EY744400

Overview
NameEY744400
Unique NameEY744400
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length930
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744400 vs. ExPASy Swiss-Prot
Match: MTHR1_ARATH (Methylenetetrahydrofolate reductase 1 OS=Arabidopsis thaliana GN=MTHFR1 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.954e-35
Identity = 68/90 (75.56%), Postives = 77/90 (85.56%), Query Frame = 1
Query:   13 PFISFMAVNKEGNWKANVNQTDVNAVTWGVFRAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVHSSYYLVGFGD 282
            P I++MAVNK  NW +N  ++DVNAVTWGVF AKE+IQPT+VDPASFKVWKDEAFEIWSRSWA+LYPE D SRKLLEEV +SYYLV   D
Sbjct:  490 PSITYMAVNKSENWVSNTGESDVNAVTWGVFPAKEVIQPTIVDPASFKVWKDEAFEIWSRSWANLYPEDDPSRKLLEEVKNSYYLVSLVD 579          
BLAST of EY744400 vs. ExPASy Swiss-Prot
Match: MTHR2_ARATH (Methylenetetrahydrofolate reductase 2 OS=Arabidopsis thaliana GN=MTHFR2 PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 3.612e-32
Identity = 65/86 (75.58%), Postives = 71/86 (82.56%), Query Frame = 1
Query:   13 PFISFMAVNKEGNWKANVNQTDVNAVTWGVFRAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVHSSYYLV 270
            P I++MAVNK   W +N  Q DVNAVTWGVF AKEIIQPT+VDPASF VWKDEAFE WSRSWA+LYPE D SR LLEEV +SYYLV
Sbjct:  490 PSITYMAVNKGEQWVSNTAQADVNAVTWGVFPAKEIIQPTIVDPASFNVWKDEAFETWSRSWANLYPEADPSRNLLEEVKNSYYLV 575          
BLAST of EY744400 vs. ExPASy Swiss-Prot
Match: MTHR1_MAIZE (Methylenetetrahydrofolate reductase 1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 4.133e-28
Identity = 57/90 (63.33%), Postives = 71/90 (78.89%), Query Frame = 1
Query:   13 PFISFMAVNKEGNWKANVNQTDVNAVTWGVFRAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVHSSYYLVGFGD 282
            P ++++AVNK+G   +N++   VNAVTWGVF  KEIIQPTVVD ASF VWKDEAFEIW+R W  ++PEGDSSR+LLE+V  +YYLV   D
Sbjct:  490 PSLTYIAVNKDGETFSNISPNAVNAVTWGVFPGKEIIQPTVVDHASFMVWKDEAFEIWTRGWGCMFPEGDSSRELLEKVQKTYYLVSLVD 579          
BLAST of EY744400 vs. ExPASy Swiss-Prot
Match: MTHR_ORYSJ (Probable methylenetetrahydrofolate reductase OS=Oryza sativa subsp. japonica GN=Os03g0815200 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.203e-27
Identity = 56/90 (62.22%), Postives = 71/90 (78.89%), Query Frame = 1
Query:   13 PFISFMAVNKEGNWKANVNQTDVNAVTWGVFRAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVHSSYYLVGFGD 282
            P ++++AVNK+G   +N+    VNAVTWGVF  KEI+QPTVVD ASF VWKDEAFEIWS+ WA L+PEGDSSR++L++V  SY+LV   D
Sbjct:  490 PSLTYIAVNKDGESFSNIPTNAVNAVTWGVFPGKEIVQPTVVDSASFMVWKDEAFEIWSKGWACLFPEGDSSREILDKVQKSYFLVSLVD 579          
BLAST of EY744400 vs. ExPASy Swiss-Prot
Match: MTHR_MACFA (Methylenetetrahydrofolate reductase OS=Macaca fascicularis GN=MTHFR PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.020e-18
Identity = 41/88 (46.59%), Postives = 55/88 (62.50%), Query Frame = 1
