EY744416

Overview
NameEY744416
Unique NameEY744416
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1020
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig303 contig Csv1_Contig303:426..1445. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY744416 vs. ExPASy Swiss-Prot
Match: Y1301_ARATH (Uncharacterized membrane protein At1g63010 OS=Arabidopsis thaliana GN=At1g63010 PE=1 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 6.976e-72
Identity = 136/205 (66.34%), Postives = 162/205 (79.02%), Query Frame = 1 
Query:    7 VREDGDQEYDGSDETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNMFEDRQILLASEIMVCIGILFSFHVLIPYSVPQYVCSGLVLFVFAEVLEGVNXXXXXXXXXXXXXXGTYNGGLLSTKAGTIARVIADGTFTLVGFLGPNQSLECHSTP 621
            ++ + ++E D S+E+ E+SH PANS   AYRLLTPSVKVQLLIYFMLKY MEILLSESSV+T+YYF W+T +VAIFLACLGLTVLP+NI+VGSYISNMFEDRQILL SEI+V +GILFSF++ +PY+VPQYV SGL++FV AEVLEGVN              GTYNGGLLST+AGT+ARV+AD T TL G+LG    L     P
Sbjct:  473 IKPEDEEECDESEESPEDSHKPANSFIEAYRLLTPSVKVQLLIYFMLKYSMEILLSESSVITSYYFSWTTSSVAIFLACLGLTVLPINILVGSYISNMFEDRQILLTSEIIVFLGILFSFNLFVPYTVPQYVISGLIMFVAAEVLEGVNLSLLSRVMSSRLSKGTYNGGLLSTEAGTLARVVADATITLGGYLGRGHLLNATLLP 677
The following BLAST results are available for this feature:
BLAST of EY744416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1301_ARATH6.976e-7266.34Uncharacterized membrane protein At1g63010 OS=Arab... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C5-003-008-D05-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744416 ID=EY744416; Name=EY744416; organism=Citrus sinensis; type=EST; length=1020bp
CCACGCGTCCGTGAAGATGGTGACCAAGAATATGACGGAAGTGATGAAAC
TTCTGAGGAATCTCATCCACCAGCCAATTCAATTAGATCAGCATACAGAC
TACTTACGCCCTCTGTAAAGGTTCAATTGTTGATATATTTTATGCTCAAG
TACGTGATGGAGATTTTACTCTCTGAATCTAGCGTTGTTACTACATACTA
TTTTGGATGGTCCACGGGCGCGGTCGCAATTTTTCTTGCATGTCTTGGCC
TTACCGTTCTTCCAGTAAACATCATTGTTGGCAGCTATATTAGCAACATG
TTCGAAGATAGGCAAATTTTATTGGCTTCTGAAATCATGGTCTGTATAGG
CATACTCTTTAGCTTCCATGTGCTCATCCCCTACTCCGTTCCACAATATG
TCTGCTCAGGACTCGTCTTGTTTGTTTTTGCTGAAGTACTTGAAGGCGTC
AACTTGTCACTACTATCTCGGGTGATGTCTTCCAGGCTTTCTCGCGGAAC
GTACAATGGCGGGTTACTTTCAACAAAAGCTGGGACAATTGCTCGGGTCA
TCGCGGATGGGACATTTACTCTGGTTGGGTTCTTGGGCCCAAACCAATCT
CTTGAATGTCACTCTACTCCCTTTCATGGTTTGGCTGTGGAGCTTTCCTT
TAATCCGCTAACTTTTCCTTAACCTACAAATTCTTCTCTTTTGATCTATC
AAGGGTGCTAATATTAAGCCTTAATTCTTTCCTCCCTCCCCCCCCAAATT
TAAAATTTTCCCTCCCCTTATTCTTTCTGTTGGATTATTGGGACCTTGAC
CAACAAAATCAAAAAATAAGGGGCATTGAATTTTTTTTTCTCCCATTGGG
CTTAAAAAATTTCTTCCCCGGGTCCCCCCAAATAACGGGCCCAAAAATAT
TGGGCAAATTCCCCCACCCTCCCCGAGAAAGGTTTCCTCCCGCGCTATTT
ACCCCCTTGGTGTTCCCCCCCGGCGAAGAGAAAAAAAACAAAAAGACATA
AAAAAAAAAAAAAAAAACAA
back to top