EY661769

Overview
NameEY661769
Unique NameEY661769
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length895
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY661769 vs. ExPASy Swiss-Prot
Match: APH1_ARATH (Gamma-secretase subunit APH1-like OS=Arabidopsis thaliana GN=At2g31440 PE=2 SV=2)

HSP 1 Score: 300.056 bits (767), Expect = 1.159e-80
Identity = 150/236 (63.56%), Postives = 169/236 (71.61%), Query Frame = 1 
Query:   22 VAVPIGYALIALGPSLSLFVAVISKKPFXXXXXXXXXXXXXXXXXXXXXXXRAFLPLKSTTWWPFALLIISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQIXXXXXXXXXXXXXXFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAFNGYAEGNTTDQYFVPVVHLVAGMVTLVNFASGGCVVGXXXXXXXXXXXXXHCGKMVWRR 729
            VA  IGYAL+ALGPSLSLFV+VIS+KPF                       R FLPLK+  WWP+ALL+I+SV FQEGLR LFWKVYKRLED LD+FADR+ +PRLFLTDK+QI              FFCLSLLTPAFGPATFYV+RC ++PFFLISAIIALAFVTIHTFSMVIAF GYA+GN  DQ  VPV+HL AGM+TLVNFAS GCV+G             HCGKMVW+R
Sbjct:    3 VAAGIGYALVALGPSLSLFVSVISRKPFLILTVLSSTLLWLVSLIILSGLWRPFLPLKANVWWPYALLVITSVCFQEGLRFLFWKVYKRLEDVLDSFADRISRPRLFLTDKLQIALAGGLGHGVAHAVFFCLSLLTPAFGPATFYVERCSKVPFFLISAIIALAFVTIHTFSMVIAFEGYAKGNKVDQIIVPVIHLTAGMLTLVNFASEGCVIGVPLLYLVASLTLVHCGKMVWQR 238
The following BLAST results are available for this feature:
BLAST of EY661769 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
APH1_ARATH1.159e-8063.56Gamma-secretase subunit APH1-like OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-036-G08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661769 ID=EY661769; Name=EY661769; organism=Citrus sinensis; type=EST; length=895bp
TTCGGTAGACCACGCGTCCGAGTAGCGGTACCCATCGGGTACGCGTTGAT
AGCGCTGGGGCCGTCTCTTTCTCTATTCGTCGCCGTCATCTCCAAAAAGC
CTTTCTTGATCCTCACTGTCCTTTCTAGTACATTGTTATGGCTTATAAGT
CTGATTGTGCTGTCGGGGATATGGAGGGCTTTTCTTCCTCTAAAATCAAC
CACCTGGTGGCCATTTGCACTACTTATAATTTCATCTGTCGGATTCCAAG
AAGGGCTTCGTGTTCTTTTCTGGAAAGTTTACAAGAGGTTGGAAGACACG
TTGGATGCTTTTGCTGACAGAGTTGGAAAACCACGCTTATTTCTGACTGA
TAAGATGCAAATTGCTCTTGCTGGTGGATTAGGCCATGGTGTGGCCCATG
CTGTGTTTTTTTGTCTTAGCCTGTTAACTCCAGCATTTGGTCCAGCTACA
TTTTATGTTGACAGATGCCCCCAGATGCCCTTTTTTCTTATTTCTGCAAT
CATTGCTCTTGCATTTGTTACAATTCACACTTTCTCAATGGTCATTGCAT
TTAATGGGTATGCTGAAGGGAATACAACGGACCAGTATTTTGTTCCTGTT
GTTCATCTTGTGGCCGGAATGGTGACATTGGTAAATTTTGCATCTGGTGG
TTGTGTCGTTGGGATTCCTCTGCTCTATATCCTGGCAAGCTTGATCCTGT
TACACTGTGGGAAAATGGTGTGGAGAAGATAACAGCAAGCTGAAGCATGC
AGGGTAATTCTTAGTGATCCATAGCAATTGGAAAGTCACTCTCAAAATTA
TAGCTCAGCTGAACATGTAATGTACTACANCAATGTATCTTGGAAGGTTC
TCAAACCATTTATTTTGTGACTGACTCCATACTAATTCATTCAAC
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