EY744261

Overview
NameEY744261
Unique NameEY744261
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1022
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY744261_ssr77 microsatellite EY744261_ssr77:77..91. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY744261 vs. ExPASy Swiss-Prot
Match: ODPB_STAPU (Pyruvate dehydrogenase E1 component subunit beta OS=Staurastrum punctulatum GN=pdhB PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 3.502e-31
Identity = 69/90 (76.67%), Postives = 75/90 (83.33%), Query Frame = 2
Query:  353 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLTEKYGDLRVLDTPIAENSFTGMGIGAALTGLEAQLWKE*KWGFLSLTF 622
            E+LLFEALREGL+EEMDRDP V VMGEDVGHYGGSYKVTKG  EKYGDLR+LDTPIAENSFTGM IGAA+TGL   + +    GFL L F
Sbjct:    3 EMLLFEALREGLQEEMDRDPKVLVMGEDVGHYGGSYKVTKGFAEKYGDLRLLDTPIAENSFTGMAIGAAMTGLRPVV-EGMNMGFLLLAF 91          
BLAST of EY744261 vs. ExPASy Swiss-Prot
Match: ODPB_ZYGCR (Pyruvate dehydrogenase E1 component subunit beta OS=Zygnema circumcarinatum GN=pdhB PE=3 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 1.738e-30
Identity = 67/90 (74.44%), Postives = 75/90 (83.33%), Query Frame = 2
Query:  353 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLTEKYGDLRVLDTPIAENSFTGMGIGAALTGLEAQLWKE*KWGFLSLTF 622
            E+LLFEALR+GL+EEMDRDP V VMGEDVGHYGGSYKVTKG  E+YGDLR+LDTPIAENSFTGM IGAA+TGL   + +    GFL L F
Sbjct:    3 EVLLFEALRQGLQEEMDRDPRVMVMGEDVGHYGGSYKVTKGFAERYGDLRLLDTPIAENSFTGMAIGAAMTGLRPVV-EGMNMGFLLLAF 91          
BLAST of EY744261 vs. ExPASy Swiss-Prot
Match: ODPB_CHAGL (Pyruvate dehydrogenase E1 component subunit beta OS=Chaetosphaeridium globosum GN=pdhB PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 4.282e-29
Identity = 66/90 (73.33%), Postives = 73/90 (81.11%), Query Frame = 2
Query:  353 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLTEKYGDLRVLDTPIAENSFTGMGIGAALTGLEAQLWKE*KWGFLSLTF 622
            E+LLFEALR+ L+EEM RDP V VMGEDVGHYGGSYKVTKG  EKYGDLR+LDTPIAENSFTGM IGAA+TGL   + +    GFL L F
Sbjct:    3 EVLLFEALRDALDEEMQRDPSVLVMGEDVGHYGGSYKVTKGFHEKYGDLRLLDTPIAENSFTGMAIGAAMTGLR-PIVEGMNMGFLLLAF 91          
BLAST of EY744261 vs. ExPASy Swiss-Prot
Match: ODPB_CYAME (Pyruvate dehydrogenase E1 component subunit beta OS=Cyanidioschyzon merolae GN=pdhB PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 5.815e-28
Identity = 57/75 (76.00%), Postives = 65/75 (86.67%), Query Frame = 2
Query:  350 HELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLTEKYGDLRVLDTPIAENSFTGMGIGAALTGLE 574
            H+L ++EALRE ++EEM RD  V V+GEDVGHYGGSYKVTK L  KYGDLRVLDTPIAENSFTGM IGAA+TGL+
Sbjct:    3 HKLFMYEALREAIDEEMARDKRVFVLGEDVGHYGGSYKVTKQLHTKYGDLRVLDTPIAENSFTGMAIGAAMTGLK 77          

