EY744345

Overview
NameEY744345
Unique NameEY744345
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1042
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5975 contig Csv1_Contig5975:592..1633. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY744345 vs. ExPASy Swiss-Prot
Match: HMGCL_ARATH (Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Arabidopsis thaliana GN=HMGCL PE=1 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 6.348e-44
Identity = 100/160 (62.50%), Postives = 114/160 (71.25%), Query Frame = 1
Query:   13 PRSVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLRVYLXXXXXXXXXXXXXXXXXXSASEAFSKSNINCSIEESLVRYRAVARAAKDLSIP 492
            P+ VKIVEVGPRDGLQNEKN VPT VKVELI+RLVSSGLPVVEATSFVSPKWVPQLADA+DVM+AV  L+GARLPVLTPNLK          Q   S  +  + ++                   SASE+FS SNINC+IEESL+RYR VA AAK+ S+P
Sbjct:  165 PKFVKIVEVGPRDGLQNEKNIVPTSVKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMDAVNTLDGARLPVLTPNLKGF--------QAAVSAGAKEVAIF------------------ASASESFSLSNINCTIEESLLRYRVVATAAKEHSVP 298          
BLAST of EY744345 vs. ExPASy Swiss-Prot
Match: HMGCL_CHICK (Hydroxymethylglutaryl-CoA lyase OS=Gallus gallus GN=HMGCL PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 5.574e-32
Identity = 79/160 (49.38%), Postives = 97/160 (60.62%), Query Frame = 1
Query:   13 PRSVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLRVYLXXXXXXXXXXXXXXXXXXSASEAFSKSNINCSIEESLVRYRAVARAAKDLSIP 492
            P+ VK+VEVGPRDGLQNEK+ VPT VK+ LI  L  +GLPV+EATSFVSP+WVPQ+AD  +VM+ +  L G   PVLTPNLK             A+V +    V +                  +ASE F+K NINCSIEESL R+  V  AA+  SIP
Sbjct:    3 PQRVKVVEVGPRDGLQNEKSVVPTPVKIRLIDMLSETGLPVIEATSFVSPRWVPQMADHAEVMQGINKLPGVSYPVLTPNLKGF----------QAAVAAGAKEVSI----------------FGAASELFTKKNINCSIEESLERFSEVMNAARAASIP 136          
BLAST of EY744345 vs. ExPASy Swiss-Prot
Match: HMGCL_BOVIN (Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Bos taurus GN=HMGCL PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 1.051e-30
Identity = 76/159 (47.80%), Postives = 97/159 (61.01%), Query Frame = 1
Query:   13 PRSVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLRVYLXXXXXXXXXXXXXXXXXXSASEAFSKSNINCSIEESLVRYRAVARAAKDLSI 489
            P+ VKIVEVGPRDGLQNEKN VPT VK++LI  L  +GLPVVEATSFVSPKWVPQ+AD  +V++ ++   G   PVLTPN          F+   A+V +    V +                  +ASE F+K NINCSI+ESL R+  + +AA+   I
Sbjct:   30 PKQVKIVEVGPRDGLQNEKNIVPTPVKIKLIDMLSEAGLPVVEATSFVSPKWVPQMADHAEVLKGIQKFPGVNYPVLTPN----------FKGFQAAVAAGAKEVAIFG----------------AASELFTKKNINCSIDESLQRFDEILKAARAAGI 162          
BLAST of EY744345 vs. ExPASy Swiss-Prot
Match: HMGC2_MOUSE (Probable 3-hydroxymethyl-3-methylglutaryl-CoA lyase 2 OS=Mus musculus GN=Hmgcll1 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 3.059e-30
Identity = 76/160 (47.50%), Postives = 99/160 (61.88%), Query Frame = 1
Query:   13 PRSVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLRVYLXXXXXXXXXXXXXXXXXXSASEAFSKSNINCSIEESLVRYRAVARAAKDLSIP 492
            P  VKIVEVGPRDGLQNEK  VPT +K+ELI +L  +GL V+E TSFVS +WVPQ+AD  +VM  +R   G R PVLTPNL+        FQ   A+  ++ + V+                   +ASE+FSK NINCSIEES+ R++ V  +A+ + IP
Sbjct:   45 PEYVKIVEVGPRDGLQNEKVIVPTDIKIELINQLSQTGLSVIEVTSFVSSRWVPQMADHAEVMRGIRQYPGVRYPVLTPNLQG-------FQHAVAAG-ATEIAVF------------------GAASESFSKKNINCSIEESMGRFQEVISSARHMDIP 178          
BLAST of EY744345 vs. ExPASy Swiss-Prot
Match: HMGC2_HUMAN (Probable 3-hydroxymethyl-3-methylglutaryl-CoA lyase 2 OS=Homo sapiens GN=HMGCLL1 PE=2 SV=3)

