EY744339

Overview
NameEY744339
Unique NameEY744339
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length955
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744339 vs. ExPASy Swiss-Prot
Match: SPD2_ARATH (Spermidine synthase 2 OS=Arabidopsis thaliana GN=SPDSYN2 PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 1.255e-19
Identity = 59/128 (46.09%), Postives = 78/128 (60.94%), Query Frame = 1
Query:  325 MAETGSAAATDFPLKRPRDDGEKEANNNNNGSVLMEMDSN----KQPDCISSVIPGWVPGITPMWPGEAHSLKGEKILFQGESRLQNVWVFPSSDVRGRS*FSMGENSLTSQGARCAHNKILPRLFPC 696
            M+ T  A+ TD P+KRPR     EA  +NNG   ME ++     K+P C+SS+IPGW   I+PMWPGEAHSLK EKILFQG+S  Q+V VF S+   G+     G   LT +   CA+ +++  L  C
Sbjct:    1 MSSTQEASVTDLPVKRPR-----EAEEDNNGGA-METENGGGEIKEPSCMSSIIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQDVIVFQSA-TYGKVLVLDGVIQLTERD-ECAYQEMITHLPLC 120          
BLAST of EY744339 vs. ExPASy Swiss-Prot
Match: SPDE_SOLLC (Spermidine synthase OS=Solanum lycopersicum GN=SPDSYN PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.299e-16
Identity = 55/119 (46.22%), Postives = 72/119 (60.50%), Query Frame = 1
Query:  352 TDFPLKRPRDD-GEKE---ANNNNNGSVLMEMDSNKQPDCISSVIPGWVPGITPMWPGEAHSLKGEKILFQGESRLQNVWVFPSSDVRGRS*FSMGENSLTSQGARCAHNKILPRLFPC 696
            T+ P+KRPR++  E E   ANN+NNG      +  +    ISSV+PGW   I+P+WPGEAHSLK EKILFQG+S  QNV VF SS   G+     G   LT +   CA+ +++  L  C
Sbjct:   12 TELPVKRPREEEAETEMEAANNSNNGC-----EKEESSPYISSVLPGWFSEISPLWPGEAHSLKVEKILFQGKSDYQNVLVFQSS-TYGKVLVLDGVIQLTERD-ECAYQEMITHLPLC 123          
BLAST of EY744339 vs. ExPASy Swiss-Prot
Match: SPD1_ARATH (Spermidine synthase 1 OS=Arabidopsis thaliana GN=SPDSYN1 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.780e-16
Identity = 53/120 (44.17%), Postives = 73/120 (60.83%), Query Frame = 1
Query:  346 AATDFPLKRPRDDGEKEANNNNNGSVLMEM---DSNKQPDCISSVIPGWVPGITPMWPGEAHSLKGEKILFQGESRLQNVWVFPSSDVRGRS*FSMGENSLTSQGARCAHNKILPRLFPC 696
            +ATD  LKRPR++      ++N G+  ME    D  K+P C S+VIPGW   ++PMWPGEAHSLK EK+LFQG+S  Q+V VF S+   G+     G   LT +   CA+ +++  L  C
Sbjct:    7 SATD--LKRPREE------DDNGGAATMETENGDQKKEPACFSTVIPGWFSEMSPMWPGEAHSLKVEKVLFQGKSDYQDVIVFQSA-TYGKVLVLDGVIQLTERD-ECAYQEMITHLPLC 116          
BLAST of EY744339 vs. ExPASy Swiss-Prot
Match: SPD1_PEA (Spermidine synthase 1 OS=Pisum sativum GN=SPDSYN1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.450e-15
Identity = 52/116 (44.83%), Postives = 69/116 (59.48%), Query Frame = 1
Query:  349 ATDFPLKRPRDDGEKEANNNNNGSVLMEMDSNKQPDCISSVIPGWVPGITPMWPGEAHSLKGEKILFQGESRLQNVWVFPSSDVRGRS*FSMGENSLTSQGARCAHNKILPRLFPC 696
            +TD PLKR R+D   E N  ++      +    QP+ +SSVIPGW   I+PMWPGEAHSLK EKILFQG+S  Q+V VF S+   G+     G   LT +   CA+ +++  L  C
Sbjct:   10 STDSPLKRQRED---EVNGVSD-----TLSKEPQPNGLSSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQDVMVFQSA-TYGKVLILDGVIQLTERD-ECAYQEMITHLPLC 115          