HSP 2 Score: 26.1794 bits (56), Expect = 5.815e-28
Identity = 15/33 (45.45%), Postives = 19/33 (57.58%), Query Frame = 1
Query:  577 PIVEGMKMGISFFNLSTIFSNNLRVWPHYTSGG 675
            P+VEGM +       + I SNN  +  HYTSGG
Sbjct:   78 PVVEGMNLSFLLLAFNQI-SNNAGML-HYTSGG 108          
BLAST of EY744261 vs. ExPASy Swiss-Prot
Match: ODPB_CHAVU (Pyruvate dehydrogenase E1 component subunit beta OS=Chara vulgaris GN=pdhB PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 4.007e-27
Identity = 61/90 (67.78%), Postives = 73/90 (81.11%), Query Frame = 2
Query:  353 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLTEKYGDLRVLDTPIAENSFTGMGIGAALTGLEAQLWKE*KWGFLSLTF 622
            E LL+EAL EG+ EE++RDP V V+GED+GHYGGSYKVTKGL EKYG+LR+LDTPIAENSFTG+ IGAA+TGL   + +    GFL L F
Sbjct:    3 EKLLYEALNEGIHEEIERDPKVFVIGEDIGHYGGSYKVTKGLFEKYGNLRILDTPIAENSFTGIAIGAAMTGLR-PIIEGMNMGFLLLAF 91          
BLAST of EY744261 vs. ExPASy Swiss-Prot
Match: ODPB_PORYE (Pyruvate dehydrogenase E1 component subunit beta OS=Porphyra yezoensis GN=pdhB PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.242e-27
Identity = 55/73 (75.34%), Postives = 63/73 (86.30%), Query Frame = 2
Query:  353 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLTEKYGDLRVLDTPIAENSFTGMGIGAALTGL 571
            ++ +F+ALR   +EEM +DP VCV+GEDVGHYGGSYKVTK L  KYGDLRVLDTPIAENSFTGM IGAA+TGL
Sbjct:    3 KIFMFDALRAATDEEMAKDPTVCVIGEDVGHYGGSYKVTKDLHSKYGDLRVLDTPIAENSFTGMAIGAAITGL 75          

HSP 2 Score: 24.6386 bits (52), Expect = 6.242e-27
Identity = 16/33 (48.48%), Postives = 18/33 (54.55%), Query Frame = 1
Query:  577 PIVEGMKMGISFFNLSTIFSNNLRVWPHYTSGG 675
            PIVEGM M       + I SNN  +   YTSGG
Sbjct:   77 PIVEGMNMSFLLLAFNQI-SNNAGML-RYTSGG 107          
BLAST of EY744261 vs. ExPASy Swiss-Prot
Match: ODPB_PORPU (Pyruvate dehydrogenase E1 component subunit beta OS=Porphyra purpurea GN=pdhB PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.952e-26
Identity = 54/73 (73.97%), Postives = 63/73 (86.30%), Query Frame = 2
Query:  353 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLTEKYGDLRVLDTPIAENSFTGMGIGAALTGL 571
            ++ +F+ALR   +EEM++D  VCV+GEDVGHYGGSYKVTK L  KYGDLRVLDTPIAENSFTGM IGAA+TGL
Sbjct:    3 KVFMFDALRAATDEEMEKDLTVCVIGEDVGHYGGSYKVTKDLHSKYGDLRVLDTPIAENSFTGMAIGAAITGL 75          

HSP 2 Score: 24.6386 bits (52), Expect = 3.952e-26
Identity = 16/33 (48.48%), Postives = 18/33 (54.55%), Query Frame = 1
Query:  577 PIVEGMKMGISFFNLSTIFSNNLRVWPHYTSGG 675
            PIVEGM M       + I SNN  +   YTSGG
Sbjct:   77 PIVEGMNMSFLLLAFNQI-SNNAGML-RYTSGG 107          
BLAST of EY744261 vs. ExPASy Swiss-Prot
Match: ODPB_GRATL (Pyruvate dehydrogenase E1 component subunit beta OS=Gracilaria tenuistipitata var. liui GN=pdhB PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.135e-25
Identity = 54/73 (73.97%), Postives = 61/73 (83.56%), Query Frame = 2
Query:  353 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLTEKYGDLRVLDTPIAENSFTGMGIGAALTGL 571
            E+L+F+ALRE  +EEM  D  V ++GEDVGHYGGSYKVTK L  KYGDLRVLDTPIAENSF GM IGAA+TGL
Sbjct:    3 EVLMFDALREATDEEMQNDSSVFILGEDVGHYGGSYKVTKDLHSKYGDLRVLDTPIAENSFMGMAIGAAITGL 75          