HSP 1 Score: 132.88 bits (333), Expect = 3.059e-30
Identity = 73/160 (45.62%), Postives = 96/160 (60.00%), Query Frame = 1
Query:   13 PRSVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLRVYLXXXXXXXXXXXXXXXXXXSASEAFSKSNINCSIEESLVRYRAVARAAKDLSIP 492
            P  VKIVEVGPRDGLQNEK  VPT +K+E I RL  +GL V+E TSFVS +WVPQ+AD  +VM+ +    G R PVLTPNL          Q  H +V +    + +                  +ASE+FSK NINCSIEES+ ++  V ++A+ ++IP
Sbjct:   75 PEFVKIVEVGPRDGLQNEKVIVPTDIKIEFINRLSQTGLSVIEVTSFVSSRWVPQMADHTEVMKGIHQYPGVRYPVLTPNL----------QGFHHAVAAGATEISV----------------FGAASESFSKKNINCSIEESMGKFEEVVKSARHMNIP 208          
BLAST of EY744345 vs. ExPASy Swiss-Prot
Match: HMGCL_RAT (Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Rattus norvegicus GN=Hmgcl PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 5.217e-30
Identity = 74/159 (46.54%), Postives = 100/159 (62.89%), Query Frame = 1
Query:   13 PRSVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLRVYLXXXXXXXXXXXXXXXXXXSASEAFSKSNINCSIEESLVRYRAVARAAKDLSI 489
            P+ VKIVEVGPRDGLQNEK+ VPT VK++LI  L  +GLPV+EATSFVSPKWVPQ+AD  DV++ ++   G   PVLTPN+K        F++  A+  +  + ++                   +ASE F++ N+NCSIEES  R+  V +AA+  SI
Sbjct:   30 PKRVKIVEVGPRDGLQNEKSIVPTPVKIKLIDMLSEAGLPVIEATSFVSPKWVPQMADHSDVLKGIQKFPGINYPVLTPNMKG-------FEEAVAAG-AKEVSIF------------------GAASELFTRKNVNCSIEESFQRFDGVMQAARAASI 162          
BLAST of EY744345 vs. ExPASy Swiss-Prot
Match: HMGCL_MACFA (Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Macaca fascicularis GN=HMGCL PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 9.839e-29
Identity = 73/159 (45.91%), Postives = 95/159 (59.75%), Query Frame = 1
Query:   13 PRSVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLRVYLXXXXXXXXXXXXXXXXXXSASEAFSKSNINCSIEESLVRYRAVARAAKDLSI 489
            P+ VKIVEVGPRDGLQNEKN V T VK++LI  L  +GL V+EATSFVSPKWVPQ+AD  +V++ ++   G   PVL PNLK             A+V +    V +                  +ASE F+K N+NCSIEES  R+ A+ +AA+  +I
Sbjct:   30 PKQVKIVEVGPRDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIEATSFVSPKWVPQMADHAEVLKGIQKFPGITYPVLIPNLKGF----------EAAVAAGAKEVSI----------------FGAASELFTKKNVNCSIEESFQRFDAILKAAQSANI 162          
BLAST of EY744345 vs. ExPASy Swiss-Prot
Match: HMGCL_HUMAN (Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Homo sapiens GN=HMGCL PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 9.839e-29
Identity = 73/159 (45.91%), Postives = 94/159 (59.12%), Query Frame = 1
Query:   13 PRSVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLRVYLXXXXXXXXXXXXXXXXXXSASEAFSKSNINCSIEESLVRYRAVARAAKDLSI 489
            P+ VKIVEVGPRDGLQNEKN V T VK++LI  L  +GL V+E TSFVSPKWVPQ+ D  +V++ ++   G   PVLTPNLK             A+V +    V +                  +ASE F+K NINCSIEES  R+ A+ +AA+  +I
Sbjct:   30 PKRVKIVEVGPRDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIETTSFVSPKWVPQMGDHTEVLKGIQKFPGINYPVLTPNLKGF----------EAAVAAGAKEVVI----------------FGAASELFTKKNINCSIEESFQRFDAILKAAQSANI 162          
BLAST of EY744345 vs. ExPASy Swiss-Prot
Match: HMGCL_PONAB (Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Pongo abelii GN=HMGCL PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.285e-28
Identity = 73/159 (45.91%), Postives = 94/159 (59.12%), Query Frame = 1
Query:   13 PRSVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLRVYLXXXXXXXXXXXXXXXXXXSASEAFSKSNINCSIEESLVRYRAVARAAKDLSI 489
