EY744346

Overview
NameEY744346
Unique NameEY744346
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1035
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY744346_ssr49 microsatellite EY744346_ssr49:49..66. BLAST: Citrus ESTs to Prunus persica proteins V1
EY744346_ssr35 microsatellite EY744346_ssr35:35..46. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY744346 vs. ExPASy Swiss-Prot
Match: RAB7_PRUAR (Ras-related protein Rab7 OS=Prunus armeniaca PE=2 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 2.369e-75
Identity = 139/155 (89.68%), Postives = 143/155 (92.26%), Query Frame = 1
Query:  142 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENXPRXVLGNKTDVDGGNSQVGAEKKAKGWCAFPREYPLF 606
            MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSF+NLNNWREEFLIQA+PSDPEN P  VLGNK DVDGGNS+V +EKKAK WCA     P F
Sbjct:    1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFENLNNWREEFLIQATPSDPENFPFVVLGNKIDVDGGNSRVVSEKKAKAWCASKGNIPYF 155          
BLAST of EY744346 vs. ExPASy Swiss-Prot
Match: RAB7_GOSHI (Ras-related protein Rab7 OS=Gossypium hirsutum GN=RAB7 PE=2 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 2.369e-75
Identity = 139/155 (89.68%), Postives = 143/155 (92.26%), Query Frame = 1
Query:  142 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENXPRXVLGNKTDVDGGNSQVGAEKKAKGWCAFPREYPLF 606
            MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQF+DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV+DVNVMKSFDNLNNWREEFLIQASPSDPEN P  VLGNK DVDGGNS+V +EKKAK WCA     P F
Sbjct:    1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFDDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVHDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKVDVDGGNSRVVSEKKAKAWCASKGNIPYF 155          
BLAST of EY744346 vs. ExPASy Swiss-Prot
Match: RAB7_CENCI (Ras-related protein Rab7 OS=Cenchrus ciliaris PE=2 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 7.621e-74
Identity = 136/155 (87.74%), Postives = 141/155 (90.97%), Query Frame = 1
Query:  142 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENXPRXVLGNKTDVDGGNSQVGAEKKAKGWCAFPREYPLF 606
            MASRRR LLKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN MKSFDNLNNWREEFLIQASPSDP+N P  +LGNK DVDGGNS+V +EKKAK WCA     P F
Sbjct:    1 MASRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVLLGNKVDVDGGNSRVVSEKKAKAWCASKGNIPYF 155          
BLAST of EY744346 vs. ExPASy Swiss-Prot
Match: RAB7_PEA (Ras-related protein Rab7 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 2.452e-72
Identity = 132/155 (85.16%), Postives = 140/155 (90.32%), Query Frame = 1
Query:  142 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENXPRXVLGNKTDVDGGNSQVGAEKKAKGWCAFPREYPLF 606
            M SRRR LLKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN +KSFDNLNNWREEFLIQA+PSDPEN P  V+GNK D+DGGNS+V +EKKA+ WCA     P F
Sbjct:    1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSVKSFDNLNNWREEFLIQANPSDPENFPFVVIGNKIDIDGGNSRVVSEKKARAWCAAKGNIPYF 155          
BLAST of EY744346 vs. ExPASy Swiss-Prot
Match: RAB7_MESCR (Ras-related protein Rab7A OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 2.537e-69
Identity = 126/155 (81.29%), Postives = 138/155 (89.03%), Query Frame = 1
Query:  142 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENXPRXVLGNKTDVDGGNSQVGAEKKAKGWCAFPREYPLF 606