HSP 2 Score: 24.6386 bits (52), Expect = 1.135e-25
Identity = 16/33 (48.48%), Postives = 18/33 (54.55%), Query Frame = 1
Query:  577 PIVEGMKMGISFFNLSTIFSNNLRVWPHYTSGG 675
            PIVEGM M       + I SNN  +   YTSGG
Sbjct:   77 PIVEGMNMSFLLLAFNQI-SNNAGML-RYTSGG 107          
BLAST of EY744261 vs. ExPASy Swiss-Prot
Match: ODPB_CYACA (Pyruvate dehydrogenase E1 component subunit beta OS=Cyanidium caldarium GN=pdhB PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 5.416e-24
Identity = 57/93 (61.29%), Postives = 69/93 (74.19%), Query Frame = 2
Query:  356 LLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLTEKYGDLRVLDTPIAENSFTGMGIGAALTGLEAQLWKE*KWGFLSLTFQPYS 634
            + L+EALR  ++EEM +D +V ++GEDVGHYGGSYKVTK L  KYGDLRVLD PIAENSFTGM IGAA+TGL   + +    GF+ L F   S
Sbjct:    4 MFLYEALRAAIDEEMGKDSNVFIVGEDVGHYGGSYKVTKDLHVKYGDLRVLDAPIAENSFTGMAIGAAMTGLR-PIVEGMNMGFMLLAFNQIS 95          
BLAST of EY744261 vs. ExPASy Swiss-Prot
Match: ODPB_MESVI (Pyruvate dehydrogenase E1 component subunit beta OS=Mesostigma viride GN=pdhB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.782e-20
Identity = 51/91 (56.04%), Postives = 64/91 (70.33%), Query Frame = 2
Query:  362 LFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLTEKYGDLRVLDTPIAENSFTGMGIGAALTGLEAQLWKE*KWGFLSLTFQPYS 634
            LFEAL   ++EEM R+  V ++GED+GHYGGSYKVT+ L  KYG+ RV+DTPIAENSF G  IGAA+TGL   + +    GF+ L F   S
Sbjct:    6 LFEALNMAIDEEMARNDKVALLGEDIGHYGGSYKVTQNLYAKYGEHRVIDTPIAENSFVGAAIGAAMTGL-VTVVEGMNMGFILLAFSQIS 95          
The following BLAST results are available for this feature:
BLAST of EY744261 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
ODPB_STAPU3.502e-3176.67Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ZYGCR1.738e-3074.44Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CHAGL4.282e-2973.33Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CYAME5.815e-2876.00Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CHAVU4.007e-2767.78Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_PORYE6.242e-2775.34Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_PORPU3.952e-2673.97Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_GRATL1.135e-2573.97Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CYACA5.416e-2461.29Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_MESVI2.782e-2056.04Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-001-F08-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744261 ID=EY744261; Name=EY744261; organism=Citrus sinensis; type=EST; length=1022bp
ATTTTAAACAAACATTCAATTTCTTTTCGCCATTTCCTTCTTTCAGTTAA
TAAGAAAAACCTCTCGCAGTTCTTCAAATCGAATCGAATCGAATCCAATG
GCTGCAATTTTCCTGGGCGTGGGAGCTGCAACGGCTTTATCACCGTCCAA
TTGCTTCGATTCTAAGAAGTTCCAGCTCTCAACTCGCAGATCTCTCTCAG
GACGGAAACCGTGGTTCTTAGTTGTCAGATCTGATGGAAGCGTCAACTTA
GGCTCGAATCAAAGATCCCGGAGGACTCAACAGTTGATCACTAATGCAGT
TGCAACGAAGGCTGATTCGGCAGCTTCTACTTCGGCATCAAAGCAAGGGC
ACGAACTTTTACTTTTTGAAGCTCTACGAGAAGGCTTGGAAGAAGAAATG
GACAGAGATCCACATGTATGTGTCATGGGTGAAGATGTTGGTCACTATGG
GGGTTCGTACAAAGTGACCAAAGGCCTGACTGAAAAGTATGGGGATCTCA
GGGTTCTTGACACCCCTATTGCTGAGAACTCTTTCACTGGTATGGGCATT
GGGGCTGCCCTGACTGGGCTTGAGGCCCAATTGTGGAAGGAATGAAAATG
GGGATTTCTTTCTTTAACCTTTCAACCATATTCTCCAACAACTTGAGGGT
ATGGCCCCACTATACTTCTGGTGGGGCAGGTTAACCCTCACAATAATTTA
TCCCTGGGACCTGGGTGGAATTTGGCCAAAAAACTGTGAACTGAAACCTT
CCCCAAGGCCCCTGAAGCCATAATTTTCCAATCAAACCCCCGGAAAAATA
AAATGGGGGGGCCAGGGTCCAAACCCCCATACAAATGGCCAAAGGGGTAT
TGGATAAAAAGACTTATCACCCCCCAAAAGGTAAGAAAACCCATTTTTTA
TCCCTTTTTTACAAAGAAGATGGGTTTTTGTCTTTAATTACACCCCCCAA
AAAGGAAAGAAGAGATATCCCCAAAACAAGAAGAAAAAAAAAATAATTTT
TTTTTTTAAAAAATTCTTGTGT
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