            P+ VKIVEVGPRDGLQNEKN V T VK++LI  L  +GL V+E TSFVSPKWVPQ+ D  +V++ ++   G   PVLTPNLK             A+V +    V +                  +ASE F+K NINCSIEES  R+ A+ +AA+  +I
Sbjct:   30 PKRVKIVEVGPRDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIETTSFVSPKWVPQMGDHTEVLKGIQKFPGINYPVLTPNLKGF----------EAAVAAGAKEVAI----------------FGAASELFTKKNINCSIEESFQRFDAILKAAQSANI 162          
BLAST of EY744345 vs. ExPASy Swiss-Prot
Match: HMGCL_MOUSE (Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Mus musculus GN=Hmgcl PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.285e-28
Identity = 73/159 (45.91%), Postives = 96/159 (60.38%), Query Frame = 1
Query:   13 PRSVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLRVYLXXXXXXXXXXXXXXXXXXSASEAFSKSNINCSIEESLVRYRAVARAAKDLSI 489
            P+ VKIVEVGPRDGLQNEK+ VPT VK+ LI  L  +GLPV+EATSFVSP WVPQ+AD  DV++ ++   G   PVLTPN+K        F++  A+  +  + V+                   + SE F++ N NCSIEES  R+  V +AA+  SI
Sbjct:   30 PKQVKIVEVGPRDGLQNEKSIVPTPVKIRLIDMLSEAGLPVIEATSFVSPNWVPQMADHSDVLKGIQKFPGINYPVLTPNMKG-------FEEAVAAG-AKEVSVF------------------GAVSELFTRKNANCSIEESFQRFAGVMQAAQAASI 162          
The following BLAST results are available for this feature:
BLAST of EY744345 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
HMGCL_ARATH6.348e-4462.50Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=... [more]
HMGCL_CHICK5.574e-3249.38Hydroxymethylglutaryl-CoA lyase OS=Gallus gallus G... [more]
HMGCL_BOVIN1.051e-3047.80Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=... [more]
HMGC2_MOUSE3.059e-3047.50Probable 3-hydroxymethyl-3-methylglutaryl-CoA lyas... [more]
HMGC2_HUMAN3.059e-3045.63Probable 3-hydroxymethyl-3-methylglutaryl-CoA lyas... [more]
HMGCL_RAT5.217e-3046.54Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=... [more]
HMGCL_MACFA9.839e-2945.91Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=... [more]
HMGCL_HUMAN9.839e-2945.91Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=... [more]
HMGCL_PONAB1.285e-2845.91Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=... [more]
HMGCL_MOUSE1.285e-2845.91Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-007-F02-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744345 ID=EY744345; Name=EY744345; organism=Citrus sinensis; type=EST; length=1042bp
CCACGCGTCCGACCAAGGTCTGTGAAGATAGTAGAAGTTGGTCCGAGAGA
TGGATTGCAAAATGAGAAGAATACTGTACCCACAGGTGTAAAGGTGGAAC
TGATTCGCAGATTAGTATCGTCTGGGTTACCTGTTGTTGAGGCTACAAGT
TTTGTCTCTCCAAAATGGGTTCCTCAGCTAGCAGATGCAAGGGATGTAAT
GGAGGCCGTCCGTGATTTGGAGGGAGCTAGATTGCCAGTTCTCACACCTA
ATTTAAAGGTCATTCTACAGAGATCCATATTATTTCAACAGTGTCATGCC
AGTGTGATCAGTTCTAACTTGCGGGTCTACCTGTAGGGGTTTGAAGCTGC
CATTGCAGCTGGTGCTAAGGAAGTTGCCATCTTTGCATCAGCTTCCGAGG
CTTTTTCCAAGTCAAACATCAATTGTAGCATTGAGGAGAGTCTTGTTCGT
TATCGCGCTGTCGCTCGTGCTGCTAAAGATCTGTCCATCCCCTGGTCGTG
GATATGTATCATGCGGTTGTTGGCTGCCCGGGGGAAACGAACCACTTCCT
CCACTCCAAAGTGCCTAATGTGGGAAAAGAAATTTCAAGAATAGGGATTG
GTTTGTAATTTTCTCTGGCGGGATGCAATTGAAATTGGGTAAACCAGCCA
ATCTGTTGTCCCCCTGCCTCGAATCCTAGCATAGCCTGGTTGTTACCTCG
GTGAGGAGCATGGACGGGCTCCTTTATCTCGATATCACAAGAAACACCCT
CTTCCCTAATAACTTTTCAAATCCACTCCATAACAGCGGAAAAAGCAACA
AAGGAAAAGCCGATTCCTCGGCCAGACCTGTACAGCAAGTGCACCGTTAT
GCCTCTAACGAGAATCACTACACGCACAACTCAGCGCAAAATCTCAAGTA
TCATGGTAGCACACCAACCCCCCCTATGCACACACCAAATATACCTCTCA
CCCCGAAACCAGATCCATGCCGGTGCTCTTTCTAACAGGCTCAAATGCTC
ACCGGCCTCGCACAGGGCACCCACGCGGGGTCACCTCGTACT
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