Query:   19 ISFMAVNKEGNWKANVNQTDVNAVTWGVFRAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVHSSYYLVGFGD 282
            +++  VN +G    N  +   NAVTWG+F  +EIIQPTVVDP SF  WKDEAF +W   W  LY E   SR +++ +H +Y+LV   D
Sbjct:  536 VNYHLVNVKGENITNAPELQPNAVTWGIFPGREIIQPTVVDPISFMFWKDEAFALWIEQWGKLYEEESPSRTIIQYIHDNYFLVNLVD 623          
BLAST of EY744400 vs. ExPASy Swiss-Prot
Match: MTHR_HUMAN (Methylenetetrahydrofolate reductase OS=Homo sapiens GN=MTHFR PE=1 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 1.020e-18
Identity = 41/88 (46.59%), Postives = 55/88 (62.50%), Query Frame = 1
Query:   19 ISFMAVNKEGNWKANVNQTDVNAVTWGVFRAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVHSSYYLVGFGD 282
            +++  VN +G    N  +   NAVTWG+F  +EIIQPTVVDP SF  WKDEAF +W   W  LY E   SR +++ +H +Y+LV   D
Sbjct:  536 VNYHLVNVKGENITNAPELQPNAVTWGIFPGREIIQPTVVDPVSFMFWKDEAFALWIERWGKLYEEESPSRTIIQYIHDNYFLVNLVD 623          
BLAST of EY744400 vs. ExPASy Swiss-Prot
Match: MTHR_BOVIN (Methylenetetrahydrofolate reductase OS=Bos taurus GN=MTHFR PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.969e-18
Identity = 40/88 (45.45%), Postives = 55/88 (62.50%), Query Frame = 1
Query:   19 ISFMAVNKEGNWKANVNQTDVNAVTWGVFRAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVHSSYYLVGFGD 282
            +++  V+ +G    N  +   NAVTWG+F  +EIIQPTVVDP SF  WKDEAF +W   W  LY E   SR +++ +H +Y+LV   D
Sbjct:  535 VNYHIVDVKGENITNAPELQPNAVTWGIFPGREIIQPTVVDPVSFMFWKDEAFALWIEQWGKLYEEESPSRMIIQYIHDNYFLVNLVD 622          
BLAST of EY744400 vs. ExPASy Swiss-Prot
Match: MTHR_MOUSE (Methylenetetrahydrofolate reductase OS=Mus musculus GN=Mthfr PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.877e-18
Identity = 40/88 (45.45%), Postives = 55/88 (62.50%), Query Frame = 1
Query:   19 ISFMAVNKEGNWKANVNQTDVNAVTWGVFRAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVHSSYYLVGFGD 282
            +++  V+ +G    N  +   NAVTWG+F  +EIIQPTVVDP SF  WKDEAF +W   W  LY E   SR +++ +H +Y+LV   D
Sbjct:  535 VNYHIVDVKGENITNAPELQPNAVTWGIFPGREIIQPTVVDPISFMFWKDEAFALWIEQWGKLYEEESPSRMIIQYIHDNYFLVNLVD 622          
BLAST of EY744400 vs. ExPASy Swiss-Prot
Match: MTHR_CAEEL (Probable methylenetetrahydrofolate reductase OS=Caenorhabditis elegans GN=C06A8.1 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 3.629e-16
Identity = 38/89 (42.70%), Postives = 55/89 (61.80%), Query Frame = 1
Query:   19 ISFMAVNKEGNW-KANVNQTDVNAVTWGVFRAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVHSSYYLVGFGD 282
            +++ A+NK+  + K N  +T   AVTWGVF   EI QPTVVDP SF+ W+DEA+++W   W   YP+   S  +++ VH  + LV   D
Sbjct:  553 VNYHAINKDSTFDKTNSEETTPIAVTWGVFPGSEIAQPTVVDPLSFRAWRDEAYQMWMAQWGDFYPKESKSYGVIKAVHDEFRLVTLVD 641          
BLAST of EY744400 vs. ExPASy Swiss-Prot
