehydrogenase, chloroplastic ... [more]
SERA_METJA4.009e-2039.39D-3-phosphoglycerate dehydrogenase OS=Methanocaldo... [more]
SERA_ARCFU8.258e-1942.71D-3-phosphoglycerate dehydrogenase OS=Archaeoglobu... [more]
SERA_METTH8.360e-1836.97D-3-phosphoglycerate dehydrogenase OS=Methanobacte... [more]
SERA_MYCLE3.257e-1746.88D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
SERA_SYNY32.059e-1634.15D-3-phosphoglycerate dehydrogenase OS=Synechocysti... [more]
SERA_MYCTU1.663e-1545.83D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
SERA_MYCBO1.663e-1545.83D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
SERA_PONAB1.927e-1438.79D-3-phosphoglycerate dehydrogenase OS=Pongo abelii... [more]
SERA_PANTR3.287e-1438.18D-3-phosphoglycerate dehydrogenase OS=Pan troglody... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-008-F05-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744439 ID=EY744439; Name=EY744439; organism=Citrus sinensis; type=EST; length=909bp
ATACGACGCCGCTTTAACCACCCCGAAAAATGGCCACGTCAGCAGCCTCC
TACGCTGCCTCCCTCCGTCAGCCTTCCCTCAAGCTATCACTGTCTTCCAA
ACAGTCTCTTTCCCCTCTATTCTCCGTCTCCTTCAACCGCAAGCGGGCCC
CGCCGCGGCTCGTAATAATCGCATCCGCCGCCGCTGACGGCATCTCCTCA
AAACCGACCGTTTTGATCGCCGAGAAGCTCGGACAGGCCGGCTTGGATCT
TCTTCAAGAGTTCGCCAACGTGGACTGCGCATACAACTTGTCGCCAGAGG
AGCTCTGCACGAAGATCTCGCTGTGCGACGCGCTGATCGTGCGCAGCGGC
ACGAAGGTCAATCGCGACGTGTTCGAGTCGTCAGCTGGAAGGTTGAAGGT
CGTTGGGAGAGCCGGTGTTGGTATTGATAATGTGGATCTGGCTGCGGCTA
CTGAGTTTGGTTGCTTGGTTGTGAACGCGCCGACGGCGAATACCCGTTGC
GGCTGCTGAGCATGGGATCGCGCTTTTGGGTGCCATGGCTAAAAATGTCG
CCCAGGCTGATGCCTCTGTTAAGGCTTGGAAAGGGGAAAAGGAACAAATA
TGGGGGGGTCTCCCTTTGTGGGAAAAACATTGATGAATTTGGGATTCGGA
AAAGTGGAAACAAAACTGGCTCCACTTGCCAAGGGTCTAGGGATGGATGG
CAATTGCACAAAAACCACATGACACCGCCTGAACCGGGTCCTTGCCAGCG
AGGGGAACACAGGGAACTTTTAGAAAACGAATAAGCAAACGGCTAAATTT
CAACATTTGGCATAACCACACTTAACCCCGGGCAAGAACAAGCATGGCCA
CAGGGAGGAAAAGTCTGGGGAAGAAAAGACAAAAAAGGGGCGAGAAACAT
ACAAAAGAG
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