BLAST of EY744339 vs. ExPASy Swiss-Prot
Match: SPD2_DATST (Spermidine synthase 2 OS=Datura stramonium PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.179e-15
Identity = 47/99 (47.47%), Postives = 62/99 (62.63%), Query Frame = 1
Query:  400 NNNNNGSVLMEMDSNKQPDCISSVIPGWVPGITPMWPGEAHSLKGEKILFQGESRLQNVWVFPSSDVRGRS*FSMGENSLTSQGARCAHNKILPRLFPC 696
            NNNNNG       ++K+  CISSV+PGW   I+P+WPGEAHSLK EKILFQG+S  Q+V VF S+   G+     G   LT +   CA+ +++  L  C
Sbjct:    7 NNNNNGCT-----NDKESPCISSVLPGWFSEISPLWPGEAHSLKVEKILFQGKSDYQDVMVFQST-TYGKVLVLDGVIQLTERD-ECAYQEMITHLPLC 98          
BLAST of EY744339 vs. ExPASy Swiss-Prot
Match: SPD2_PEA (Spermidine synthase 2 OS=Pisum sativum GN=SPDSYN2 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.709e-14
Identity = 53/122 (43.44%), Postives = 72/122 (59.02%), Query Frame = 1
Query:  340 SAAATDFPLKRPRDDGEKEANNNNNGSVLMEMDS-NKQP--DCISSVIPGWVPGITPMWPGEAHSLKGEKILFQGESRLQNVWVFPSSDVRGRS*FSMGENSLTSQGARCAHNKILPRLFPC 696
            S    +  +K  RDD EK +N  +  +V M+++  +K P  + +SSVIPGW   I+PMWPGEAHSLK EKILFQG+S  Q V VF SS   G+     G   LT +   CA+ +++  L  C
Sbjct:    5 STVELESSMKEHRDDDEK-SNGFSVSAVSMDVEGGDKDPSGNGVSSVIPGWFSEISPMWPGEAHSLKIEKILFQGKSEYQKVMVFQSS-TYGKVLVLDGVIQLTERD-ECAYQEMITHLPLC 123          
BLAST of EY744339 vs. ExPASy Swiss-Prot
Match: SPDE_NICSY (Spermidine synthase OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.620e-14
Identity = 49/100 (49.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:  397 ANNNNNGSVLMEMDSNKQPDCISSVIPGWVPGITPMWPGEAHSLKGEKILFQGESRLQNVWVFPSSDVRGRS*FSMGENSLTSQGARCAHNKILPRLFPC 696
            AN+NNNG       +N+ P  ISSV+PGW   I+P+WPGEAHSLK EKILFQG+S  QNV VF SS   G+     G   LT +   CA+ +++  L  C
Sbjct:    4 ANHNNNGC------TNESP-YISSVLPGWFSEISPLWPGEAHSLKVEKILFQGKSDYQNVMVFQSS-TYGKVLVLDGVIQLTERD-ECAYQEMIAHLPLC 94          
BLAST of EY744339 vs. ExPASy Swiss-Prot
Match: SPD1_DATST (Spermidine synthase 1 OS=Datura stramonium PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.881e-14
Identity = 44/90 (48.89%), Postives = 57/90 (63.33%), Query Frame = 1
Query:  427 MEMDSNKQPDCISSVIPGWVPGITPMWPGEAHSLKGEKILFQGESRLQNVWVFPSSDVRGRS*FSMGENSLTSQGARCAHNKILPRLFPC 696
            ME  +NK+   ISS++PGW   I+P+WPGEAHSLK EKILFQG+S  QNV VF SS   G+     G   LT +   CA+ +++  L  C
Sbjct:    1 MEEANNKESPYISSILPGWFSEISPLWPGEAHSLKVEKILFQGKSDYQNVMVFQSS-TYGKVLILDGVIQLTERD-ECAYQEMITHLPLC 88          
BLAST of EY744339 vs. ExPASy Swiss-Prot
Match: SPDE_COFAR (Spermidine synthase OS=Coffea arabica PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.344e-13
Identity = 44/82 (53.66%), Postives = 53/82 (64.63%), Query Frame = 1
Query:  451 PDCISSVIPGWVPGITPMWPGEAHSLKGEKILFQGESRLQNVWVFPSSDVRGRS*FSMGENSLTSQGARCAHNKILPRLFPC 696
            PD +SSVIPGW   I+PMWPGEAHSLK EKILFQG+S  QNV VF SS   G+     G   LT +   CA+ +++  L  C