Match: MTHR1_SCHPO (Methylenetetrahydrofolate reductase 1 OS=Schizosaccharomyces pombe GN=met9 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.093e-12
Identity = 40/101 (39.60%), Postives = 53/101 (52.48%), Query Frame = 1
Query:   19 ISFMAVNKEGNWKANVNQTDVNAVTWGVFRAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVHSSYYLVGFGDQ*LHSWGSLLLYF 321
            +S+   NK G+   N      NAVTWGVF  +EIIQPT+V+  SF  WKDEA+ +    WA+ Y     SRKLL  +   ++L    D    +  SL   F
Sbjct:  485 VSYFVTNKNGDLDTNSQYEIPNAVTWGVFPNREIIQPTIVESTSFLAWKDEAYSL-GMEWANAYSPDSISRKLLVSMMKEWFLCVIVDNDFQNGQSLFDVF 584          
The following BLAST results are available for this feature:
BLAST of EY744400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
MTHR1_ARATH5.954e-3575.56Methylenetetrahydrofolate reductase 1 OS=Arabidops... [more]
MTHR2_ARATH3.612e-3275.58Methylenetetrahydrofolate reductase 2 OS=Arabidops... [more]
MTHR1_MAIZE4.133e-2863.33Methylenetetrahydrofolate reductase 1 OS=Zea mays ... [more]
MTHR_ORYSJ1.203e-2762.22Probable methylenetetrahydrofolate reductase OS=Or... [more]
MTHR_MACFA1.020e-1846.59Methylenetetrahydrofolate reductase OS=Macaca fasc... [more]
MTHR_HUMAN1.020e-1846.59Methylenetetrahydrofolate reductase OS=Homo sapien... [more]
MTHR_BOVIN2.969e-1845.45Methylenetetrahydrofolate reductase OS=Bos taurus ... [more]
MTHR_MOUSE3.877e-1845.45Methylenetetrahydrofolate reductase OS=Mus musculu... [more]
MTHR_CAEEL3.629e-1642.70Probable methylenetetrahydrofolate reductase OS=Ca... [more]
MTHR1_SCHPO1.093e-1239.60Methylenetetrahydrofolate reductase 1 OS=Schizosac... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-008-B12-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744400 ID=EY744400; Name=EY744400; organism=Citrus sinensis; type=EST; length=930bp
CCACGCGTCCGTCCATTCATAAGCTTCATGGCTGTCAACAAAGAAGGAAA
CTGGAAAGCCAATGTTAATCAAACTGATGTGAATGCCGTAACTTGGGGGG
TCTTCCGAGCCAAGGAGATTATCCAACCGACTGTTGTTGACCCTGCCAGC
TTCAAGGTGTGGAAGGATGAGGCATTTGAAATTTGGTCAAGATCATGGGC
TTCATTGTACCCTGAGGGAGACTCATCAAGAAAATTGCTTGAAGAGGTGC
ACAGCAGCTATTATTTGGTCGGCTTCGGGGATCAATGATTACACTCATGG
GGATCTCTTTTGCTGTATTTCCCCACCTACACGCCAGCACACTGACCTCC
CTGGAACCCGCCTCCATCCCCCCATCGAGCATCCTCAACACCCACCCCCC
CAAAACACACACGACGCAAGACCGCGCCCCCCCACCGACCCAAACCAGCC
CACCACGAAGCCCAACTACACACGATACAACCACGTATCGAAACACACAT
CAAAGGCCGGGACCCCGCACCGCGACCGACCCGAGCCCGCCCCCCCCCAA
ACGGACCGCCCCGGCCCGACCCTTCTGCCCCCCCCACACTCTCCCCGACC
AACGCCGTCCCCCCTCACCACCACAAGACAGACCATATCGCAGACGCCAA
GCACGCGGCGCAGCCACCACCCCAACTACCCCCACCACCGCCGCCGGGCC
ACCCCCCCACGAGAAACCAACCACACCCACGCCAACCTCCGCACACTAAC
ACCCCACAGGGCCCCACCACTCACCCACACGACGAACCCGAACTCCCCTA
CCACCAGCAAGCAACGCACGCCCCCCAACCACACCCCGCCGTCACCCAGA
ACACGCCGGCCAGCACGACGGCGCACGGACCGCCACACGCGCGACCCCCA
CCACCCCGCTCCAACCCCACCCCCCCAACC
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