EY744328

Overview
NameEY744328
Unique NameEY744328
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length554
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744328 vs. ExPASy Swiss-Prot
Match: CLPC_PEA (ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.200e-33
Identity = 73/78 (93.59%), Postives = 74/78 (94.87%), Query Frame = 1
Query:    1 KNTLLIMTSNVGSSVIEKGGRRIXPXLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRKLTKLEVKEIPD 234
            KNTLLIMTSNVGSSVIEKGGRRI   LDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFR+LTKLEVKEI D
Sbjct:  748 KNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIAD 825          
BLAST of EY744328 vs. ExPASy Swiss-Prot
Match: CLPAB_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.863e-32
Identity = 72/78 (92.31%), Postives = 73/78 (93.59%), Query Frame = 1
Query:    1 KNTLLIMTSNVGSSVIEKGGRRIXPXLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRKLTKLEVKEIPD 234
            KNTLLIMTSNVGSSVIEKGGRRI   LD DEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFR+LTKLEVKEI D
Sbjct:  748 KNTLLIMTSNVGSSVIEKGGRRIGFDLDLDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIAD 825          
BLAST of EY744328 vs. ExPASy Swiss-Prot
Match: CLPAA_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.177e-32
Identity = 71/78 (91.03%), Postives = 73/78 (93.59%), Query Frame = 1
Query:    1 KNTLLIMTSNVGSSVIEKGGRRIXPXLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRKLTKLEVKEIPD 234
            KNTLLIMTSNVGSSVIEKGGRRI   LD+DEKDSSYNRIKSLVTEELKQYFRPEFLNRL EMIVFR+LTKLEVKEI D
Sbjct:  751 KNTLLIMTSNVGSSVIEKGGRRIGFDLDFDEKDSSYNRIKSLVTEELKQYFRPEFLNRLSEMIVFRQLTKLEVKEIAD 828          
BLAST of EY744328 vs. ExPASy Swiss-Prot
Match: CLPA_BRANA (ATP-dependent Clp protease ATP-binding subunit clpA homolog, chloroplastic (Fragment) OS=Brassica napus GN=CLPA PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.335e-30
Identity = 70/78 (89.74%), Postives = 73/78 (93.59%), Query Frame = 1
Query:    1 KNTLLIMTSNVGSSVIEKGGRRIXPXLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRKLTKLEVKEIPD 234
            KNTLLIMTSNVGSSVIEKGGRRI   LDY EKDSSYNRIKSLVT+ELKQYFRPEFLNRLDEMI+FR+LTKLEVKEI D
Sbjct:  696 KNTLLIMTSNVGSSVIEKGGRRIGFDLDY-EKDSSYNRIKSLVTQELKQYFRPEFLNRLDEMILFRQLTKLEVKEIAD 772          
BLAST of EY744328 vs. ExPASy Swiss-Prot
Match: CLPC_PORYE (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra yezoensis GN=clpC PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.064e-23
Identity = 54/78 (69.23%), Postives = 64/78 (82.05%), Query Frame = 1
Query:    1 KNTLLIMTSNVGSSVIEKGGRRIXPXLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRKLTKLEVKEIPD 234
            KNTLLIMTSN+GS VIEKGG  +   L  D+ +S Y R++SLV EELKQYFRPEFLNRLDE+IVFR+LTK EV+EI +
Sbjct:  654 KNTLLIMTSNIGSKVIEKGGGSLGFELSEDQTESQYTRVRSLVNEELKQYFRPEFLNRLDEIIVFRQLTKDEVREIAE 731          
BLAST of EY744328 vs. ExPASy Swiss-Prot
Match: CLPC_PORPU (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra purpurea GN=clpC PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.064e-23
Identity = 54/78 (69.23%), Postives = 64/78 (82.05%), Query Frame = 1
Query:    1 KNTLLIMTSNVGSSVIEKGGRRIXPXLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRKLTKLEVKEIPD 234
            KNTLLIMTSN+GS VIEKGG  +   L  D+ +S Y R++SLV EELKQYFRPEFLNRLDE+IVFR+LTK EV+EI +
Sbjct:  654 KNTLLIMTSNIGSKVIEKGGGSLGFELSEDQTESQYTRVRSLVNEELKQYFRPEFLNRLDEIIVFRQLTKDEVREIAE 731          
BLAST of EY744328 vs. ExPASy Swiss-Prot
Match: CLPC_GUITH (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Guillardia theta GN=clpC PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.025e-22
Identity = 55/78 (70.51%), Postives = 63/78 (80.77%), Query Frame = 1
