EY661756

Overview
NameEY661756
Unique NameEY661756
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length908
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY661756 vs. ExPASy Swiss-Prot
Match: CTR9_MOUSE (RNA polymerase-associated protein CTR9 homolog OS=Mus musculus GN=Ctr9 PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 1.375e-28
Identity = 61/145 (42.07%), Postives = 94/145 (64.83%), Query Frame = 2
Query:  374 YFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 808
            +   L    R  + E  H ++A  +Y +V+     NLYAANG G VLA KG F  ++D+F QV+EA +      + DVW+NLAH+Y  Q  +  A++MY+NCLRKFY + + +++LYLAR  ++  + Q+CK++LL+A H+APS+
Sbjct:  611 WLQTLHQPTRDREKEKRHQDRALAIYKQVLRNDAKNLYAANGIGAVLAHKGYFREARDVFAQVREATA-----DISDVWLNLAHIYVEQKQYISAVQMYENCLRKFYKHQNTEVVLYLARALFKCGKLQECKQTLLKARHVAPSD 750          
BLAST of EY661756 vs. ExPASy Swiss-Prot
Match: CTR9_HUMAN (RNA polymerase-associated protein CTR9 homolog OS=Homo sapiens GN=CTR9 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.375e-28
Identity = 61/145 (42.07%), Postives = 94/145 (64.83%), Query Frame = 2
Query:  374 YFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 808
            +   L    R  + E  H ++A  +Y +V+     NLYAANG G VLA KG F  ++D+F QV+EA +      + DVW+NLAH+Y  Q  +  A++MY+NCLRKFY + + +++LYLAR  ++  + Q+CK++LL+A H+APS+
Sbjct:  611 WLQTLHQPTRDREKEKRHQDRALAIYKQVLRNDAKNLYAANGIGAVLAHKGYFREARDVFAQVREATA-----DISDVWLNLAHIYVEQKQYISAVQMYENCLRKFYKHQNTEVVLYLARALFKCGKLQECKQTLLKARHVAPSD 750          
BLAST of EY661756 vs. ExPASy Swiss-Prot
Match: CTR9_XENTR (RNA polymerase-associated protein CTR9 homolog OS=Xenopus tropicalis GN=ctr9 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.520e-27
Identity = 60/145 (41.38%), Postives = 93/145 (64.14%), Query Frame = 2
Query:  374 YFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 808
            +   L    R  + E  H ++A  +Y +V+   + NLYAANG G VLA KG    ++D+F QV+EA +      + DVW+NLAH+Y  Q  +  A++MY+NCLRKFY + + ++LLYLAR  ++  + Q+CK+ LL+A H+AP++
Sbjct:  611 WLQTLHQPTRDREKEKRHQDRALAIYKQVLRNDSKNLYAANGIGAVLAHKGYVREARDVFAQVREATA-----DISDVWLNLAHIYVEQKQYISAVQMYENCLRKFYKHQNTEVLLYLARALFKCGKLQECKQILLKARHVAPND 750          
BLAST of EY661756 vs. ExPASy Swiss-Prot
Match: CTR9_XENLA (RNA polymerase-associated protein CTR9 homolog OS=Xenopus laevis GN=ctr9 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.423e-27
Identity = 59/145 (40.69%), Postives = 93/145 (64.14%), Query Frame = 2
Query:  374 YFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 808
            +   L    R  + E  H ++A  +Y +V+   + NL+AANG G VLA KG    ++D+F QV+EA +      + DVW+NLAH+Y  Q  +  A++MY+NCLRKFY + + ++LLYLAR  ++  + Q+CK+ LL+A H+AP++