Sbjct:   17 PDGVSSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSS-TYGKVLVLDGVIQLTERD-ECAYQEMIAHLPLC 96          
BLAST of EY744339 vs. ExPASy Swiss-Prot
Match: SPD1_HYONI (Spermidine synthase 1 OS=Hyoscyamus niger PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.293e-13
Identity = 46/101 (45.54%), Postives = 60/101 (59.41%), Query Frame = 1
Query:  394 EANNNNNGSVLMEMDSNKQPDCISSVIPGWVPGITPMWPGEAHSLKGEKILFQGESRLQNVWVFPSSDVRGRS*FSMGENSLTSQGARCAHNKILPRLFPC 696
            E  N +NG      ++ K+   ISSV+PGW   I+P+WPGEAHSLK EKILFQG+S  QNV VF SS   G+     G   LT +   CA+ +++  L  C
Sbjct:    2 EVTNQSNGC----SNNEKESPYISSVLPGWFSEISPLWPGEAHSLKVEKILFQGKSDYQNVMVFQSS-TYGKVLVLDGVIQLTERD-ECAYQEMITHLPLC 96          
The following BLAST results are available for this feature:
BLAST of EY744339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
SPD2_ARATH1.255e-1946.09Spermidine synthase 2 OS=Arabidopsis thaliana GN=S... [more]
SPDE_SOLLC1.299e-1646.22Spermidine synthase OS=Solanum lycopersicum GN=SPD... [more]
SPD1_ARATH3.780e-1644.17Spermidine synthase 1 OS=Arabidopsis thaliana GN=S... [more]
SPD1_PEA2.450e-1544.83Spermidine synthase 1 OS=Pisum sativum GN=SPDSYN1 ... [more]
SPD2_DATST4.179e-1547.47Spermidine synthase 2 OS=Datura stramonium PE=2 SV... [more]
SPD2_PEA2.709e-1443.44Spermidine synthase 2 OS=Pisum sativum GN=SPDSYN2 ... [more]
SPDE_NICSY4.620e-1449.00Spermidine synthase OS=Nicotiana sylvestris PE=2 S... [more]
SPD1_DATST7.881e-1448.89Spermidine synthase 1 OS=Datura stramonium PE=2 SV... [more]
SPDE_COFAR1.344e-1353.66Spermidine synthase OS=Coffea arabica PE=2 SV=1[more]
SPD1_HYONI2.293e-1345.54Spermidine synthase 1 OS=Hyoscyamus niger PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-007-E08-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744339 ID=EY744339; Name=EY744339; organism=Citrus sinensis; type=EST; length=955bp
GCATATATAAAGCGTTGCCCACCACCTTCGCACACTTTAAACCAAGCGCA
AGCGGCAGCAAACGCTAACACAAACACGAGCCGCATCTTTGCGAAGCCAG
ATTTGTAACTTTTTATAATATATTCTCCCACCACTCGCAGCTTGCAATTT
TTTATTTTAATTTTTCTTTATATATAAAAGGCAAAGAGGGACGGAGATTC
TGTTTGTGTGGCGCCTCTTGACTCCCGAGAGTTGCCTCGGCAGTCAGTTT
TCATTAGAAGTGAAGTGATTGTTGGGTTTTCGGGGGTTTGAAAGCAGAGA
GAATAATCAATAATAATATCTGTTATGGCGGAAACTGGGTCTGCTGCTGC
CACTGATTTTCCGTTGAAGAGGCCGAGAGATGACGGAGAGAAGGAGGCTA
ATAACAACAATAACGGGAGTGTGTTGATGGAGATGGACTCTAACAAACAG
CCTGATTGTATCTCCTCTGTTATTCCTGGCTGGGTCCCTGGAATCACCCC
AATGTGGCCCGGGGAGGCACATTCCTTGAAGGGTGAGAAAATCTTGTTTC
AAGGGGAGTCTAGATTACAAAATGTATGGGTCTTTCCATCTTCCGACGTA
CGCGGAAGGTCCTAATTCTCGATGGGGGAGAACTCGCTTACTAGCCAGGG
AGCAAGGTGCGCACACAATAAAATATTACCTCGCCTGTTCCCGTGTTGAA
AATCCCGAACGACGAAAAAGGCCGCGGAGTATGAATCAAGAACTTGACAG
ATCCCGTATGAAACTAAAAGCTTCCGACGTTCGAGCAGGGATACTGTCGG
CGCGATTCGCACAACCAAGTACCTAGAACCCAAACACCGAACACAACACA
TACAACAACTTAACCAGCCACAACAAAGCCAGCAAGCAACACACCTTACG
CACGCTGCGACACCCACAGAGAACAAGCAATTAGAGTAGACAGTCACAAA
ATAAG
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