Query:    1 KNTLLIMTSNVGSSVIEKGGRRIXPXLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRKLTKLEVKEIPD 234
            KNTLLI+TSNVGS VIEKGG  +   L  D+ +S Y RIK+LV EELKQYFRPEFLNRLDE+IVFR+LTK EV EI +
Sbjct:  651 KNTLLILTSNVGSKVIEKGGGGLGFDLSEDQTESQYGRIKALVNEELKQYFRPEFLNRLDEIIVFRQLTKDEVGEIAE 728          
BLAST of EY744328 vs. ExPASy Swiss-Prot
Match: CLPC_CYACA (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Cyanidium caldarium GN=clpC PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.060e-19
Identity = 48/76 (63.16%), Postives = 63/76 (82.89%), Query Frame = 1
Query:    1 KNTLLIMTSNVGSSVIEKGGRRIXPXLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRKLTKLEVKEI 228
            KNTLLIMTSN+GS VIEK G  +   L+ + ++  Y+R+++LV EELKQYFRPEFLNR+DE+IVFR+LTK EV++I
Sbjct:  684 KNTLLIMTSNIGSKVIEKKGGGLGFELEENIEELQYSRMRNLVNEELKQYFRPEFLNRVDEIIVFRQLTKDEVRDI 759          
BLAST of EY744328 vs. ExPASy Swiss-Prot
Match: ERD1_ARATH (ERD1 protein, chloroplastic OS=Arabidopsis thaliana GN=ERD1 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.445e-16
Identity = 44/77 (57.14%), Postives = 56/77 (72.73%), Query Frame = 1
Query:    1 KNTLLIMTSNVGSSVIEKGGR-RIXPXLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRKLTKLEVKEI 228
            KN L+IMTSNVGS  I KG    I   LD DE+ +SY  +K+LV EELK YFRPE LNR+DE+++FR+L K ++ EI
Sbjct:  769 KNALIIMTSNVGSLAIAKGRHGSIGFILDDDEEAASYTGMKALVVEELKNYFRPELLNRIDEIVIFRQLEKAQMMEI 845          
BLAST of EY744328 vs. ExPASy Swiss-Prot
Match: CLPB_OCEIH (Chaperone protein clpB OS=Oceanobacillus iheyensis GN=clpB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.255e-12
Identity = 40/76 (52.63%), Postives = 55/76 (72.37%), Query Frame = 1
Query:    1 KNTLLIMTSNVGSSVIEKGGRRIXPXLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRKLTKLEVKEI 228
            +NT++IMTSNVG+S +++  + +   LD +EKD  Y  +KS V EELK+ FRPEFLNR+DE IVF  L K  +K+I
Sbjct:  653 RNTVIIMTSNVGASELKRN-KYVGFALDNEEKD--YKDMKSKVIEELKKAFRPEFLNRIDETIVFHSLEKEHMKDI 725          
The following BLAST results are available for this feature:
BLAST of EY744328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
CLPC_PEA2.200e-3393.59ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPAB_SOLLC1.863e-3292.31ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPAA_SOLLC3.177e-3291.03ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPA_BRANA1.335e-3089.74ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PORYE2.064e-2369.23ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PORPU2.064e-2369.23ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_GUITH1.025e-2270.51ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_CYACA1.060e-1963.16ATP-dependent Clp protease ATP-binding subunit clp... [more]
ERD1_ARATH5.445e-1657.14ERD1 protein, chloroplastic OS=Arabidopsis thalian... [more]
CLPB_OCEIH1.255e-1252.63Chaperone protein clpB OS=Oceanobacillus iheyensis... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-007-D09-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744328 ID=EY744328; Name=EY744328; organism=Citrus sinensis; type=EST; length=554bp
AAGAATACTCTTCTAATAATGACATCAAATGTTGGAAGCAGTGTAATTGA
GAAGGGAGGACGCCGCATTGNCCCCNATCTTGATTATGATGAGAAAGACA
GCAGTTACAACAGGATTAAGAGTCTGGTAACTGAGGAATTGAAGCAGTAC
TTCAGGCCAGAGTTCTTGAATAGATTGGATGAGATGATTGTTTTCCGAAA
ACTCACCAAGCTGGAGGTTAAAGAAATCCCTGATAATAATGCTGAAGGAA
GGGGTTTGATAGACTCAGAAAAAAAAAATTGAACTTTCAAGTGAAAAAAA
AATTTTAAGGGAAAGGGGGGGTGTAAGAAGGTTTTACCCCACGCTATGGA
AGCCAGGGCAATGGAAAAGAAACTATTTTGAAAATTTTTTGGAAAAACCG
CTTGGGTTTGAAAAGAAGTGTTTGCAAGAAAAAGCATCTAGCAAGGGGGG
TGTCAAGCCTCCCCTAAATCTCGAATTTTTTTATGGGGACAAACAGGCAT
CCCCCCCACCCAGGTCATCAAATCAAGGTGCCCTCCCACAAACCACTTCA
TGCG
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