EY744300

Overview
NameEY744300
Unique NameEY744300
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1043
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY744300 vs. ExPASy Swiss-Prot
Match: SRRT_ARATH (Serrate RNA effector molecule OS=Arabidopsis thaliana GN=SE PE=1 SV=2)

HSP 1 Score: 259.61 bits (662), Expect = 2.167e-68
Identity = 132/184 (71.74%), Postives = 153/184 (83.15%), Query Frame = 1 
Query:   13 NDLARPVAKDFLLDLQSGTLDLGPSVNASSSNKLGQTSEPNSDDDVDNGGKRRRHGRGPAKETDLLSAAPKAHPISSEPRRIQVDIEQAQALVRKLDSEKGITENILCGSDNDKMNREKSH-GSTGPVIIIRGLTSVKGLEGVELLDTLITYLWRIHGVDYYGTVDTSEPKGLRHAKAEGKSSD 561
            NDLA+ VAKDFLLDLQSGTLDLGP+V A   NK G+TSEPNS+D+    GKR+RHG G AKE +LLSAAPKA   +S+P+RI  D+EQ QALVRKLDSEK I EN+L GS+ +K  REK H GSTGPV+IIRGLTSVKGLEGVELLDTL+TYLWR+HG+DYYG V+T+E KGLRH +AEGK SD
Sbjct:  260 NDLAQKVAKDFLLDLQSGTLDLGPAVTAL--NKSGRTSEPNSEDEAAGVGKRKRHGMGGAKENELLSAAPKAPSFTSDPKRILTDVEQTQALVRKLDSEKKIEENVLQGSETEKSGREKLHSGSTGPVVIIRGLTSVKGLEGVELLDTLVTYLWRVHGLDYYGKVETNEAKGLRHVRAEGKVSD 441
The following BLAST results are available for this feature:
BLAST of EY744300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SRRT_ARATH2.167e-6871.74Serrate RNA effector molecule OS=Arabidopsis thali... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C5-003-007-B04-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744300 ID=EY744300; Name=EY744300; organism=Citrus sinensis; type=EST; length=1043bp
CCCGCGTCCGGGAATGATCTTGCACGACCGGTGGCAAAGGATTTTTTGCT
TGATTTACAGAGTGGAACCTTGGACTTAGGTCCCAGTGTCAATGCATCAT
CGTCAAATAAATTAGGACAGACGAGCGAACCAAATTCTGATGATGATGTA
GACAATGGTGGTAAAAGAAGACGGCACGGTCGGGGACCAGCTAAAGAAAC
TGATCTTCTTTCTGCTGCACCTAAGGCTCACCCAATTAGTTCAGAGCCAA
GAAGAATTCAAGTTGACATTGAACAAGCGCAGGCCCTTGTTCGTAAACTT
GACTCTGAGAAAGGAATTACGGAAAATATTTTATGTGGATCTGATAATGA
TAAAATGAACCGGGAGAAATCCCATGGCTCCACTGGTCCAGTTATTATCA
TTCGAGGCTTGACCTCTGTTAAGGGCCTCGAGGGAGTTGAGCTGCTGGAT
ACACTTATTACTTATCTGTGGCGCATACATGGCGTGGATTATTATGGGAC
GGTTGACACAAGTGAACCCAAGGGGCTCAGACATGCGAAAGCTGAGGGAA
AGAGTTCCGACATTAATTAATACTGGACCCGAACGCGCAAACACACCTTG
CCTCTCCCTAGGCCAAACAAATCCCAAGGTCCCAAGCCCCTGGCAAACTC
ATGGACTGGTGCGCGCCAGTTTCCTGGCGGCCCGTCGCGGCTGCCCCTCC
ACCCCTTTTGCGCCGAACACTCGGCGCCGCCGCTTGACCCGCGGCGAAGG
CGCCGCCCACCGGACCGTACGCCCCCCCACCTCTCCGTCCCCGCCGCCGA
ACCCCGGGCGAGCATCCATACTACCACTCCCCGCATCCCCCTAATGTGTC
GGACCCACCCCCCCGCCCCCCCCCCGCGCCCGGCCGGCGACCCCGCGCAC
CCTACCGGCATCTTGCCTCAACCTGACTAATCCGCTCTACTCCTCCGCAT
ACGCATGACGGGCACAATGCCGGCAAGCGCAATGCACGGGCGGCCAAGCG
GTCGGCCCAGCCGCCCGCGGGGTGCGCGAGGCGCCGCGAACAT
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