Sbjct:  611 WLQTLHQPTRDREKEKRHQDRALAIYKQVLRNDSKNLFAANGIGAVLAHKGYVREARDVFAQVREATA-----DISDVWLNLAHIYVEQKQYISAVQMYENCLRKFYKHQNTEVLLYLARALFKCGKLQECKQILLKARHVAPND 750          
BLAST of EY661756 vs. ExPASy Swiss-Prot
Match: YKD1_CAEEL (TPR repeat-containing protein B0464.2 OS=Caenorhabditis elegans GN=B0464.2 PE=2 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 1.862e-17
Identity = 44/135 (32.59%), Postives = 80/135 (59.26%), Query Frame = 2
Query:  374 YFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSL 778
            +F  L N  R  + E  ++++A ++Y + +     N+YAANG G VLA K  ++ ++D+F+QV+E+ S     +  DVW+N+AHV   +  +  A++MY + ++KF    D+ +  YLA+ +Y A    + K++L
Sbjct:  642 WFEQLLNPSRKKEDEKKYIDRALQMYQKALKLQPKNMYAANGIGCVLAYKRNWNDARDVFSQVRESTS-----EFYDVWLNIAHVCMEREQWMAAVQMYSSAMKKFRKENDSTLQHYLAKAYYRANMLNEAKEAL 771          
The following BLAST results are available for this feature:
BLAST of EY661756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CTR9_MOUSE1.375e-2842.07RNA polymerase-associated protein CTR9 homolog OS=... [more]
CTR9_HUMAN1.375e-2842.07RNA polymerase-associated protein CTR9 homolog OS=... [more]
CTR9_XENTR1.520e-2741.38RNA polymerase-associated protein CTR9 homolog OS=... [more]
CTR9_XENLA4.423e-2740.69RNA polymerase-associated protein CTR9 homolog OS=... [more]
YKD1_CAEEL1.862e-1732.59TPR repeat-containing protein B0464.2 OS=Caenorhab... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-036-F06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661756 ID=EY661756; Name=EY661756; organism=Citrus sinensis; type=EST; length=908bp
TCCGTCGACCCACGCGTCCGGGAGCTTATAACGATGACTGGGTCAAGGCA
AAAGAAACATTCCGAGCTGCCAGTGATGCAACTGATGGGAAGGATTCTTA
TGCTACTCTCTCTCTGGTGCATATATTTTTCGTCTTTGGAATTCTTCCAA
CTTTTCTTTACACATCTTGGTATTATATTTATAAGCTCACACTCTTATTG
CCCTGTCAGTCCCTCGAGATGCTTTTGCTGGGTTTAGTCCTTTTTTTCTC
GTCTACCTGCACAACTCATTACCATAATAAAAGATTTATTTCATTACTGT
TGTTATAATCATTACACTGCAGCTTAATATCCATCTCATATGCTTGGTTG
GTTTTGGTAAGGGAAACTGGAACTACTTCGCCGCCCTTCGTAACGAAAAG
AGAGCCCCAAAGTTGGAAGCAACCCATTTGGAAAAAGCGAAGGAACTCTA
CACGAGAGTTATTGTCCAGCATACATCTAATCTCTATGCTGCCAATGGTG
CTGGAGTGGTCTTGGCAGAAAAAGGCCAGTTTGATGTTTCAAAAGATCTT
TTTACGCAGGTTCAAGAAGCTGCAAGTGGAAGTGTCTTTGTCCAGATGCC
AGATGTGTGGATAAATTTGGCGCATGTTTATTTTGCTCAAGGAAATTTTG
CTTTGGCTATGAAAATGTATCAAAATTGCTTGAGGAAATTTTATTATAAT
ACGGACGCCCAAATTCTTCTCTATTTGGCCCGAACTCATTATGAAGCTGA
ACAGTGGCAAGACTGCAAGAAATCATTGCTGAGAGCGATCCACTTGGCTC
CCTCAAATTAACATTAAGAATTGATGCAGGTGNTGCTATGCAGAAGTTTT
CNGCATCACACTACAAAGACAAGAAGGACAGCTGATGAGGTGCGTTCACA
GTTGCAGA
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