            MASRRR LLK+IILGDSGVGKTSLMNQ+VN+KFSNQYKATIGADFLTKE+QFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL YDVNVMKSF++LN WREEFLIQASP+DP+N P  +LGNK DVDGG+ +V +EKKAK WC      P F
Sbjct:    1 MASRRRKLLKIIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKELQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLTYDVNVMKSFESLNRWREEFLIQASPADPDNFPFVLLGNKIDVDGGSGRVVSEKKAKAWCMSKGNIPYF 155          
BLAST of EY744346 vs. ExPASy Swiss-Prot
Match: RAB7_VIGAC (Ras-related protein Rab7 OS=Vigna aconitifolia PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.843e-65
Identity = 117/155 (75.48%), Postives = 132/155 (85.16%), Query Frame = 1
Query:  142 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENXPRXVLGNKTDVDGGNSQVGAEKKAKGWCAFPREYPLF 606
            M+ RRR LLKVI+LGD+GVGKTSLMNQYV++KFS QYKATIGADF+TKE+Q +DRL TLQIWDTAGQERFQSLGVAFYRGADCCVL YDVNVMKSFD L+NW EEFL QA+P DP + P  +LGNK D+DGGNS+V +EKKAK WCA     P F
Sbjct:    1 MSLRRRTLLKVIVLGDTGVGKTSLMNQYVHKKFSQQYKATIGADFVTKELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLAYDVNVMKSFDTLDNWHEEFLKQANPPDPRSFPFILLGNKIDIDGGNSRVVSEKKAKDWCASKGNIPYF 155          

HSP 2 Score: 26.1794 bits (56), Expect = 2.843e-65
Identity = 14/30 (46.67%), Postives = 17/30 (56.67%), Query Frame = 2
Query:  584 SQGNIPYL*NTAKKRFNE*TGFDSIPKNLL 673
            S+GNIPY   +AK+ FN    F  I K  L
Sbjct:  148 SKGNIPYFETSAKEDFNVDAAFLCIAKAAL 177          
BLAST of EY744346 vs. ExPASy Swiss-Prot
Match: RAB7_SOYBN (Ras-related protein Rab7 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 6.303e-65
Identity = 119/155 (76.77%), Postives = 131/155 (84.52%), Query Frame = 1
Query:  142 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENXPRXVLGNKTDVDGGNSQVGAEKKAKGWCAFPREYPLF 606
            M+ RRR LLKVI+LGDSGVGKTSLMNQYV++KFS QYKATIGADF+TKE+Q +DRL TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFD L NW EEFL QA+P DP   P  +LGNK D+DGGNS+V +EKKAK WCA     P F
Sbjct:    1 MSLRRRTLLKVIVLGDSGVGKTSLMNQYVHKKFSQQYKATIGADFVTKELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLENWHEEFLKQANPPDPRAFPFILLGNKIDIDGGNSRVVSEKKAKDWCAAKGNIPYF 155          

HSP 2 Score: 23.8682 bits (50), Expect = 6.303e-65
Identity = 12/30 (40.00%), Postives = 17/30 (56.67%), Query Frame = 2
Query:  584 SQGNIPYL*NTAKKRFNE*TGFDSIPKNLL 673
            ++GNIPY   +AK+ +N    F  I K  L
Sbjct:  148 AKGNIPYFETSAKEDYNVDAAFLCIAKAAL 177          
BLAST of EY744346 vs. ExPASy Swiss-Prot
Match: RAB7_ARATH (Ras-related protein Rab7 OS=Arabidopsis thaliana GN=RAB7 PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 5.124e-62
Identity = 114/147 (77.55%), Postives = 129/147 (87.76%), Query Frame = 1
Query:  142 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENXPRXVLGNKTDVDGGNSQVGAEKKAKGWCA 582
            M++RRR LLKVIILGDSGVGKTSLMNQYVN KFS QYKATIGADF+TKE+Q +DRL TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN +KSF++L+NW  EFL +ASP DP   P  +LGNK D+DGGNS+V +EKKA+ WCA
Sbjct:    1 MSTRRRTLLKVIILGDSGVGKTSLMNQYVNNKFSQQYKATIGADFVTKELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNHLKSFESLDNWHNEFLTRASPRDPMAFPFILLGNKVDIDGGNSRVVSEKKAREWCA 147          
BLAST of EY744346 vs. ExPASy Swiss-Prot
Match: YPTC5_CHLRE (GTP-binding protein YPTC5 OS=Chlamydomonas reinhardtii GN=YPTC5 PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 1.395e-59
Identity = 108/155 (69.68%), Postives = 130/155 (83.87%), Query Frame = 1
Query:  142 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENXPRXVLGNKTDVDGGNSQVGAEKKAKGWCAFPREYPLF 606
