EY744241

Overview
NameEY744241
Unique NameEY744241
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12873 contig Csv1_Contig12873:1..624. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAA2C_ARATH (Ras-related protein RABA2c OS=Arabidopsis thaliana GN=RABA2C PE=2 SV=4)

HSP 1 Score: 205.682 bits (522), Expect = 1.596e-52
Identity = 102/107 (95.33%), Postives = 105/107 (98.13%), Query Frame = 1
Query:  304 QVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATH 624
            QVEGKT+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLR+V EEDG SLAEKEGLSFLETSALEAT+
Sbjct:   55 QVEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQSLAEKEGLSFLETSALEATN 161          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.305e-51
Identity = 100/108 (92.59%), Postives = 106/108 (98.15%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATH 624
            +QVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV RWLRELRDHADSNIVIMMAGNKSDLNHLRAV+E+DG +L+EKEGLSFLETSALEAT+
Sbjct:   54 LQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSEDDGGALSEKEGLSFLETSALEATN 161          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 5.136e-51
Identity = 100/108 (92.59%), Postives = 104/108 (96.30%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATH 624
            +QVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV RWLRELRDHADSNIVIMMAGNKSDL HLRAV+EEDG +LAEKEGLSFLETSALEA +
Sbjct:   54 LQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLKHLRAVSEEDGQALAEKEGLSFLETSALEAVN 161          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RB11A_TOBAC (Ras-related protein Rab11A OS=Nicotiana tabacum GN=RAB11A PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 7.674e-47
Identity = 92/106 (86.79%), Postives = 99/106 (93.40%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEA 618
            +QVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL YDITKRQTFDNV RWLRELRDH DSNIVI++AGNKSDL HLRAV+E+D  +L +KEGLSFLETSALEA
Sbjct:   54 LQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLFYDITKRQTFDNVQRWLRELRDHRDSNIVIILAGNKSDLKHLRAVSEQDDQALVKKEGLSFLETSALEA 159          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RGP2_ORYSJ (Ras-related protein RGP2 OS=Oryza sativa subsp. japonica GN=RGP2 PE=2 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 1.002e-46
Identity = 91/108 (84.26%), Postives = 102/108 (94.44%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATH 624
            +Q+EGKT+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQ+FDNV RWLRELRDHADS+IVIMM GNKSDL HLRAV+E++G +LAEKEGL FLETSA+EA +
Sbjct:   54 LQMEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQSFDNVHRWLRELRDHADSSIVIMMVGNKSDLIHLRAVSEDEGKALAEKEGLFFLETSAMEAVN 161          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAA2A_ARATH (Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.600e-44
Identity = 87/106 (82.08%), Postives = 96/106 (90.57%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEA 618
            +QVEG+TVKAQIWDTAGQERYRAITSAYYRGA+GALLVYD+TK  TF+NV RWL+ELRDHADSNIVIM+ GNK+DL HLRAV  ED  S AEKEGLSF+ETSALEA
Sbjct:   54 LQVEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIETSALEA 159          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.498e-42
Identity = 84/108 (77.78%), Postives = 95/108 (87.96%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATH 624
            +QV+GKT+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITK  TF+NV RWL+ELRDHADSNIVIM+ GNKSDL HLR V  E   +  E+EGLSF+ETSALE+T+
Sbjct:   54 IQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKSVTFENVERWLKELRDHADSNIVIMLVGNKSDLKHLRDVQTEVAQAFCEREGLSFIETSALESTN 161          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RB11A_RAT (Ras-related protein Rab-11A OS=Rattus norvegicus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 172.555 bits (436), Expect = 1.498e-42
Identity = 82/108 (75.93%), Postives = 96/108 (88.89%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATH 624
            +QV+GKT+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDI K  T++NV RWL+ELRDHADSNIVIM+ GNKSDL HLRAV  ++  + AEK GLSF+ETSAL++T+
Sbjct:   53 IQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTN 160          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RB11A_RABIT (Ras-related protein Rab-11A OS=Oryctolagus cuniculus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 172.555 bits (436), Expect = 1.498e-42
Identity = 82/108 (75.93%), Postives = 96/108 (88.89%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATH 624
            +QV+GKT+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDI K  T++NV RWL+ELRDHADSNIVIM+ GNKSDL HLRAV  ++  + AEK GLSF+ETSAL++T+
Sbjct:   53 IQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTN 160          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RB11A_PONAB (Ras-related protein Rab-11A OS=Pongo abelii GN=RAB11A PE=2 SV=3)

HSP 1 Score: 172.555 bits (436), Expect = 1.498e-42
Identity = 82/108 (75.93%), Postives = 96/108 (88.89%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATH 624
            +QV+GKT+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDI K  T++NV RWL+ELRDHADSNIVIM+ GNKSDL HLRAV  ++  + AEK GLSF+ETSAL++T+
Sbjct:   53 IQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTN 160          
The following BLAST results are available for this feature:
BLAST of EY744241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 401
Match NameE-valueIdentityDescription
RAA2C_ARATH1.596e-5295.33Ras-related protein RABA2c OS=Arabidopsis thaliana... [more]
RB11C_LOTJA2.305e-5192.59Ras-related protein Rab11C OS=Lotus japonicus GN=R... [more]
RB2BV_BETVU5.136e-5192.59Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]
RB11A_TOBAC7.674e-4786.79Ras-related protein Rab11A OS=Nicotiana tabacum GN... [more]
RGP2_ORYSJ1.002e-4684.26Ras-related protein RGP2 OS=Oryza sativa subsp. ja... [more]
RAA2A_ARATH1.600e-4482.08Ras-related protein RABA2a OS=Arabidopsis thaliana... [more]
YPTC6_CHLRE1.498e-4277.78Ras-related protein YPTC6 OS=Chlamydomonas reinhar... [more]
RB11A_RAT1.498e-4275.93Ras-related protein Rab-11A OS=Rattus norvegicus G... [more]
RB11A_RABIT1.498e-4275.93Ras-related protein Rab-11A OS=Oryctolagus cunicul... [more]
RB11A_PONAB1.498e-4275.93Ras-related protein Rab-11A OS=Pongo abelii GN=RAB... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-001-D12-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744241 ID=EY744241; Name=EY744241; organism=Citrus sinensis; type=EST; length=624bp
CCACGCGTCCGCAAATATAAATATTAAATAACTGTCTCCGGTACTCTGTC
AAATGAAGATCAATGAACACGATGAGCTGATCTTCTGATAAAGTGATTGA
CATGTTCCTTTGGTCACCCGAGTCCTCAAGAATTTACATCTTTCTTTTGT
GCCTAAGATGTATGGTTTGAGTTTTCTTTTGTGGATATAAGTTCCAACTA
GCATATAATTAAATATACTTGCTTCCTTAAATGTCGTTAATACTGTTGTG
GATAAATTGTTTGCACTCTGGATCTATGTGTAGCTAATATCTAATATTTG
ATGCAGGTAGAAGGGAAAACAGTTAAGGCACAGATTTGGGATACTGCAGG
CCAGGAGCGGTACCGAGCAATCACCAGTGCCTACTATAGAGGAGCAGTTG
GTGCACTCCTTGTCTATGATATAACCAAGAGGCAAACTTTTGACAATGTC
CTAAGGTGGCTTCGTGAATTGAGGGACCATGCAGATTCAAACATTGTCAT
AATGATGGCTGGAAATAAGTCGGACTTAAATCATCTGAGAGCTGTTACCG
AGGAGGATGGCCATTCTTTGGCTGAAAAAGAAGGTCTCTCATTTCTTGAG
ACATCAGCTTTGGAAGCAACCCAT
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