            M++++R LLKVIILGDSGVGKTSLMNQYV +KF+ +YKATIGADFLTKE++ +D+  T+QIWDTAGQERFQSLG AFYRGADCCVLV+DVN  KSFD+L+NWR+EF+IQA P DP+N P  VLGNK D +GG+S+  +EKKAK WCA     P F
Sbjct:    1 MSTKKRRLLKVIILGDSGVGKTSLMNQYVQKKFTKEYKATIGADFLTKEIEVDDKKVTMQIWDTAGQERFQSLGSAFYRGADCCVLVFDVNNAKSFDDLDNWRDEFIIQAGPPDPDNFPFMVLGNKIDENGGSSRQVSEKKAKAWCASKGSIPYF 155          
BLAST of EY744346 vs. ExPASy Swiss-Prot
Match: RAB7A_DICDI (Ras-related protein Rab-7A OS=Dictyostelium discoideum GN=rab7A PE=1 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 2.380e-59
Identity = 109/155 (70.32%), Postives = 131/155 (84.52%), Query Frame = 1
Query:  142 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENXPRXVLGNKTDVDGGNSQVGAEKKAKGWCAFPREYPLF 606
            MA+++++LLKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKE+  +DR+ T+QIWDTAGQERFQSLGVAFYRGADCCVL YDVNV K+F+NL++WR+EFLIQA P DP+N P  VLGNK D++  N +V ++K+A  WC      P F
Sbjct:    1 MATKKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKELMVDDRVVTMQIWDTAGQERFQSLGVAFYRGADCCVLCYDVNVAKTFENLDSWRDEFLIQAGPRDPDNFPFVVLGNKIDLE--NQRVVSQKRAASWCQSKGNIPYF 153          
The following BLAST results are available for this feature:
BLAST of EY744346 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB7_PRUAR2.369e-7589.68Ras-related protein Rab7 OS=Prunus armeniaca PE=2 ... [more]
RAB7_GOSHI2.369e-7589.68Ras-related protein Rab7 OS=Gossypium hirsutum GN=... [more]
RAB7_CENCI7.621e-7487.74Ras-related protein Rab7 OS=Cenchrus ciliaris PE=2... [more]
RAB7_PEA2.452e-7285.16Ras-related protein Rab7 OS=Pisum sativum PE=2 SV=... [more]
RAB7_MESCR2.537e-6981.29Ras-related protein Rab7A OS=Mesembryanthemum crys... [more]
RAB7_VIGAC2.843e-6575.48Ras-related protein Rab7 OS=Vigna aconitifolia PE=... [more]
RAB7_SOYBN6.303e-6576.77Ras-related protein Rab7 OS=Glycine max PE=2 SV=1[more]
RAB7_ARATH5.124e-6277.55Ras-related protein Rab7 OS=Arabidopsis thaliana G... [more]
YPTC5_CHLRE1.395e-5969.68GTP-binding protein YPTC5 OS=Chlamydomonas reinhar... [more]
RAB7A_DICDI2.380e-5970.32Ras-related protein Rab-7A OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-007-F03-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744346 ID=EY744346; Name=EY744346; organism=Citrus sinensis; type=EST; length=1035bp
CCACGCGTCCGCGATATTTTTTTCAATTATCTAAAAATAAATAAATGTTA
ATAATAATAATAATAATTCAGAAAAACTACCTCGTGCAACAGCCAAAACT
ACATTGCACAGAGAAAATTCAATTGCGTTTTGAATAAAAAAATGGCTTCT
CGAAGACGCATGCTCCTCAAAGTTATAATCCTCGGAGACAGCGGGGTTGG
GAAGACTTCTTTGATGAATCAATATGTGAACCGCAAGTTTAGTAACCAGT
ATAAAGCAACCATTGGGGCAGATTTCTTGACCAAAGAAGTCCAATTTGAG
GACAGGCTTTTCACTTTGCAGATATGGGATACAGCTGGACAGGAAAGGTT
TCAAAGTCTTGGAGTGGCTTTCTACCGTGGCGCAGACTGTTGTGTTCTTG
TGTATGATGTGAATGTCATGAAATCATTTGATAATCTCAACAATTGGCGA
GAGGAGTTCCTGATTCAGGCCAGCCCTTCTGATCCTGAAAACTTNCCACG
NNTTGTATTGGGGAACAAGACCGATGTGGATGGTGGGAATAGTCAAGTGG
GGGCTGAGAAGAAGGCAAAGGGCTGGTGTGCCTTCCCAAGGGAATATCCC
TTATTTATGAAACACTGCCAAAAAAAGGTTCAATGAATAAACTGGATTTG
ATAGCATACCCAAAAACCTTCTGAAAACATGAACCTCGAGAAAAAAAAAT
ACAGACCCCACATCGCCTAGCTGACCGGGGGGGGGACCCACACACCAAGC
CTTGCAGCAAGCAGATATACAAAAACGAGGGCAGAGAAGGGAGGGAACGC
ATGTAAACGGAGAGGAAAGCCAAAACGAGAACGACAACAACGACAAGTCC
AGCCGCAGGACCGACTCACTCACGAAAATGACCATTCCACCGCCTTCCAG
CACGCACACACGCCCATCGCCCATTCCGCATACCTGATCCACGCCCTGAC
GCTAGAAGGNCGCTGTATTCACCCCATGCCAACATTGCGATCATTCATGA
GCAACATGACTATATCACTTCATACATATACGATG
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